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Volumn 10, Issue 2, 1996, Pages 59-69

Evaluation of an optimized system for random amplified polymorphic DNA (RAPD)-analysis for genotypic mapping of Candida albicans strains

Author keywords

Candida; DNA typing; random amplified polymorphic DNA (RAPD)

Indexed keywords

BACTERIAL DNA;

EID: 13344282064     PISSN: 08878013     EISSN: None     Source Type: Journal    
DOI: 10.1002/(SICI)1098-2825(1996)10:2<59::AID-JCLA1>3.0.CO;2-G     Document Type: Article
Times cited : (26)

References (43)
  • 1
    • 0026080777 scopus 로고
    • A critical review of typing methods for Candida albicans and their applications
    • Hunter AR: A critical review of typing methods for Candida albicans and their applications. Crit Rev Microbiol 17:417-434, 1991.
    • (1991) Crit Rev Microbiol , vol.17 , pp. 417-434
    • Hunter, A.R.1
  • 3
    • 85047696890 scopus 로고
    • Epidemiological typing methods for mycoses
    • Pfaller MA: Epidemiological typing methods for mycoses. Clin Infect Dis 14:54-12, 1992.
    • (1992) Clin Infect Dis , vol.14 , pp. 54-112
    • Pfaller, M.A.1
  • 4
    • 0002714645 scopus 로고
    • DNA fingerprinting of Candida albicans
    • Soll DR: DNA fingerprinting of Candida albicans. J Mycol Med 3:37-44, 1993.
    • (1993) J Mycol Med , vol.3 , pp. 37-44
    • Soll, D.R.1
  • 5
    • 0023135878 scopus 로고
    • Application of DNA typing methods to epidemiology and taxonomy of Candida species
    • Scherer S, Stevens DA: Application of DNA typing methods to epidemiology and taxonomy of Candida species. J Clin Microbiol 25:675-679, 1987.
    • (1987) J Clin Microbiol , vol.25 , pp. 675-679
    • Scherer, S.1    Stevens, D.A.2
  • 6
    • 0000903350 scopus 로고
    • A Candida albicans dispersed, repeated gene family and its epidemiologic applications
    • Scherer S, Stevens DA: A Candida albicans dispersed, repeated gene family and its epidemiologic applications. Proc Natl Acad Sci USA 85:1452-1456, 1988.
    • (1988) Proc Natl Acad Sci USA , vol.85 , pp. 1452-1456
    • Scherer, S.1    Stevens, D.A.2
  • 7
    • 0026706331 scopus 로고
    • Comparison of molecular typing methods for Candida albicans
    • Magee PT. Bowdin L, Slaudinger, J: Comparison of molecular typing methods for Candida albicans. J Clin Microbiol 30:2674-2679, 1992.
    • (1992) J Clin Microbiol , vol.30 , pp. 2674-2679
    • Magee, P.T.1    Bowdin, L.2    Slaudinger, J.3
  • 8
    • 0025857496 scopus 로고
    • Comparison of restricion enzyme analysis versus pulsed-field gradient gel electrophresis as a typing system for Candida albicans
    • Vazquez JA, Beckley A, Sobel JD, Zervos MJ: Comparison of restricion enzyme analysis versus pulsed-field gradient gel electrophresis as a typing system for Candida albicans. J Clin Microbiol 29:962-967, 1993.
    • (1993) J Clin Microbiol , vol.29 , pp. 962-967
    • Vazquez, J.A.1    Beckley, A.2    Sobel, J.D.3    Zervos, M.J.4
  • 9
    • 0025360001 scopus 로고
    • Computer-assisted methods for assessing strain relatedness in Candida albicans by fingerprinting with the moderately repetitive sequence Ca3
    • Schmid J. Voss E. Soll DR: Computer-assisted methods for assessing strain relatedness in Candida albicans by fingerprinting with the moderately repetitive sequence Ca3. J Clin Microbiol 28:1236-1243, 1990.
    • (1990) J Clin Microbiol , vol.28 , pp. 1236-1243
    • Schmid, J.1    Voss, E.2    Soll, D.R.3
  • 10
    • 0027137711 scopus 로고
    • Amplifying DNA with arbitrary oligonucleotide probes
    • Caetano-Antollés G: Amplifying DNA with arbitrary oligonucleotide probes. PCR Meth Appl 2:85-94, 1993.
    • (1993) PCR Meth Appl , vol.2 , pp. 85-94
    • Caetano-Antollés, G.1
  • 11
