Mass spectrometry and database search in the analysis of proteins from the fungus Pleurotus ostreatus

Proteomics

Volumn 5, Issue 1, 2005, Pages 67-75

  Matis, Maja ^a,b,c   Žakelj Mavrič, Marija ^b   Peter Katalinić, Jasna ^a,c  

^a MEDICAL COLLEGE OF GEORGIA   (United States)

^b UNIVERSITY OF LJUBLJANA   (Slovenia)

^c UNIVERSITY OF MÜNSTER   (Germany)

Author keywords

17 HSD; Electrospray ionisation mass spectrometry; FASTS; Mass spectrometry; Matrix assisted laser desorption ionisation; MPsrch

Indexed keywords

ANDROSTENEDIONE; CITRATE SYNTHASE; ENZYME; FUNGAL PROTEIN; ISOENZYME; MALATE DEHYDROGENASE; OXIDOREDUCTASE; PROTEIN P 36; PROTEIN P27; PROTEIN P33; PROTEIN P45; STEROID; TESTOSTERONE; TESTOSTERONE 17BETA DEHYDROGENASE; UNCLASSIFIED DRUG; VANILLATE O DEMETHYLASE OXIDOREDUCTASE;

ARTICLE; DATA BASE; ELECTROSPRAY MASS SPECTROMETRY; ENZYME ACTIVITY; GENOME; ISOTOPE LABELING; MASS SPECTROMETRY; MATRIX ASSISTED LASER DESORPTION IONIZATION TIME OF FLIGHT MASS SPECTROMETRY; NONHUMAN; PLEUROTUS OSTREATUS; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEOMICS; SEQUENCE HOMOLOGY; TANDEM MASS SPECTROMETRY; TESTOSTERONE METABOLISM;

17-HYDROXYSTEROID DEHYDROGENASES; AMINO ACID SEQUENCE; CITRATE (SI)-SYNTHASE; DATABASES, PROTEIN; FUNGAL PROTEINS; ISOENZYMES; ISOTOPE LABELING; MALATE DEHYDROGENASE; MOLECULAR SEQUENCE DATA; OXIDOREDUCTASES, O-DEMETHYLATING; PLEUROTUS; PROTEOMICS; SPECTROMETRY, MASS, ELECTROSPRAY IONIZATION; SPECTROMETRY, MASS, MATRIX-ASSISTED LASER DESORPTION-IONIZATION;

FUNGI; PLEUROTUS; PLEUROTUS OSTREATUS;

EID: 13244268332     PISSN: 16159853     EISSN: None     Source Type: Journal    
DOI: 10.1002/pmic.200400904     Document Type: Article

References (34)

1. McLafferty, F. W., Fridriksson, E. K., Horn, D. M., Lewis, M. A., Zubarev, R. A., Science 1999, 284, 1289-1290.
2. Gygi, S. P., Corthals, G. L., Zhang, Y., Rochon, Y., Aebersold, R., Proc. Natl. Acad. Sci. USA 2000, 97, 9390-9395.
3. Andersen, J. S., Mann, M., FEBS Lett. 2000, 480, 25-31.
4. Jensen, O. N., Proteomics: A Trends Guide 2000, 1, 36-42.
5. Kuster, B., Mortensen, P., Andersen, J. S., Mann, M., Proteomics 2001, 1, 641-650.
6. Galagan, J. E., Calvo, S. E., Borkovich, K. A., Selker, E. U. et al., Nature 2003, 422, 859-868.
7. Dietrich, F. S., Voegeli, S., Brachat, S., Lerch, A. et al., Science 2004, 304, 304-307.
8. Kellis, M., Birren, B. W., Lander, E. S., Nature 2004, 428, 617-624.
9. Dean, R., Magnaporthe Sequencing Project. Fungal Genomics Laboratory at North Carolina State University (http:// www.fungalgenomics.ncsu.edu) and The Center for Genome Research (http://www.broad.mit.edu).
10. Martinez, D., Larrondo, L. F., Putnam, N., Gelpke, M. D. et al., Nat. Biotechnol. Epub2004 May 02.
11. Goffeau, A., Barrell, B. G., Bussey, H., Davis, R. W. et al., Science 1996, 546, 563-567.
12. Wood, V., Gwilliam, R., Rajandream, M. A., Lyne, M. et al., Nature 2002, 415, 871-880.
13. Lanišnik-Rižner, T., Moeller, G., Thole, H. H., Žakelj-Mavrić, M., Adamski, J., Biochem J. 1999, 337, 425-431.
14. Lanišnik-Rižner, T., Žakelj-Mavrić, M., Comp. Biochem. Physiol. B 2000, 127, 53-63.
15. Rižner, T. L., Adamski, J., Žakelj-Mavrić, M., Steroids 2001, 66, 49-54.
16. Adamski, J., Jakob, F. J., Mol. Cell. Endocrinol. 2001, 171, 1-4.
17. Penning, T. M., Endocr. Rev. 1997, 18, 281-305.
18. Shevchenko, A., Chernushevich, I., Ens, W., Standing, K. G. et al., Rapid Commun. Mass Spectrom. 1997, 11, 1015-1024.
19. Pearson, W. R., Lipman, D. J., Proc. Natl. Acad. Sci. USA 1988, 85, 2444-2448.
20. Altschul, S. F., Gish, W., Miller, W., Myers, E. W., Lipman, D. J., J. Mol. Biol. 1990, 215, 403-410.
21. Mackey, A. J., Haystead, T. A., Pearson, W. R., Mol. Cell Proteomics 2002, 1, 139-147.
22. Altschul, S. F., Madden, T. L., Schaffer, A. A., Zhang, J. et al., Nucleic. Acids Res. 1997, 25, 3389-3402.
23. Shevchenko, A., Sunyaev, S., Loboda, A., Shevchenko, A. et al., Anal. Chem. 2001, 73, 1917-1926.
24. Huang, L., Jacob, R. J., Pegg, S. C., Baldwin, M. A., Wang, C. C., Burlingame, A. L., Babbitt, P. C., J. Biol. Chem. 2001, 276, 28327-28339.
25. Pogačar, M., Zorko, M., Žakelj-Mavrić, M., Acta Chim. Slov. 1998, 45, 19-25.
26. Lanišnik-Rižer, T., Žakelj-Mavrić, M., Comp. Biochem. Physiol. B 2000, 127, 53-63.
27. Papayannopoulos, I. A., Mass Spectrom. Rev. 1995, 14, 49-73.
28. Shevchenko, A., Jensen, O. N., Podtelejnikov, A. V., Sagliocco, F. et al., Proc. Natl. Acad. Sci. USA 1996, 93, 14440-14445.
29. Wolters, D. A., Washburn, M. P., Yates III, J. R., Anal. Chem. 2001, 73, 5683-5690.
30. Tong, W., Link, A., Eng, J. K., Yates III, J. R., Anal. Chem. 1999, 71, 2270-2278.
31. Sturrock, S., Collins, J., Biocomputing Research 1993, Unit University of Edinburgh, UK.
32. Obodai, M., Cleland-Okine, J., Vowotor, K. A., J. Ind. Microbiol. Biotechnol. 2003, 30, 146-149.
33. Lachance, Y., Luu-The, V., Labrie, C., Simard, J. et al., J. Biol. Chem. 1990, 265, 20469-20475.
34. Jin, Y., Penning, T. M., Best Pract. Res. Clin. Endocrinol. Metab. 2001, 15, 79-94.