Genome-wide identification of touch- and darkness-regulated Arabidopsis genes: A focus on calmodulin-like and XTH genes

New Phytologist

Volumn 165, Issue 2, 2005, Pages 429-444

  Lee, Dennis ^a   Polisensky, Diana H ^a   Braam, Janet ^a  

^a RICE UNIVERSITY   (United States)

Author keywords

Abiotic stress; Calcium; Calmodulin; Darkness; Mechanical stress; Microarray; Touch; Xyloglucan endotransglucosylase hydrolase

Indexed keywords

ARABIDOPSIS PROTEIN; CALMODULIN; GLYCOSYLTRANSFERASE; XYLOGLUCAN - XYLOGLUCOSYLTRANSFERASE; XYLOGLUCAN XYLOGLUCOSYLTRANSFERASE;

GENE;

ARABIDOPSIS; ARTICLE; DARKNESS; DOWN REGULATION; GENE EXPRESSION REGULATION; GENETICS; GENOME; METABOLISM; NON-PROGRAMMATIC; PHYSIOLOGY; STIMULATION; UPREGULATION;

NON-PROGRAMMATIC;

ARABIDOPSIS; ARABIDOPSIS PROTEINS; CALMODULIN; DARKNESS; DOWN-REGULATION; GENE EXPRESSION REGULATION, PLANT; GENOME, PLANT; GLYCOSYLTRANSFERASES; PHYSICAL STIMULATION; UP-REGULATION;

ARABIDOPSIS;

EID: 13144282771     PISSN: 0028646X     EISSN: None     Source Type: Journal    
DOI: 10.1111/j.1469-8137.2004.01238.x     Document Type: Article

References (35)