    • 0026044143 scopus 로고
    • Fingerprinting genomes using PCR with arbitrary primers
    • Welsh J, McCelland M: Fingerprinting genomes using PCR with arbitrary primers. Nucleic Acids Res 19:5275-5279, 1991.
    • (1991) Nucleic Acids Res , vol.19 , pp. 5275-5279
    • Welsh, J.1    McCelland, M.2
  • 12
    • 0026794926 scopus 로고
    • Use of random amplified polymorphic DNA markers to distinguish isolates of Aspergillus fumigatus
    • Aufauve-Brown A, Cohen J, Holden DW: Use of random amplified polymorphic DNA markers to distinguish isolates of Aspergillus fumigatus. J Clin Microbiol 30:2991-2993, 1992.
    • (1992) J Clin Microbiol , vol.30 , pp. 2991-2993
    • Aufauve-Brown, A.1    Cohen, J.2    Holden, D.W.3
  • 14
    • 0028943645 scopus 로고
    • Analysis of Salmonella entertidis by arbitrary primed PCR
    • Fadl AA, Nguyen AV, Khan MI: Analysis of Salmonella entertidis by arbitrary primed PCR. J Clin Microbiol 33:987-989, 1995.
    • (1995) J Clin Microbiol , vol.33 , pp. 987-989
    • Fadl, A.A.1    Nguyen, A.V.2    Khan, M.I.3
  • 15
    • 0026540056 scopus 로고
    • Diversity among clinical isolates of Histoplasma capsulation detected by polymerase chain reaction with arbitrary primers
    • Kersulyte D, Woods JP, Keath FJ, Goldman WE. Berg DE: Diversity among clinical isolates of Histoplasma capsulation detected by polymerase chain reaction with arbitrary primers. J Bact 174:7075-7079, 1992.
    • (1992) J Bact , vol.174 , pp. 7075-7079
    • Kersulyte, D.1    Woods, J.P.2    Keath, F.J.3    Goldman, W.E.4    Berg, D.E.5
  • 16
    • 0028292375 scopus 로고
    • Use of arbitrary primer PCR to type Clostridium difficile and comparison of results with those by immunoblot typing
    • Killgore GE, Kato H: Use of arbitrary primer PCR to type Clostridium difficile and comparison of results with those by immunoblot typing. J Clin Microbiol 32:1591-1593, 1994.
    • (1994) J Clin Microbiol , vol.32 , pp. 1591-1593
    • Killgore, G.E.1    Kato, H.2
  • 17
    • 0027935875 scopus 로고
    • Rapid discrimination of Mycobacterium tuberculosis strains by random amplified polymorphic DNA profiles
    • Linton CJ, Jalal H, Leeming JP, Millar MR: Rapid discrimination of Mycobacterium tuberculosis strains by random amplified polymorphic DNA profiles. J Clin Microbiol 32:2169-2174, 1994.
    • (1994) J Clin Microbiol , vol.32 , pp. 2169-2174
    • Linton, C.J.1    Jalal, H.2    Leeming, J.P.3    Millar, M.R.4
  • 18
    • 0027471847 scopus 로고
    • Trypanosoma (Nannornonas) congolense: Molecular characterisation of a new genotype from Tsavo, Kenya
    • Majiwa PA, Maina M, Waitumbi JN, Mihok S, Zweygarth E: Trypanosoma (Nannornonas) congolense: molecular characterisation of a new genotype from Tsavo, Kenya. Parasitology 106:151-162, 1993.
    • (1993) Parasitology , vol.106 , pp. 151-162
    • Majiwa, P.A.1    Maina, M.2    Waitumbi, J.N.3    Mihok, S.4    Zweygarth, E.5
  • 19
    • 0028158541 scopus 로고
    • PCR-based random amplified polymorphic DNA fingerprinting of Yersinia pseudotuberculosis and its practical applications
    • Makino S-I, Okado Y, Maruyama T, Kaneko S, Sasakawa C: PCR-based random amplified polymorphic DNA fingerprinting of Yersinia pseudotuberculosis and its practical applications. J Clin Microbiol 32:65-69, 1994.
    • (1994) J Clin Microbiol , vol.32 , pp. 65-69
    • Makino, S.-I.1    Okado, Y.2    Maruyama, T.3    Kaneko, S.4    Sasakawa, C.5
  • 20
    • 0027443425 scopus 로고
    • Comparison of PCR fingerprinting, by random amplification of polymorphic DNA, with other molecular typing methods for Candida albicans
    • Bostock A, Khattak MN, Matthews R, Bumie J: Comparison of PCR fingerprinting, by random amplification of polymorphic DNA, with other molecular typing methods for Candida albicans. Gen Microbiol 139:2179-2184, 1993.
