메뉴 건너뛰기




Volumn 32, Issue 2, 2004, Pages 776-783

Gene structure conservation aids similarity based gene prediction

Author keywords

[No Author keywords available]

Indexed keywords

COMPLEMENTARY DNA; GENOMIC DNA;

EID: 1342263801     PISSN: 03051048     EISSN: None     Source Type: Journal    
DOI: 10.1093/nar/gkh211     Document Type: Article
Times cited : (67)

References (28)
  • 1
    • 2042437650 scopus 로고    scopus 로고
    • Initial sequencing and analysis of the human genome
    • International Human Genome Sequencing Consortium
    • International Human Genome Sequencing Consortium (2001) Initial sequencing and analysis of the human genome. Nature, 409, 860-921.
    • (2001) Nature , vol.409 , pp. 860-921
  • 2
    • 1542563409 scopus 로고    scopus 로고
    • Initial sequencing and comparative analysis of the mouse genome
    • Mouse Genome Sequencing Consortium
    • Mouse Genome Sequencing Consortium (2002) Initial sequencing and comparative analysis of the mouse genome. Nature, 420, 520-562.
    • (2002) Nature , vol.420 , pp. 520-562
  • 5
    • 0030628597 scopus 로고    scopus 로고
    • Dynamite: A flexible code generating language for dynamic programming methods used in sequence comparison
    • Gaasterland,T., Karp,P., Karplus,K., Ouzounis,C., Sander,C. and Valencia,A. (eds), AAAI, Menlo Park, CA
    • Birney,E. and Durbin,R. (1997) Dynamite: a flexible code generating language for dynamic programming methods used in sequence comparison. In Gaasterland,T., Karp,P., Karplus,K., Ouzounis,C., Sander,C. and Valencia,A. (eds), Proceedings of the Fifth International Conference on Intelligent Systems for Molecular Biology. AAAI, Menlo Park, CA, pp. 56-64.
    • (1997) Proceedings of the Fifth International Conference on Intelligent Systems for Molecular Biology , pp. 56-64
    • Birney, E.1    Durbin, R.2
  • 6
    • 0034098730 scopus 로고    scopus 로고
    • Using Genewise in the Drosophila Annotation Experiment
    • Birney,E. and Durbin,R. (2000) Using Genewise in the Drosophila Annotation Experiment. Genome Res., 10, 547-548.
    • (2000) Genome Res. , vol.10 , pp. 547-548
    • Birney, E.1    Durbin, R.2
  • 8
    • 0033782834 scopus 로고    scopus 로고
    • An assessment of gene prediction accuracy in large DNA sequences
    • Guigo,R., Agarwal,P., Abril,J.F., Burset,M. and Fickett,J.W. (2000) An assessment of gene prediction accuracy in large DNA sequences. Genome Res., 10, 1631-1642.
    • (2000) Genome Res. , vol.10 , pp. 1631-1642
    • Guigo, R.1    Agarwal, P.2    Abril, J.F.3    Burset, M.4    Fickett, J.W.5
  • 9
    • 0035002015 scopus 로고    scopus 로고
    • Computational inference of homologous gene structures in the human genome
    • Yeh,R., Lim,L.P. and Burge,C.B. (2001) Computational inference of homologous gene structures in the human genome. Genome Res., 11, 803-816.
    • (2001) Genome Res. , vol.11 , pp. 803-816
    • Yeh, R.1    Lim, L.P.2    Burge, C.B.3
  • 10
    • 0035177648 scopus 로고    scopus 로고
    • Gene recognition in eukaryotic DNA by comparison of genomic sequences
    • Novichkov,P.S., Gelfand,M.S. and Mironov,A.A. (2001) Gene recognition in eukaryotic DNA by comparison of genomic sequences. Bioinformatics, 17, 1011-1018.
    • (2001) Bioinformatics , vol.17 , pp. 1011-1018
    • Novichkov, P.S.1    Gelfand, M.S.2    Mironov, A.A.3
  • 11
    • 0036772510 scopus 로고    scopus 로고
    • Comparative ab initio prediction of gene structures using pair HMMs
    • Meyer,I.M. and Durbin,R. (2002) Comparative ab initio prediction of gene structures using pair HMMs. Bioinformatics, 18, 1309-1318.
    • (2002) Bioinformatics , vol.18 , pp. 1309-1318
    • Meyer, I.M.1    Durbin, R.2
  • 12
    • 0037350957 scopus 로고    scopus 로고
    • SLAM: Cross-species gene finding and alignment with a generalized pair hidden Markov model
    • Alexandersson,M., Cawley,S. and Pachter,L. (2003) SLAM: cross-species gene finding and alignment with a generalized pair hidden Markov model. Genome Res., 13, 496-503.
    • (2003) Genome Res. , vol.13 , pp. 496-503
    • Alexandersson, M.1    Cawley, S.2    Pachter, L.3
  • 13
    • 0034565167 scopus 로고    scopus 로고
    • The conserved exon method for gene finding
