The Terminal acidic SANT 1 (Tacs1) gene of maize is expressed in tissues containing meristems and encodes an acidic SANT domain similar to some chromatin-remodeling complex proteins

Biochimica et Biophysica Acta - Gene Structure and Expression

Volumn 1727, Issue 2, 2005, Pages 81-86

  Marian, Calin O ^a   Bass, Hank W ^a  

^a FLORIDA STATE UNIVERSITY   (United States)

Author keywords

Myb like DNA binding domain; Plant; Primordium; SANT domain; Surface electrostatic potential; Telomere

Indexed keywords

PROTEIN DERIVATIVE;

ACIDITY; ARABIDOPSIS; ARTICLE; CHROMATIN ASSEMBLY AND DISASSEMBLY; COMPLEX FORMATION; CONTROLLED STUDY; DATA ANALYSIS; GENE EXPRESSION; GENETIC CODE; MERISTEM; MOLECULAR BIOLOGY; MOLECULAR MODEL; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYTOCHEMISTRY; PLANT GENETICS; PRIMORDIUM; PRIORITY JOURNAL; PROTEIN DOMAIN; PROTEIN FUNCTION; TERMINAL ACIDIC SANT 1 GENE;

EID: 13444251385     PISSN: 01674781     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.bbaexp.2004.12.010     Document Type: Article

References (30)