    • (1993) Gen Microbiol , vol.139 , pp. 2179-2184
    • Bostock, A.1    Khattak, M.N.2    Matthews, R.3    Bumie, J.4
  • 21
    • 0026439153 scopus 로고
    • Genotypic identification and characterization of species and strains within the genus Candida by using random amplified polymorphic DNA
    • Lehmann PE, Lin D, Lasker BA: Genotypic identification and characterization of species and strains within the genus Candida by using random amplified polymorphic DNA. J Clin Microbiology 30:3249-3254, 1992.
    • (1992) J Clin Microbiology , vol.30 , pp. 3249-3254
    • Lehmann, P.E.1    Lin, D.2    Lasker, B.A.3
  • 24
    • 13344290074 scopus 로고
    • Amfactual variation in random amplified polymorphic DNA banding profiles
    • Ellsworth DL, Rittenhouse KD, Honeycurt RL: Amfactual variation in random amplified polymorphic DNA banding profiles. Biotechniques 14:215-217, 1993.
    • (1993) Biotechniques , vol.14 , pp. 215-217
    • Ellsworth, D.L.1    Rittenhouse, K.D.2    Honeycurt, R.L.3
  • 25
    • 0027234059 scopus 로고
    • Variability of the random amplified polymorphic DNA assay among thermal cyclers, and effects of primer and DNA concentration
    • MacPherson JM, Eckstein PE, Scoles GJ, Gajadhar AA: Variability of the random amplified polymorphic DNA assay among thermal cyclers, and effects of primer and DNA concentration. Mole Cell Probes 7:293-299, 1993.
    • (1993) Mole Cell Probes , vol.7 , pp. 293-299
    • MacPherson, J.M.1    Eckstein, P.E.2    Scoles, G.J.3    Gajadhar, A.A.4
  • 26
    • 0027447367 scopus 로고
    • Concentration of primer and template qualitatively affects products in random-amplified polymorphic DNA PCR
    • Muralidharan K, Wakeland EK: Concentration of primer and template qualitatively affects products in random-amplified polymorphic DNA PCR. Biotechniques 14:363-364, 1993.
    • (1993) Biotechniques , vol.14 , pp. 363-364
    • Muralidharan, K.1    Wakeland, E.K.2
  • 27
    • 0028409086 scopus 로고
    • 2 on random-amplified DNA polymorphism
    • 2 on random-amplified DNA polymorphism. Biotechniques 16:652-655, 1994.
    • (1994) Biotechniques , vol.16 , pp. 652-655
    • Park, Y.H.1    Kohel, R.J.2
  • 28
    • 0027434155 scopus 로고
    • Different thermostable DNA polyrnerases may amplify different RAPD products
    • Schierwate B, Ender A: Different thermostable DNA polyrnerases may amplify different RAPD products. Nucleic Acids Pres 21:4647-4648, 1993.
    • (1993) Nucleic Acids Pres , vol.21 , pp. 4647-4648
    • Schierwate, B.1    Ender, A.2
  • 30
    • 0025923821 scopus 로고
    • Chelex® 100 s medium for simple extraction of DNA for PCR-based typing from forensic material
    • Walsh PS, Metzger DA, Higuchi R: Chelex® 100 s medium for simple extraction of DNA for PCR-based typing from forensic material. Biotechniques 10:506-513, 1991.
    • (1991) Biotechniques , vol.10 , pp. 506-513
    • Walsh, P.S.1    Metzger, D.A.2    Higuchi, R.3
  • 31
    • 0025213590 scopus 로고
    • Application of DNA typing methods to Candida albicans epidemiology and correlations with phenotype
    • Stevens DA. Odds FC, Scherer S: Application of DNA typing methods to Candida albicans epidemiology and correlations with phenotype. J Infect Dis 12:258-266, 1990.
    • (1990) J Infect Dis , vol.12 , pp. 258-266
    • Stevens, D.A.1    Odds, F.C.2    Scherer, S.3
  • 32
    • 0028900250 scopus 로고    scopus 로고
    • Comparative study of the GenePath Group 4 reagent system and other CHEF systems for karyotype analysis of Candida spp
    • Holmberg K, Feroze F: Comparative study of the GenePath Group 4 reagent system and other CHEF systems for karyotype analysis of Candida spp. J Clin Lab Anal 9:184-192.
