Distribution of HIV-1 subtypes among HIV-seropositive patients in the interior of Cote d'Ivoire

Journal of Acquired Immune Deficiency Syndromes

Volumn 23, Issue 5, 2000, Pages 430-436

  Nkengasong, John N ^a,b   Luo, Chi Cheng ^c   Abouya, Lucien ^a   Pieniazek, Danuta ^c   Maurice, Chantal ^a   Sassan Morokro, Madeleine ^a   Ellenberger, Denis ^c   Hu, Dale J ^b   Pau, Chou Pong ^c   Dobbs, Trudy ^c   Respess, Richard ^c   Coulibaly, Doulourou ^d   Coulibaly, Issa Malik ^d   Wiktor, Stefan Z ^a,b   Greenberg, Alan E ^b   Rayfield, Mark ^b  

^a Project RETRO CI Abidjan   (Côte d’Ivoire)

^b CENTERS FOR DISEASE CONTROL AND PREVENTION   (United States)

^c NATL CENTER FOR INFECTIOUS DISEASES   (United States)

^d National AIDS/STD/TB Control Program   (Côte d’Ivoire)

Author keywords

Cote d'Ivoire, Africa; Genetic subtypes; HIV 1

Indexed keywords

ADULT; ARTICLE; COTE D'IVOIRE; ENZYME IMMUNOASSAY; FEMALE; HUMAN; HUMAN CELL; HUMAN IMMUNODEFICIENCY VIRUS 1; HUMAN IMMUNODEFICIENCY VIRUS INFECTION; MAJOR CLINICAL STUDY; MALE; MONONUCLEAR CELL; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; RESTRICTION FRAGMENT LENGTH POLYMORPHISM; TUBERCULOSIS; VIRUS STRAIN;

EID: 12944300458     PISSN: 15254135     EISSN: None     Source Type: Journal    
DOI: 10.1097/00042560-200004150-00011     Document Type: Article

References (38)

