Detection and identification of Candida species associated with Candida vaginitis by real-time PCR and pyrosequencing

Molecular and Cellular Probes

Volumn 19, Issue 2, 2005, Pages 145-152

  Trama, Jason P ^a   Mordechai, Eli ^a   Adelson, Martin E ^a  

^a Medical Diagnostic Laboratories LLC   (United States)

Author keywords

Candida; Gynecology; Pyrosequencing; Real time PCR; Vaginitis

Indexed keywords

RIBOSOME DNA;

ARTICLE; CANDIDA; CANDIDA ALBICANS; CANDIDA GLABRATA; CANDIDA PARAPSILOSIS; CANDIDA TROPICALIS; CONTROLLED STUDY; DNA EXTRACTION; DNA SEQUENCE; FEMALE; FUNGAL DETECTION; FUNGUS IDENTIFICATION; GENE AMPLIFICATION; GENE TARGETING; HUMAN; HUMAN TISSUE; NUCLEOTIDE SEQUENCE; PLASMID; PRIORITY JOURNAL; REAL TIME POLYMERASE CHAIN REACTION; VAGINA CANDIDIASIS;

BACTERIOLOGICAL TECHNIQUES; CANDIDA; DNA PRIMERS; DNA, FUNGAL; DNA, RIBOSOMAL; FEMALE; FLUORESCENT DYES; HUMANS; PLASMIDS; POLYMERASE CHAIN REACTION; SEQUENCE ANALYSIS, DNA; VAGINITIS;

CANDIDA; CANDIDA ALBICANS; CANDIDA GLABRATA; CANDIDA PARAPSILOSIS; CANDIDA TROPICALIS;

EID: 12944325792     PISSN: 08908508     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.mcp.2004.10.004     Document Type: Article

References (33)