    • J Clin Lab Anal , vol.9 , pp. 184-192
    • Holmberg, K.1    Feroze, F.2
  • 35
    • 0025633560 scopus 로고
    • Fingerprinting genomes using PCR with arbitrary primers
    • Welsh J, McClelland M: Fingerprinting genomes using PCR with arbitrary primers. Nucleic Acids Res 18:7213-7218, 1990.
    • (1990) Nucleic Acids Res , vol.18 , pp. 7213-7218
    • Welsh, J.1    McClelland, M.2
  • 36
    • 0026562259 scopus 로고
    • Optimization of the PCR program for RAPD analysis
    • Yu, K, Pauls KP: Optimization of the PCR program for RAPD analysis. Nucleic Acids Res 20:2606, 1992.
    • (1992) Nucleic Acids Res , vol.20 , pp. 2606
    • Yu, K.1    Pauls, K.P.2
  • 37
    • 0000256510 scopus 로고
    • Technical variability in laboratory data
    • P.A. Schultz and F.P. Perera. eds. Academic Press, San Diego
    • Vineis P, Schultz PA, Vogt RF: Technical variability in laboratory data. In Molecular Epidemiology: Principles and Pracnces. P.A. Schultz and F.P. Perera. eds. Academic Press, San Diego, 1993, p 109-134.
    • (1993) Molecular Epidemiology: Principles and Pracnces , pp. 109-134
    • Vineis, P.1    Schultz, P.A.2    Vogt, R.F.3
  • 38
    • 0027669067 scopus 로고
    • Random amplified polymorphic DNA fingerprinting using combinations of oligonucleotide primers
    • Micheli MR, Bova R, Callissano P, Ambrosis D: Random amplified polymorphic DNA fingerprinting using combinations of oligonucleotide primers. BioTeckniques 15:388-330, 1993.
    • (1993) BioTeckniques , vol.15 , pp. 388-1330
    • Micheli, M.R.1    Bova, R.2    Callissano, P.3    Ambrosis, D.4
  • 39
    • 0002062060 scopus 로고
    • Pulsed-field gel electiophoresis and the technology of large DNA molecules
    • KE Davies, ed. IRL Press, Oxford
    • Smith CL, Klco SR, Cantor CR: Pulsed-field gel electiophoresis and the technology of large DNA molecules. In Genome Analysis: A Practical Approach. KE Davies, ed. IRL Press, Oxford, 1988. p 41-72.
    • (1988) Genome Analysis: A Practical Approach , pp. 41-72
    • Smith, C.L.1    Klco, S.R.2    Cantor, C.R.3
  • 40
    • 0028560370 scopus 로고
    • Computing genetic similarity coefficients from RAPD data: The effect of PCR artifacts
    • Lamboy WF: Computing genetic similarity coefficients from RAPD data: The effect of PCR artifacts. PCR Methods Appl 4:31-37, 1994.
    • (1994) PCR Methods Appl , vol.4 , pp. 31-37
    • Lamboy, W.F.1
  • 41
    • 13344256666 scopus 로고
    • Comparative analysis of genetic variability among Candida albicans isolates from different geographic locales by three genotypic methods
    • San Francisco
    • Holmberg K, Feroze F, Clemons KV, Stevens DA: Comparative analysis of genetic variability among Candida albicans isolates from different geographic locales by three genotypic methods. IDSA Annual meeting, San Francisco, 1995.
    • (1995) IDSA Annual Meeting
    • Holmberg, K.1    Feroze, F.2    Clemons, K.V.3    Stevens, D.A.4
  • 42
    • 13344296372 scopus 로고    scopus 로고
    • Comparison of random amplified polymorphic DNA (RAPD) versus pulsed-field gel electrophoresis (PFGE) and restriction enzyme analysis (REA) for genotypic mapping of Candida albicans
    • American Society for Microbiology. Washington, DC
    • Holmberg K, Feroze F: Comparison of random amplified polymorphic DNA (RAPD) versus pulsed-field gel electrophoresis (PFGE) and restriction enzyme analysis (REA) for genotypic mapping of Candida albicans. In Abstracts of the 34th ICAAC, Orlando. 1994 (abst) J42. American Society for Microbiology. Washington, DC.
    • Abstracts of the 34th ICAAC, Orlando. 1994 (Abst) J42
    • Holmberg, K.1    Feroze, F.2


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