    • Bourne,P., Gribskov,K., Altman,R., Jensen,N., Hope,D., Lengauer,T., Mitchell,J., Scheeff,E., Smith,C., Strande,S. and Weissig,H. (eds), AAAI, Menlo Park, CA
    • Bafna,V. and Huson,D.H. (2000) The conserved exon method for gene finding. In Bourne,P., Gribskov,K., Altman,R., Jensen,N., Hope,D., Lengauer,T., Mitchell,J., Scheeff,E., Smith,C., Strande,S. and Weissig,H. (eds), Proceedings of the Eighth International Conference on Intelligent Systems for Molecular Biology. AAAI, Menlo Park, CA, pp. 3-12.
    • (2000) Proceedings of the Eighth International Conference on Intelligent Systems for Molecular Biology , pp. 3-12
    • Bafna, V.1    Huson, D.H.2
  • 14
    • 0034832202 scopus 로고    scopus 로고
    • SGP-1: Prediction and validation of homologous genes bases on sequence alignments
    • Wiehe,T., Gebauer-Jung,S., Mitchell-Olds,T. and Guigo,R. (2001) SGP-1: prediction and validation of homologous genes bases on sequence alignments. Genome Res., 11, 1574-1583.
    • (2001) Genome Res. , vol.11 , pp. 1574-1583
    • Wiehe, T.1    Gebauer-Jung, S.2    Mitchell-Olds, T.3    Guigo, R.4
  • 15
    • 17444437765 scopus 로고    scopus 로고
    • Integrating genomic homology into gene structure prediction
    • Korf,I., Flicek,P., Duan,D. and Brent,M.R. (2001) Integrating genomic homology into gene structure prediction. Bioinformatics, 1, 1-9.
    • (2001) Bioinformatics , vol.1 , pp. 1-9
    • Korf, I.1    Flicek, P.2    Duan, D.3    Brent, M.R.4
  • 18
    • 0027399530 scopus 로고
    • Identification of protein coding regions by database similarity searches
    • Gish,W. and States,D. (1993) Identification of protein coding regions by database similarity searches. Nature Genet., 3, 266-272.
    • (1993) Nature Genet. , vol.3 , pp. 266-272
    • Gish, W.1    States, D.2
  • 20
    • 84935113569 scopus 로고
    • Error bounds for convolutional codes and an asymptotically optimum decoding algorithm
    • Viterbi,A. (1967) Error bounds for convolutional codes and an asymptotically optimum decoding algorithm. IEEE Trans. Information Theory, 13, 260-269.
    • (1967) IEEE Trans. Information Theory , vol.13 , pp. 260-269
    • Viterbi, A.1
  • 21
    • 1342321569 scopus 로고    scopus 로고
    • Bioinformatics approaches to RNA splicing
    • MPhil Thesis, University of Cambridge, UK
    • Levine,A. (2001) Bioinformatics approaches to RNA splicing. MPhil Thesis, University of Cambridge, UK.
    • (2001)
    • Levine, A.1
  • 22
    • 0031586003 scopus 로고    scopus 로고
    • Prediction of complete gene structures in human genomic DNA
    • Burge,C. and Karlin,S. (1997) Prediction of complete gene structures in human genomic DNA. J. Mol. Biol., 268, 78-94.
    • (1997) J. Mol. Biol. , vol.268 , pp. 78-94
    • Burge, C.1    Karlin, S.2
  • 23
    • 24244452808 scopus 로고    scopus 로고
    • Mathematical methods for comparative ab initio gene prediction
    • PhD Thesis, University of Cambridge, UK
    • Meyer,I.M. (2002) Mathematical methods for comparative ab initio gene prediction. PhD Thesis, University of Cambridge, UK.
    • (2002)
    • Meyer, I.M.1
  • 24
    • 0016518550 scopus 로고
    • A linear space algorithm for computing maximal common subsequences
    • Hirschberg,D.S. (1975) A linear space algorithm for computing maximal common subsequences. Commun. ACM, 18, 341-343.
    • (1975) Commun. ACM , vol.18 , pp. 341-343
    • Hirschberg, D.S.1
  • 26
    • 0035162594 scopus 로고    scopus 로고
    • Refseq and Locuslink: NCBI gene-centered resources
    • Pruitt,K.D. and Maglott,D.R. (2001) Refseq and Locuslink: NCBI gene-centered resources. Nucleic Acids Res., 29, 137-140.
    • (2001) Nucleic Acids Res. , vol.29 , pp. 137-140
    • Pruitt, K.D.1    Maglott, D.R.2
  • 27
    • 0029062198 scopus 로고
    • Identification and analysis of multigene families by comparison of exon fingerprints
    • Brown,N.P., Whittaker,A.J., Newell,W.R., Rawlings,C.J. and Beck,S. (1995) Identification and analysis of multigene families by comparison of exon fingerprints. J. Mol. Biol., 249, 342-359.
    • (1995) J. Mol. Biol. , vol.249 , pp. 342-359
    • Brown, N.P.1    Whittaker, A.J.2    Newell, W.R.3    Rawlings, C.J.4    Beck, S.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.