Monitoring of bacterial evolution and molecular identification of lactic acid bacteria in smoked salmon during storage

Lait

Volumn 84, Issue 1-2, 2004, Pages 145-154

  Rachman, Cinta ^a   Fourrier, Angélique ^a   Sy, Abdoulaye ^a   De la Cochetiere, Marie France ^b   Prevost, Hervé ^a   Dousset, Xavier ^a  

^a LUNAM UNIVERSITÉ   (France)

^b NANTES UNIVERSITY HOSPITAL   (France)

Author keywords

16S 23S rDNA intergenic spacer region; Lactic acid bacteria; Smoked salmon; TTGE

Indexed keywords

BACTERIA; CATALYSIS; DNA; ELECTROPHORESIS; FOOD STORAGE; ORGANIC ACIDS;

COLD SMOKED SALMON (CSS); MOLECULAR IDENTIFICATION;

MEATS;

BACTERIA (MICROORGANISMS); BROCHOTHRIX THERMOSPHACTA; CARNOBACTERIUM; CARNOBACTERIUM MALTAROMATICUM; LACTOBACILLUS; LACTOBACILLUS CURVATUS; NEGIBACTERIA; PHOTOBACTERIUM; PHOTOBACTERIUM PHOSPHOREUM; PISCICOLA; POSIBACTERIA; SHEWANELLA; SHEWANELLA PUTREFACIENS; VIBRIO;

EID: 1342303769     PISSN: 00237302     EISSN: None     Source Type: Journal    
DOI: 10.1051/lait:2003045     Document Type: Conference Paper

References (25)

