Physical mapping of 32 genetic markers on the Pseudomonas aeruginosa PAO1 chromosome

Microbiology

Volumn 142, Issue 1, 1996, Pages 79-86

  Liao, Xiaowen ^a   Charlebois, Isabelle ^b   Ouellet, Catherine ^b   Morency, Marie Josée ^b   Dewar, Ken ^b   Lightfoot, Jeff ^b   Foster, Jennifer ^c   Siehnel, Richard ^a   Schweizer, Herbert ^d   Lam, Joseph S ^c   Hancock, Robert E W ^a   Levesque, Roger C ^b  

^a UNIVERSITY OF BRITISH COLUMBIA   (Canada)

^b UNIVERSITÉ LAVAL   (Canada)

^c UNIVERSITY OF GUELPH   (Canada)

^d UNIVERSITY OF CALGARY   (Canada)

Author keywords

Genetic markers; Physical mapping; Pseudomonas aeruginosa chromosome

Indexed keywords

ARTICLE; BACTERIAL GENE; CHROMOSOME MAP; DATA BASE; DNA LIBRARY; DNA PROBE; DNA SEQUENCE; MARKER GENE; MOLECULAR CLONING; NONHUMAN; PHAGEMID; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; PSEUDOMONAS AERUGINOSA; PULSED FIELD GEL ELECTROPHORESIS; RESTRICTION FRAGMENT; SEQUENCE HOMOLOGY; SOUTHERN BLOTTING;

EID: 13344283427     PISSN: 13500872     EISSN: None     Source Type: Journal    
DOI: 10.1099/13500872-142-1-79     Document Type: Article

References (45)