1. Sylla-Koko F, Anglaret X, Traoré-Anaky MF, et al. Séroprevalence de l'infection a VIH dans les consultations prénatales d Abidjan, Côte d'Ivoire. Med Mal Infect 1997;27:127-8.
2. Abouya YL, Coulibaly IM, Wiktor SZ, et al. The Côte d'Ivoire national HIV counseling and testing program for tuberculosis patients: implementation and analysis of epidemiological data. AIDS 1998;12:505-12.
3. Ghys PD, Diallo MO, Ettiegne Traore V, et al. Genital ulcers associated with human immunodeficiency virus related immunosuppression in female sex workers in Abidjan, Ivory Coast. J Infect Dis 1995;172:1371-4.
4. Ellenberger D, Pieniazek D, Nkengasong JN, et al. Genetic analysis of human immunodeficiency virus in Abidjan, Ivory Coast reveals predominance of HIV type 1 subtype A and introduction of subtype G. AIDS Res Hum Retroviruses 1999;15:3-9.
5. Janssens W, Buve A, Nkengasong JN. The puzzle of HIV-1 subtypes in Africa. AIDS 1997;11:705-12.
6. Myers G, Korber B, Foley B, Jeang K-T, Mellors JW, Wain Hobson S. Human retroviruses and AIDS. 1996;III-88-90.
7. Vanden Haesevelde M, Decourt JL, Deleys R, et al. Genomic cloning and complete sequence analysis of a highly divergent African human immunodeficiency virus isolate. J Virol 1994;68: 1586-96.
8. Gurtler LG, Hauser PH, Eberle J, et al. A new subtype of human immunodeficiency virus type 1 (MVP 5180) from Cameroon. J Virol 1994;68:1581-5.
9. Simon F, Mauclere P, Roques P et al. Identification of a new human immunodeficiency virus type 1 distinct from group M and group O. Nat Med 1998;4:1032-6.
10. Simon F, Ly TD, Baillou-Beaufils A, et al. Sensitivity of screening kits for anti-HIV-1 subtype O antibodies. AIDS 1994;8:1628-9.
11. Schable C, Zekeng L, Chou-Pau P, et al. Sensitivity of United States HIV antibody tests for detection of HIV-1 group O infections. Lancet 1994;344:1333-4.
12. Apetrei CI, Loussert-Ajaka I, Descamps D, et al. Lack of screening test sensitivity during HIV-1 non-subtype B seroconversion. AIDS 1996;10:F57-60.
13. Nkengsong JN, Kalou M, Maurice C, et al. Comparison of NucliSens and Amplicor assays for quantification of human immunodeficiency virus type 1 (HIV-1) RNA in plasma of persons with HIV-1 subtype A infection in Abidjan, Côte d'Ivoire. J Clin Microbiol 1998;36:2495-8.
14. Parekh B, Phillips S, Granade TC, et al. Impact of HIV type 1 subtype variation on viral RNA quantitation. AIDS Res Hum Retroviruses 1999;15:133-42.
15. Alaeus A, Lidman K, Sonnerborg A, Abert J. Subtype-specific problems with quantification of plasma HIV-1 RNA. AIDS 1997; 11:859-65.
16. Nkengasong JN, Maurice C, Koblavi S, et al. Evaluation of HIV serial and parallel serologic testing algorithms in Abidjan, Côte d'Ivoire. AIDS 1999;13:109-17.
17. De Cock K, Porter A, Kouadio J, et al. Rapid and specific diagnosis of HIV-1 and HIV-2 infections: evaluation of testing strategies. AIDS 1990;1:875-8.
18. Pau C-P, Lee-Thomas S, Auwanit W, et al. Highly specific V3 peptide enzyme immunoassay for serotyping HIV-1 specimens from Thailand. AIDS 1993;7:337-10.
19. Ramos A, Tanuri A, Schechter M, et al. HIV-1 dual infections and recombinants are an integral part of the HIV epidemic in Brazil. Emerg Infect Dis 1999;5:65-74.
20. Luo CC, Downing RG, Dela Torre N, et al. The development and evaluation of a probe hybridization method for subtyping HIV type 1 infection in Uganda. AIDS Res Hum Retroviruses 1998;14: 691-4.
21. Felsenstein J. PHYLIP. phylogeny inference package (version 3.2). Cladistics 1989;5:164-6.
22. Maidak BL, Larsen N, McCaughey MJ, et al. The ribosomal database project. Nucleic Acid Res 1994;22:3485-7.
23. Hu DJ, Dondero TJ, Rayfield M, et al. The emerging genetic diversity of HIV: the importance of global surveillance for diagnostics, research, and intervention. JAMA 1996;275:210-16.
24. Carr JK, Laukkanen T, Salminen MO, et al. Characterization of subtype A HIV-1 from Africa by full genome sequencing. AIDS 1999;13:1819-26.
25. Janssens W, Heyndrickx L, Van de Peer Y, et al. Molecular phylogeny of part of the env gene of HIV-1 strains isolated in Côte d'Ivoire. AIDS 1994;8:21-6.
26. Audoly G, Fillon S, Pinay P, Desgranges C. In vivo and vitro sequence diversity of the V3 env region of HIV type 1 from Ivory Coast. AIDS Res Hum Retroviruses 1996;12:1073-5.
27. Nkengasong JN, Sylla-Koko F, Peeters M, et al. HIV-1 group O virus infection in Abidjan, Côte d'Ivoire. AIDS 1998;12:1565-6.
28. Peeters M, Koumare B, Mulanga C, et al. Genetic subtypes of HIV type 1 and HIV-2 strains in commercial sex workers from Bamako, Mali. AIDS Res Hum Retroviruses 1998;14:51-8.
29. Ishikawa K, Janssens W, Branful J, et al. Genetic and phylogenetic analysis of HIV type 1 env subtypes in Ghana. AIDS Res Hum Retroviruses 1996;12:1575-78.
30. Nkengasong JN, Janssens W, Heyndrickx L., et al. Genotypic subtypes of HIV-1 in Cameroon. AIDS 1994;8:1405-12.
31. Delaporte E, Janssens W, Peeters M, et al. Epidemiological and molecular characteristics of HIV infection in Gabon (1986-1994). AIDS 1996;10:903-10.
32. Delwart EL, Shpaer EG, Louwagie J, et al. Genetic relationships determined by a DNA heteroduplex mobility assay: analysis of HIV-1 env genes. Science 1993;262:1257-61.
33. Janini LM, Peniazek D, Peralta JM, et al. Identification of single and dual infections with distinct subtypes of human immunodeficiency virus type 1 by using restriction fragment length polymorphism analysis. Virus Genes 1996;13:69-81.
34. Komurian-Pradel F, Pelloquin F, Sonoda S, Osame M, De The G. Geographic subtypes demonstrated by RFLP following PCR in the LTR region of HTLV-I. AIDS Res Hum Retroviruses 1992;8:429-34.
35. Nkengasong JN, Willems B, Janssens W, et al. Lack of correlation between V3-loop peptide enzyme immunoassay serologic subtyping and genetic sequencing. AIDS 1998;12:1405-12.
36. Hoelscher M1, Hanker S, Barin F, et al. HIV-1 V3 serotyping in Tanzania samples: possible reasons for mismatching with genetic subtyping. AIDS Res Hum Retroviruses 1998;14:139-49.
37. Cheingsong-Popov R, Williamson C, Lister S, et al. Usefulness of HIV-1 V3-loop serotyping in studying the HIV-1 epidemic in South Africa. AIDS 1998;12:949-50.
38. Korber B, Macinnes K, Smith RF, Myers G. Mutational trends in V3-loop protein sequences observed in different genetic lineages of human immunodeficiency virus type 1. J Virol 1994;69:6730-44.