MDS_IES_DB: A database of macronuclear and micronuclear genes in spirotrichous ciliates

Nucleic Acids Research

Volumn 33, Issue DATABASE ISS., 2005, Pages

  Cavalcanti, Andre R O ^a   Clarke, Thomas H ^a   Landweber, Laura F ^a  

^a PRINCETON UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

PROTOZOAL DNA; DNA;

ACCESS TO INFORMATION; ARTICLE; CELL MATURATION; CILIATE; COMPUTER INTERFACE; DNA RECOMBINATION; GENE REARRANGEMENT; GENE SEQUENCE; GENETIC DATABASE; INTERNET; MACRONUCLEUS; MDS IES DB; MICRONUCLEUS; NONHUMAN; PRIORITY JOURNAL; PROTOZOAL GENETICS; GENETIC RECOMBINATION; INTERNAL ELIMINATED SEQUENCE DATABASE; MACRONUCLEAR DESTINED SEQUENCE DATABASE; PROTOZOON;

ANIMALS; CILIOPHORA; DATABASES, NUCLEIC ACID; GENES, PROTOZOAN; MACRONUCLEUS; MICRONUCLEUS, GERMLINE; SEQUENCE ANALYSIS, DNA; USER-COMPUTER INTERFACE;

CILIOPHORA; MYXOZOA; PROTOZOA; SPIROTRICHEA;

EID: 13444257904     PISSN: 03051048     EISSN: None     Source Type: Journal    
DOI: 10.1093/nar/gki130     Document Type: Article

References (13)

1. Prescott,D.M. (1994) The DNA of ciliated protozoa. Microbiol. Rev., 58, 233-267.
2. Mitcham,J.L., Lynn,A.J. and Prescott,D.M. (1992) Analysis of a scrambled gene: the gene encoding alpha-telomere-binding protein in Oxytricha nova. Genes Dev., 6, 788-800.
3. Prescott,J.D., DuBois,M.L. and Prescott,D.M. (1998) Evolution of the scrambled germline gene encoding α-telomere binding protein in three hypotrichous ciliates. Chromosoma, 107, 293-303.
4. DuBois,M. and Prescott,D.M. (1995) Scrambling of the actin I gene in two Oxytricha species. Proc. Natl Acad. Sci. USA, 92, 3888-3892.
5. Hogan,D.J., Hewitt,E.A., Orr,K.E., Prescott,D.M. and Müller,K.M. (2001) Evolution of IESs and scrambling in the actin I gene in hypotrichous ciliates. Proc. Natl Acad. Sci. USA, 98, 15101-15106.
6. Hoffman,D.C. and Prescott,D.M. (1996) The germline gene encoding DNA polymerase alpha in the hypotrichous ciliate Oxytricha nova is extremely scrambled. Nucleic Acids Res., 24, 3337-3340.
7. Landweber,L.F., Kuo,T.C. and Curtis,E.A. (2000) Evolution and assembly of an extremely scrambled gene. Proc. Natl Acad. Sci. USA, 97, 3298-3303.
8. Prescott,D.M. (2000) Genome gymnastics: unique modes of DNA evolution and processing in ciliates. Nature Rev. Genet., 1, 191-198.
9. Cavalcanti,A.R.O. and Landweber,L.F. (2004) Gene Unscrambler for detangling scrambled genes in ciliates. Bioinformatics, 20 800-802.
10. Powell,K. (2002) Second round of gene sequencing goes down to the farm. Nature, 419, 237.
11. Doak,T.G., Cavalcanti,A.R.O., Stover,N., Dunn,D.M., Weiss,R., Herrick,G. and Landweber,L.F. (2003) Sequencing the Oxytricha trifallax macronuclear genome: a pilot project. Trends Genet., 19, 603-607.
12. Cavalcanti,A.R.O., Dunn,D.M., Weiss,R., Herrick,G., Landweber,L.F. and Doak,T.G. (2004) Sequence features of Oxytricha trifallax (class Spirotrichia) macronuclear telomeric and subtelomeric sequences. Protist, 155, 311-322.
13. Cavalcanti,A.R.O., Stover,N.A., Orecchia,L., Doak,T.G. and Landweber,L.F. (2004) Coding properties of Oxytricha trifallax (Sterkiella histriomuscorum) macronuclear chromosomes: analysis of a pilot genome project. Chromosoma, 113, 69-76.