1. Amabile-Cuevas, C. F. & Demple, B. (1991). Molecular characterization of the soxRS genes of Escherichia coli: two genes control a superoxide stress regulon. Nucleic Acids Res 19, 4479-4484.
2. Beall, B., Lowe, M. & Lutkenhaus, J. (1988). Cloning and characterization of Bacillus subtilis homologues of Escherichia coli cell division genes ftsZ and ftsA. J Bacteriol 170, 4855-4864.
3. Bell, A. & Hancock, R. E. W. (1989). Outer membrane protein H1 of Pseudomonas aeruginosa: purification of the protein and cloning and nucleotide sequence of the gene. J Bacteriol 171, 3211-3217.
4. Benvenisti, L., Koby, S., Rutman, A., Giladi, H., Yura, T. & Oppenheim, A. B. (1995). Cloning and primary sequence of the rpoH gene from Pseudomonas aeruginosa. Gene 155, 73-76.
5. Birren, B. & Lai, E. (1993). Pulsed Field Gel Electrophoresis. A Practical Approach. New York: Academic Press.
6. Buck, D. W., Spencer, M. E. & Guest, J. R. (1985). Primary structure of the succinyl-CoA synrhetase of Escherichia coli. Biochemistry 24, 6245-6252.
7. Burland, V., Plunkett, G., III, Daniels, D. L. & Blattner, F. R. (1993). DNA sequence and analysis of 136 kilobases of the Escherichia coli genome: organizational symmetry around the origin of replication. Genomics 16, 551-561.
8. Cuskey, S. M. & Phibbs, P. V. (1985). Chromosomal mapping of mutations affecting glycerol and glucose metabolism in Pseudomonas aeruginosa and Pseudomonas putida. J Bacteriol 162, 872-880.
9. Eriani, G., Delarue, M., Poch, O., Gangloff, J. & Moras, D. (1990). Partition of tRNA synthetases into two classes based on mutually exclusive sets of sequence motifs. Nature 347, 203-206.
10. Hassett, D. J., Woodruff, W. A., Wozniak, D. J., Vasil, M. L., Cohen, M. S. & Ohman, D. E. (1993). Cloning and characterization of the Pseudomonas aeruginosa sodA and sodB genes encoding manganese- and iron-cofactored superoxide dismutase: demonstration of increased manganese superoxide dismutase activity in alginate-producing bacteria. J Bacteriol 175, 7658-7665.
11. Holloway, B. W., Römling, U. & Tümmler, B. (1994). Genomic mapping of Pseudomonas aeruginosa PAO. Microbiology 140, 2907-2929.
12. Huang, H., Siehnel, R. J., Bellido, F., Rawling, E. & Hancock, R. E. W. (1992). Analysis of two gene regions involved in the expression of the imipenem-specific, outer membrane porin protein OprD of Pseudomonas aeruginosa. FEMS Microbiol Lett 76, 267-273.
13. Huang, M., Oppermann, F. B. & Steinbuechel, A. (1994). Molecular characterization of the Pseudomonas putida 2,3-butanediol-catabolic pathway. FEMS Microbiol Lett 124, 141-150.
14. Joris, B., Ledent, P., Dideberg, O., Fonzé, E., Lamotte-Brasseur, J., Kelly, J. A., Ghuysen, J. M. & Frère, J.-M. (1991). Comparison of the sequences of class A β-lactamases and of the secondary structure elements of penicillin-recognizing proteins. Antimicrob Agents Chemother 35, 2294-2301.
15. Kawamukai, M., Matsuda, H., Fujii, W., Utsumi, R. & Komano, T. (1989). Nucleotide sequences of fic and fic-1 genes involved in cell filamentation induced by cyclic AMP in Escherichia coli. J Bacteriol 171, 4525-4529.
16. Kwon, D., Lu, C., Walthall, D., Brown, J., Houghton, J. & Abdelal, A. (1994). Structure and regulation of the carAB operon in Pseudomonas aeruginosa and Pseudomonas stutzeri. J Bacteriol 176, 2532-2542.
17. Lightfoot, J. & Lam, J. S. (1993). Chromosomal mapping, expression and synthesis of lipopolysaccharide in Pseudomonas aeruginosa: a role for guanosine diphospho(GDP)-D-mannose. Mol Microbiol 8, 771-782.
18. Lodge, J. M., Minchin, S. D., Piddock, L. J. V. & Busby, S. J. (1990). Cloning, sequencing and analysis of the structural gene and regulatory region of the Pseudomonas aeruginosa chromosomal ampC β-lactamase. Biochem J 272, 627-631.
19. Margolin, W., Corbo, J. C. & Long, S. R. (1991). Cloning and characterization of a Rhizobium meliloti homologue of the Escherichia coli cell division gene ftsZ. J Bacteriol 173, 5822-5830.
20. Martin, P. R., Hobbs, M., Free, P. D., Jeske, Y. & Mattick, J. S. (1993). Characterization of pilQ, a new gene required for the biogenesis of type 4 firnbriae in Pseudomonas aeruginosa. Mol Microbiol 9, 857-868.
21. Michaud, C., Parquet, C., Flouret, B., Blanot, D. & Van Heijenoort, J. (1990). Revised interpretation of the sequence containing the murE gene encoding the UDP-N-acetylmuramyl-tripeptide synthetase of Escherichia coli. Biochem J 269, 277-278.
22. Miller, H. I. (1984). Primary structure of the himA gene of Escherichia coli: homology with DNA-binding protein HU and association with the phenylalanyl-tRNA synthetase operon. Cold Spring Harbor Symp Quant Biol 49, 691-698.