1. D.A. Benson, I. Karsch-Mizrachi, D.J. Lipman, J. Ostell, and D.L. Wheeler GenBank: update Nucleic Acids Res. 32 2004 D23 D26 (Database issue)
2. Q. Dong, S.D. Schlueter, and V. Brendel PlantGDB, plant genome database and analysis tools Nucleic Acids Res. 32 2004 D354 D359 (Database issue)
3. R. Alba, Z. Fei, P. Payton, Y. Liu, S.L. Moore, P. Debbie, J. Cohn, M. D'Ascenzo, J.S. Gordon, J.K. Rose, G. Martin, S.D. Tanksley, M. Bouzayen, M.M. Jahn, and J. Giovannoni ESTs, cDNA microarrays, and gene expression profiling: tools for dissecting plant physiology and development Plant J. 39 2004 697 714
4. T. Bilaud, C.E. Koering, E. Binet-Brasselet, K. Ancelin, A. Pollice, S.M. Gasser, and E. Gilson The telobox, a Myb-related telomeric DNA binding motif found in proteins from yeast, plants and human Nucleic Acids Res. 24 1996 1294 1303
5. T. Lugert, and W. Werr A novel DNA-binding domain in the Shrunken initiator-binding protein (IBP1) Plant Mol. Biol. 25 1994 493 506
6. O. da Costa e Silva, L. Klein, E. Schmelzer, G.F. Trezzini, and K. Hahlbrock BPF-1, a pathogen-induced DNA-binding protein involved in the plant defense response Plant J. 4 1993 125 135
7. E.Y. Yu, S.E. Kim, J.H. Kim, J.H. Ko, M.H. Cho, and I.K. Chung Sequence-specific DNA recognition by the myb-like domain of plant telomeric protein, RTBP1 J. Biol. Chem. 275 2000 24208 24214
8. C.M. Chen, C.T. Wang, and C.H. Ho A plant gene encoding a Myb-like protein that binds telomeric GGTTAG repeats in vitro J. Biol. Chem. 276 2001 16511 16519
9. M.G. Hwang, I.K. Chung, B.G. Kang, and M.H. Cho Sequence-specific binding property of Arabidopsis thaliana telomeric DNA binding protein 1 (AtTBP1) FEBS Lett. 503 2001 35 40
10. S.W. Yang, D.H. Kim, J.J. Lee, Y.J. Chun, J.H. Lee, Y.J. Kim, I.K. Chung, and W.T. Kim Expression of the telomeric repeat binding factor gene NgTRF1 is closely coordinated with the cell division program in tobacco BY-2 suspension culture cells J. Biol. Chem. 278 2003 21395 21407
11. M. Feldbrugge, M. Sprenger, K. Hahlbrock, and B. Weisshaar PcMYB1, a novel plant protein containing a DNA-binding domain with one MYB repeat, interacts in vivo with a light-regulatory promoter unit Plant J. 11 1997 1079 1093
12. C.O. Marian, S.J. Bordoli, M. Goltz, R.A. Santarella, L.P. Jackson, O. Danilevskaya, M. Beckstette, R. Meeley, and H.W. Bass The maize single myb histone 1 gene, Smh1, belongs to a novel gene family and encodes a protein that binds telomere DNA repeats in vitro Plant Physiol. 133 2003 1336 1350
13. P. Schrumpfova, M. Kuchar, G. Mikova, L. Skrisovska, T. Kubicarova, and J. Fajkus Characterization of two Arabidopsis thaliana myb-like proteins showing affinity to telomeric DNA sequence Genome 47 2004 316 324
14. R. Aasland, A.F. Stewart, and T. Gibson The SANT domain: a putative DNA-binding domain in the SWI-SNF and ADA complexes, the transcriptional co-repressor N-CoR and TFIIIB Trends Biochem. Sci. 21 1996 87 88
15. L. Chong, B. van Steensel, D. Broccoli, H. Erdjument-Bromage, J. Hanish, P. Tempst, and T. de Lange A human telomeric protein Science 270 1995 1663 1667
16. D. Broccoli, A. Smogorzewska, L. Chong, and T. de Lange Human telomeres contain two distinct Myb-related proteins, TRF1 and TRF2 Nat. Genet. 17 1997 231 235
17. L.A. Boyer, R.R. Latek, and C.L. Peterson The SANT domain: a unique histone-tail-binding module? Nat. Rev., Mol. Cell Biol. 5 2004 158 163
18. Q.H. Zhu, K. Ramm, R. Shivakkumar, E.S. Dennis, and N.M. Upadhyaya The ANTHER INDEHISCENCE1 gene encoding a single MYB domain protein is involved in anther development in rice Plant Physiol. 135 2004 1514 1525
19. H. Sanchez-Villeda, S. Schroeder, M. Polacco, M. McMullen, S. Havermann, G. Davis, I. Vroh-Bi, K. Cone, N. Sharopova, Y. Yim, L. Schultz, N. Duru, T. Musket, K. Houchins, Z. Fang, J. Gardiner, and E. Coe Development of an integrated laboratory information management system for the maize mapping project Bioinformatics 19 2003 2022 2030
20. J. Kopp, and T. Schwede The SWISS-MODEL repository of annotated three-dimensional protein structure homology models Nucleic Acids Res. 32 2004 D230 D234 (Database issue)
21. T. Schwede, J. Kopp, N. Guex, and M.C. Peitsch SWISS-MODEL: an automated protein homology-modeling server Nucleic Acids Res. 31 2003 3381 3385
22. N. Guex, and M.C. Peitsch SWISS-MODEL and the Swiss-PdbViewer: an environment for comparative protein modeling Electrophoresis 18 1997 2714 2723
23. M. Pietsch Protein modeling by e-mail Bio/Technology 13 1995 658 660
24. T. Nishikawa, H. Okamura, A. Nagadoi, P. Konig, D. Rhodes, and Y. Nishimura Solution structure of a telomeric DNA complex of human TRF1 Structure (Cambridge) 9 2001 1237 1251
25. J.D. Thompson, D.G. Higgins, and T.J. Gibson CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice Nucleic Acids Res. 22 1994 4673 4680
26. B. Bjellqvist, G.J. Hughes, C. Pasquali, N. Paquet, F. Ravier, J.C. Sanchez, S. Frutiger, and D. Hochstrasser The focusing positions of polypeptides in immobilized pH gradients can be predicted from their amino acid sequences Electrophoresis 14 1993 1023 1031
27. B. Bjellqvist, B. Basse, E. Olsen, and J.E. Celis Reference points for comparisons of two-dimensional maps of proteins from different human cell types defined in a pH scale where isoelectric points correlate with polypeptide compositions Electrophoresis 15 1994 529 539
28. M.R. Wilkins, E. Gasteiger, A. Bairoch, J.C. Sanchez, K.L. Williams, R.D. Appel, and D.F. Hochstrasser Protein identification and analysis tools in the ExPASy server A.J. Link 2-D proteome analysis protocols 1998 Humana Press Totowa, NJ
29. T. Grune, J. Brzeski, A. Eberharter, C.R. Clapier, D.F. Corona, P.B. Becker, and C.W. Muller Crystal structure and functional analysis of a nucleosome recognition module of the remodeling factor ISWI Mol. Cell 12 2003 449 460
30. Z.N. Karamysheva, Y.V. Surovtseva, L. Vespa, E.V. Shakirov, and D.E. Shippen A C-terminal Myb-extension domain defines a novel family of double-strand telomeric DNA binding proteins in Arabidopsis J. Biol. Chem. 279 2005 47799 47807