1. J.D. Sobel Vaginitis N Engl J Med 337 1997 1896 1903
2. Diagnosis of Candida vaginitis J Fam Pract 20 1985 19 20
3. J.D. Sobel Pathogenesis and epidemiology of vulvovaginal candidiasis Ann NY Acad Sci 544 1988 547 557
4. M.A. Pfaller Nosocomial candidiasis: emerging species, reservoirs, and modes of transmission Clin Infect Dis 22 2 1996 S89 S94
5. K.C. Hazen, E.J. Baron, A.L. Colombo, C. Girmenia, A. Sanchez-Sousa, and A. del Palacio Comparison of the susceptibilities of Candida spp. to fluconazole and voriconazole in a 4-year global evaluation using disk diffusion J Clin Microbiol 41 2003 5623 5632
6. J.D. Sobel Vulvovaginitis in healthy women Compr Ther 25 1999 335 346
7. M.A. Pfaller, D.J. Diekema, S.A. Messer, L. Boyken, and R.J. Hollis Activities of fluconazole and voriconazole against 1,586 recent clinical isolates of Candida species determined by Broth microdilution, disk diffusion, and Etest methods: report from the ARTEMIS Global Antifungal Susceptibility Program, 2001 J Clin Microbiol 41 2003 1440 1446
8. D.R. Snydman Shifting patterns in the epidemiology of nosocomial Candida infections Chest 123 2003 500S 503S
9. K.C. Hazen New and emerging yeast pathogens Clin Microbiol Rev. 8 1995 462 478
10. P.L. Fidel Jr, J.A. Vazquez, and J.D. Sobel Candida glabrata: review of epidemiology, pathogenesis, and clinical disease with comparison to C. albicans Clin Microbiol Rev 12 1999 80 96
11. P.G. Pappas, J.H. Rex, J.D. Sobel, S.G. Filler, W.E. Dismukes, T.J. Walsh, and J.E. Edwards Guidelines for treatment of candidiasis Clin Infect Dis 38 2004 161 189
12. K.A. Elliott Managing patients with vulvovaginal candidiasis Nurse Pract 23 1998 44 46 49-53
13. ACOG technical bulletin. Vaginitis. Number 226-July 1996 (replaces No. 221, March 1996). Committee on Technical Bulletins of the American College of Obstetricians and Gynecologists. Int J Gynaecol Obstet 54 (1996) 293-302.
14. ACOG technical bulletin. Vaginitis. Number 221-March 1996 (replaces no. 135, November 1989). American College of Obstetricians and Gynecologists. Int J Gynaecol Obstet 53 (1996) 271-80.
15. F.C. Odds, and R. Bernaerts CHROMagar Candida, a new differential isolation medium for presumptive identification of clinically important Candida species J Clin Microbiol 32 1994 1923 1929
16. N.G. Warren, and K.C. Hazen Candida, Cryptococcus, and other yeasts of medical importance P.R. Murray E.J. Barton M.A. Pfaller F.C. Tenover R.H. Yolken Manual of clinical microbiology 1995 American Society for Microbiology Washington, DC 723 737
17. Y.C. Chen, J.D. Eisner, M.M. Kattar, S.L. Rassoulian-Barrett, K. LaFe, and S.L. Yarfitz Identification of medically important yeasts using PCR-based detection of DNA sequence polymorphisms in the internal transcribed spacer 2 region of the rRNA genes J Clin Microbiol 38 2000 2302 2310
18. G. Luo, and T.G. Mitchell Rapid identification of pathogenic fungi directly from cultures by using multiplex PCR J Clin Microbiol 40 2002 2860 2865
19. U. Evertsson, H.J. Monstein, and A.G. Johansson Detection and identification of fungi in blood using broad-range 28S rDNA PCR amplification and species-specific hybridisation Apmis 108 2000 385 392
20. M. Tamura, K. Watanabe, T. Imai, Y. Mikami, and K. Nishimura New PCR primer pairs specific for Candida dubliniensis and detection of the fungi from the Candida albicans clinical isolates in Japan Clin Lab 46 2000 33 40
21. R. Wahyuningsih, H.J. Freisleben, H.G. Sonntag, and P. Schnitzler Simple and rapid detection of Candida albicans DNA in serum by PCR for diagnosis of invasive candidiasis J Clin Microbiol 38 2000 3016 3021
22. C.M. Elie, T.J. Lott, E. Reiss, and C.J. Morrison Rapid identification of Candida species with species-specific DNA probes J Clin Microbiol 36 1998 3260 3265
23. P.M. Holland, R.D. Abramson, R. Watson, and D.H. Gelfand Detection of specific polymerase chain reaction product by utilizing the 5′-3′ exonuclease activity of Thermus aquaticus DNA polymerase Proc Natl Acad Sci USA 88 1991 7276 7280
24. M. Guiver, K. Levi, and B.A. Oppenheim Rapid identification of Candida species by TaqMan PCR J Clin Pathol 54 2001 362 366
25. A. Borst, M.A. Leverstein-Van Hall, J. Verhoef, and A.C. Fluit Detection of Candida spp. in blood cultures using nucleic acid sequence-based amplification (NASBA) Diagn Microbiol Infect Dis 39 2001 155 160
26. J.H. Shin, F.S. Nolte, B.P. Holloway, and C.J. Morrison Rapid identification of up to three Candida species in a single reaction tube by a 5′ exonuclease assay using fluorescent DNA probes J Clin Microbiol 37 1999 165 170
27. R. Selvarangan, U. Bui, A.P. Limaye, and B.T. Cookson Rapid identification of commonly encountered Candida species directly from blood culture bottles J Clin Microbiol 41 2003 5660 5664
28. M. Ronaghi, M. Uhlen, and P. Nyren A sequencing method based on real-time pyrophosphate Science 281 1998 363 365
29. F. Ausubel, R. Brent, R.E. Kingston, D.D. Moore, J.G. Seidman, and J.A. Smith Short protocols in molecular biology 3rd ed 1997 Wiley New York
30. T.J. White, T.D. Burns, S.B. Lee, and J.W. Taylor Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics M.A. Innis D.H. Helfand J.J. Sninsky T.J. White PCR protocols 1990 Academic Press, Inc San Diego 315 322
31. S. Singh, J.D. Sobel, P. Bhargava, D. Boikov, and J.A. Vazquez Vaginitis due to Candida krusei: epidemiology, clinical aspects, and therapy Clin Infect Dis 35 2002 1066 1070
32. M.A. Pfaller, and D.J. Diekema Twelve years of fluconazole in clinical practice: global trends in species distribution and fluconazole susceptibility of bloodstream isolates of Candida Clin Microbiol Infect 10 1 2004 11 23
33. M.A. Pfaller, S.A. Messer, L. Boyken, R.J. Hollis, C. Rice, and S. Tendolkar In vitro activities of voriconazole, posaconazole, and fluconazole against 4,169 clinical isolates of Candida spp. and Cryptococcus neoformans collected during 2001 and 2002 in the ARTEMIS global antifungal surveillance program Diagn Microbiol Infect Dis 48 2004 201 205