23. Mohr, C. D., Sonsteby, S. K. & Deretic, V. (1994). The Pseudomonas aeruginosa homologs of hemC and hemD are linked to the gene encoding the regulator of mucoidy algR. Mol & Gen Genet 242, 177-184.
24. Nakamura, M., Maruyama, I. N., Soma, M., Kato, J., Suzuki, H. & Hirota, Y. (1983). On the process of cellular division in Escherichia coli: nucleotide sequence of the gene for penicillin-binding protein 2. Mol & Gen Genet 191, 1-9.
25. Poole, K., Krebes, K., McNally, C. & Neshat, S. (1993). Multiple antibiotic resistance in Pseudomonas aeruginosa: evidence for involvement of an efflux operon. J Bacteriol 175, 7363-7372.
26. Ratnaningsih, E., Dharmsthiti, S., Krishnapillai, V., Morgan, A., Sinclair, M. & Holloway, B. W. (1990). A combined physical and genetic map of Pseudomonas aeruginosa PAO. J Gen Microbiol 136, 2351-2357.
27. Robinson, A. C., Kenan, D. J., Hatfull, G. F., Sullivan, N. F., Spielgelberg, R. & Donachie, W. D. (1984). DNA sequence and transcriptional organization of essential cell division genes ftsQ and ftsA of Escherichia coli: evidence for overlapping transcriptional units. J Bacteriol 160, 546-555.
28. Robison, K., Gilbert, W. & Church, G. M. (1994). Large scale bacterial gene discovery by similarity search. Nat Genet 7, 205-214.
29. Römling, U. & Tümmler, B. (1991). The impact of two-dimensional pulsed-field gel electrophoresis techniques for the consistent and complete mapping of bacterial genomes: refined physical map of Pseudomonas aeruginosa PAO. Nucleic Acids Res 12, 3199-3206.
30. Römling, U., Grothues, D., Bautsch, W. & Tümmler, B. (1989). A physical genome map of Pseudomonas aeruginosa PAO. EMBO J 8, 4081-4089.
31. Römling, U., Duchène, M., Essar, D. W., Galloway, D., Guidi-Rontani, C., Hill, D., Lazdunski, A., Millet, R. V., Scheifer, K. H., Smith, D. W., Toschka, H. Y. & Tümmler, B. (1992). Localization of alg, opr, phn, 4·5S RNA, 6S RNA, tox, trp and xcp genes, rrn operons, and the chromosomal origin on the physical genome map of Pseudomonas aeruginosa PAO. J Bacteriol 174, 327-330.
32. Rothmel, R. K., Aldrich, T. L. Houghton, J. E., Coco, W. M., Ornston, L. N. & Chakrabarty, A. M. (1990). Nucleotide sequencing and characterization of Pseudomonas putida catR: a positive regulator of the catBC operon is a member of the lysR family. J Bacteriol 172, 922-931.
33. Saint-Onge, A., Romeyer, F., Lebel, P., Masson, L. & Brousseau, R. (1992). Specificity of the Pseudomonas aeruginosa PAO1 lipoprotein 1 gene as a DNA probe and PCR target region within the Pseudomonadaceae. J Gen Microbiol 138, 733-741.
34. Sambrook, J., Maniatis, T. & Fritsch, E. F. (1989). Molecular Cloning: a Laboratory Manual, 2nd edn. Cold Spring Harbor, NY: Cold Spring Harbor Laboratory.
35. Sanangelantoni, A. M., Calogero, R. C., Buttarelli, F. R., Gualerzi, C. O. & Tiboni, O. (1990). Organization and nucleotide sequence of the genes for ribosomal protein and elongation factor Ts in Spirulina platensis. FEMS Microbiol Lett 66, 141-146.
36. Sano, Y., Matsui, H., Kobayashi, M. & Kageyama, M. (1993). Molecular structures and functions of pyocins S1 and S2 in Pseudomonas aeruginosa. J Bacterol 175, 2907-2916.
37. Schweizer, H. P. & Po, C. (1994). Cloning and nucleotide sequence of the glpD gene encoding sn-glycerol-3-phosphate dehydrogenase of Pseudomonas aeruginosa. J Bacteriol 176, 2184-2193.
38. Siehnel, R. J., Worobec, E. A. & Hancock, R. E. (1988). Regulation of components of the Pseudomonas aeruginosa phosphate-starvation-inducible regulon in Escherichia coli. Mol Microbiol 2, 347-352.
39. Siehnel, R. J., Martin, N. L. & Hancock, R. E. W. (1990). Sequence and relatedness in other bacteria of the Pseudomonas aeruginosa oprP gene coding for the phosphate-specific porin p. Mol Microbiol 4, 831-838.
40. Siehnel, R. J., Egli, C. & Hancock, R. E. W. (1992). Polyphosphate-selective porin OprO of Pseudomonas aeruginosa: expression, purification and sequence. Mol Microbiol 6, 2319-2326.
41. Sofia, H. J., Burland, V., Daniels, D. L., Plunkett, G., III & Blattner, F. R. (1994). Analysis of the Escherichia coli genome V DNA sequence of the region from 76·0 to 81·5 minutes. Nucleic Acids Res 22, 2576-2586.
42. Spratt, B. G. & Cromie, K. D. (1988). Penicillin-binding proteins of Gram-negative bacteria. Rev Infect Dis 10, 699-711.
43. Vieira, J. & Messing, J. (1987). Production of single-stranded plasmid DNA. Methods Enzymol 153, 3-11.
44. West, S. E. & Iglewski, B. H. (1988). Codon usage in Pseudomonas aeruginosa. Nucleic Acids Res 16, 9323-9335.
45. Woodruff, W. A., Parr, T. R., Hancock, R. E. W., Hanne, L., Nicas, T. I. & Iglewski, B. (1986). Expression in Escherichia coli and function of Pseudomonas aeruginosa outer membrane protein. J Bacteriol 167, 473-479.