1. Altschul S.F., Madden T.L., Schaffer A.A., Zhang J., Zhang Z., Miller W., Lipman D.J., Gapped BLAST and PSI BLAST: a new generation of protein database search programs, Nucl. Acids Res. 25 (1997) 3389-3402.
2. Berthier F., Ehrlich S.D., Rapid species identification within two groups of closely related lactobacilli using PCR primers that target the 16S/ 23S rRNA spacer region, FEMS Microbiol. Lett. 161 (1998) 97-106.
3. Cambon-Bonavita M.A., Lesongeur F., Menoux S., Lebour A., Barbier G., Microbial diversity in smoked salmon examined by a culture-independent molecular approach-a preliminary study, Int. J. Food Microbiol. 70 (2001) 179-187.
4. Dalgaard P., Qualitative and quantitative characterization of spoilage bacteria from packed fish, Int. J. Food Microbiol. 26 (1995) 319-333.
5. Godon J.J., Zumstein E., Dabert P., Habouzit F., Moletta R., Molecular microbial diversity of an anaerobic digestor as determined by small-subunit rDNA sequence analysis, Appl. Environ. Microbiol. 63 (1997) 2802-2813.
6. Gonzalez-Rodriguez M.N., Sanz J.J., Santos J.A., Otero A., Garcia-Lopez M.L., Numbers and types of microorganisms in vacuum-packed cold-smoked freshwater fish at the retail level. Int. J. Food. Microbiol. 77 (2002) 161-168.
7. Gram L., Huss H.H., Microbiological spoilage of fish and fish products, Int. J. Food Microbiol. 33 (1996) 121-137.
8. Gürtler V., Stanisich V.A., New approaches to typing and identification of bacteria using the 16S-23S rDNA spacer region, Microbiology 142 (1996) 3-16.
9. Heuer H., Hartung K., Wieland G., Kramer I., Smalla K., Polynucleotide probes that target a hypervariable region of 16S rRNA genes to identify bacterial isolates corresponding to bands of community fingerprints, Appl. Environ. Microbiol. 65 (1999) 1045-1049.
10. Kabadjova P., Dousset X., Le Cam V., Prévost H., Differentiation of closely related Carnobacterium food isolates based on 16S-23S ribosomal DNA intergenic spacer region polymorphism, Appl. Environ. Microbiol. 68 (2002) 5358-5366.
11. Le Jeune C., Lonvaud-Funel A., Sequence of DNA 16S/23S spacer region of Leuconostoc oenos (Oenococcus oeni): application to strain differentiation. Res. Microbiol. 148 (1997) 79-86.
12. Leroi F., Joffraud J.J., Chevalier F., Cardinal M., A study of the microbial ecology of cold smoked salmon during storage at 8°C, Int. J. Food Microbiol. 39 (1998) 111-121.
13. Lyhs U., Björkroth J., Korkeala H., Characterisation of lactic acid bacteria from spoiled, vacuum-packaged, cold-smoked rainbow trout using ribotyping, Int. J. Food Microbiol. 52 (1999) 77-84.
14. Lyhs U., Korkeala H., Björkroth J., Identification of lactic acid bacteria from spoiled, vacuum-packaged 'gravad' rainbow trout using ribotyping, Int. J. Food Microbiol. 72 (2002) 147-153.
15. Muyzer G., Smalla K., Application of denaturing gradient gel electrophoresis (DGGE) and temperature gradient gel electrophoresis (TTGE) in microbial ecology, Int. J. Gen. Mol. Microbiol. 73 (1998) 127-141.
16. Ogier J.C., Son O., Gruss A., Tailliez P., Delacroix-Buchet A., Identification of the bacterial microflora in dairy products by temporal temperature gradient gel electrophoresis, Appl. Environ. Microbiol. 68 (2002) 3691-3701.
17. Paludan-Müller C., Dalgaard P., Huss H.H., Gram L., Evaluation of the role of Carnobacterium piscicola in spoilage of vacuum and modified atmosphere-packed coldsmoked salmon stored at 5°C, Int. J. Food Microbiol. 39 (1998) 155-166.
18. Sneath P.H.A., Jones D., Genus Brochothrix, in: Sneath P.H.A., Mair N.S., Sharpe M.E., Holt J.G. (Eds.), Bergey's manual of systematic bacteriology, Vol. 2, The Williams & Wilkins Co., Baltimore, USA, 1976, pp. 1249-1253.
19. Song Y.L., Kato N., Liu C., Matsumiya Y., Kato H., Watanabe K., Rapid identification of 11 human intestinal Lactobacillus species by multiplex PCR assays using group- and species-specific primers derived from the 16S-23S rRNA intergenic spacer region and its flanking 23S rRNA, FEMS Microbiol. Lett. 187 (2000) 167-173.
20. Tannock G.W., Tilsala-Timisjärvi A., Rodtong S., Ng J., Munro K., Alatossava T., Identification of Lactobacillus isolates from the gastrointestinal tract, silage and yoghurt by 16S-23S rRNA gene intergenic spacer region sequence comparison, Appl. Environ. Microbiol. 65 (1999) 4264-4267.
21. Tilsala-Timisjärvi A., Alatossava T., Development of oligonucleotide primers from the 16S-23S rRNA intergenic sequences for identifying different dairy and probiotic lactic acid bacteria, Int. J. Food Microbiol. 35 (1997) 49-56.
22. Truelstrup Hansen L., Huss H.H., Comparison of the microflora isolated from spoiled cold-smoked salmon from three smokehouses, Food Res. Int. 31 (1998) 703-711.
23. Truelstrup Hansen L., Rontved S.D., Huss H.H., Microbiological quality and shelf life of cold-smoked salmon from three different processing plants, Food Microbiol. 15 (1998) 137-150.
24. Tudor J.J., Marri L., Piggot P.J., Daneo-Moore L., Size of the Streptococcus mutans GS-5 chromosome as determined by pulsedfield gel electrophoresis, Infect. Immun. 58 (1990) 838-840.
25. Zoetendal E.G., Akkermans A.D.L., deVos W.M., Temperature gradient gel electrophoresis analysis of 16S rRNA from human fecal samples reveals stable and host-specific communities of active bacteria, Appl. Environ. Microbiol. 64 (1998) 3854-3859.