1. 2+ binding TCH3 protein of Arabidopsis. Plant Journal 8: 623-636.
2. Arteca JM, Arteca RN. 1999. A multi-responsive gene encoding 1-aminocyclopropane-1-carboxylate synthase (ACS6) in mature Arabidopsis leaves. Plant Molecular Biology 39: 209-219.
3. Botella JR, Arteca RN. 1994. Differential expression of two calmodulin genes in response to physical and chemical stimuli. Plant Molecular Biology 24: 757-766.
4. Botella JR, Arteca JM, Somodevilla M, Arteca RN. 1996. Calcium-dependent protein kinase gene expression in response to physical and chemical stimuli in mungbean (Vigna radiata). Plant Molecular Biology 30: 1129-1137.
5. Braam J. 1992. Regulated expression of the calmodulin-related TCH genes in cultured Arabidopsis cells: Induction by calcium and heat shock. Proceedings of the National Academy of Sciences, USA 89: 3213-3216.
6. Braam J. 2000. The Arabidopsis TCH genes: Regulated in expression by mechanotransduction? In: Cherry JH, Locy RD, Rychter A, Plant tolerance to abiotic stresses in agriculture: role of genetic engineering. Dordrecht, the Netherlands: Kluwer Academic Publishers, 29-37.
7. Braam J, Davis RW. 1990. Rain-, wind- and touch-induced expression of calmodulin and calmodulin-related genes in Arabidopsis. Cell 60: 357-364.
8. Campbell P, Braam J. 1998. Co- and/or post-translational modifications are critical for TCH4 XET activity. Plant Journal 15: 553-561.
9. Darwin C. 1880. The power of movement in plants. London, UK: William Clowes and Sons, Ltd.
10. Eldick GJv, Ruiter RK, Colla PHWN, Herpen MM, Av Schrauwen JAM, Wullems GJ. 1997. Expression of an isoflavone reductase-like gene enhanced by pollen tube growth in pistils of Solanum tuberosum. Plant Molecular Biology 33: 923-929.
11. Gadea J, Conejero V, Vera P. 1999. Developmental regulation of a cytosolic ascorbate peroxidase gene from tomato plants. Molecular and General Genetics 262: 212-219.
12. Gawienowski MC, Szymanski D, Perera IY, Zielinski RE. 1993. Calmodulin isoforms in Arabidopsis encoded by multiple divergent mRNAs. Plant Molecular Biology 22: 215-225.
13. Gilmour SJ, Zarka DG, Stockinger EJ, Salazar MP, Houghton JM, Thomashow MF. 1998. Low temperature regulation of the Arabidopsis CBF family of AP2 transcriptional activators as an early step in cold-induced COR gene expression. Plant Journal 16: 433-442.
14. Hirsinger C, Salva I, Marbach J, Durr A, Fleck J, Jamet E. 1999. The tobacco extensin gene Ext 1.4 is expressed in cells submitted to mechanical constraints and in cells proliferating under hormone control. Journal of Experimental Botany 50: 343-355.
15. Iliev E, Xu W, Polisensky DH, Oh M-H, Torisky RS, Clouse SD, Braam J. 2002. Transcriptional and posttranscriptional regulation of Arabidopsis TCH4 expression by diverse stimuli. Roles of cis regions and brassinosteroids. Plant Physiology 130: 770-783.
16. Jaffe MJ. 1973. Thigmomorphogenesis: The response of plant growth and development to mechanical stimulation. Planta 114: 143-157.
17. Khan AR, Johnson KA, Braam J, James MNG. 1997. Comparative modeling of the three-dimensional structure of the calmodulin-related TCH2 protein from Arabidopsis. Proteins 27: 144-153.
18. Ling V, Perera IY, Zielinski RE. 1991. Primary structures of Arabidopsis calmodulin isoforms deduced from the sequences of cDNA clones. Plant Physiology 96: 1196-1202.
19. Mauch F, Kmecl A, Schaffrath U, Volrath S, Görlach J, Ward E, Ryals J, Dudler R. 1997. Mechanosensitive expression of a lipoxygenase gene in wheat. Plant Physiology 114: 1561-1566.
20. McCormack E, Braam J. 2003. Calmodulins and related potential calcium sensors of Arabidopsis. New Phytologist 159: 585-598.
21. Mizoguchi T, Irie K, Hirayama T, Hayashida N, Yamaguchi-Shinozaki K, Matsumoto K, Shinozaki K. 1996. A gene encoding a mitogen-activated protein kinase kinase kinase is induced simultaneously with genes for a mitogen-activated protein kinase and an S6 ribosomal protein kinase by touch, cold, and water stress in Arabidopsis thaliana. Proceedings of the National Academy of Sciences, USA 93: 765-769.
22. Müssig C, Biesgen C, Lisso J, Uwer U, Weiler EW, Altmann T. 2000. A novel stress-inducible 12-oxophytodienoate reductase from Arabidopsis thaliana provides a potential link between brassinosteroid-action and jasmonic-acid synthesis. Journal of Plant Physiology 157: 143-152.
23. Oh SA, Kwak JM, Kwun IC, Nam HG. 1996. Rapid and transient induction of calmodulin-encoding gene(s) of Brassica Napus by a touch stimulus. Plant Cell Reports 15: 586-590.
24. +-ATPase, and one of which is induced by mechanical stress. Planta 210: 715-722.
25. Perera IY, Zielinski RE. 1992. Structure and expression of the Arabidopsis CaM-3 calmodulin gene. Plant Molecular Biology 19: 649-664.
26. Polisensky DH, Braam J. 1996. Cold-shock regulation of the Arabidopsis TCH genes and the effects of modulating intracellular calcium levels. Plant Physiology 111: 1271-1279.
27. Purugganan MM, Braam J, Fry SC. 1997. The Arabidopsis TCH4 xyloglucan endotransglycosylase - Substrate specificity, pH optimum, and cold tolerance. Plant Physiology 115: 181-190.
28. Rose JKC, Braam J, Fry SC, Nishitani K. 2002. The XTH family of enzymes involved in xyloglucan endotransglucosylation and endohydtolysis: current perspectives and a new unifying nomenclature. Plant and Cell Physiology 43: 1421-1435.
29. Royo J, Nass N, Matton DP, Okamoto S, Clarke AE, Newbigin E. 1996. A retrotransposon-like sequence linked to the S-locus of Nicotiana Alata is expressed in styles in response to touch. Molecular and General Genetics 250: 180-188.
30. Shirsat AH, Bell A, Spence J, Harris JN. 1996. The Brassica napus exta extensin gene is expressed in regions of the plant subject to tensile stresses. Planta 199: 618-624.
31. 2+ binding protein and shows environmentally induced and tissue-specific regulation. Plant Cell 6: 1553-1565.
32. Tatsuki M, Mori H. 1999. Rapid and transient expression of 1-aminocyclopropane-1-carboxylate synthase isogenes by touch and wound stimuli in tomato. Plant and Cell Physiology 40: 709-715.
33. Verwoerd T, Dekker BM, Hoekema A. 1989. A small-scale procedure for the rapid isolation of plant RNAs. Nucleic Acids Research 17: 2362.
34. Xu W, Purugganan MM, Polisensky DH, Antosiewicz DM, Fry SC, Braam J. 1995. Arabidopsis TCH4, regulated by hormones and the environment, encodes a xyloglucan endotransglycosylase. Plant Cell 7: 1555-1567.
35. Zarka DG, Vogel JT, Cook D, Thomashow MF. 2003. Cold induction of Arabidopsis CBF genes involves multiple ICE (inducer of CBF expression) promoter elements and a cold-regulatory circuit that is desensitized by low temperature. Plant Physiology 133: 910-918.