Little cherry virus-2: Sequence and genomic organization of an unusual member of the Closteroviridae

Archives of Virology

Volumn 150, Issue 1, 2005, Pages 107-123

  Rott, M E ^a,b   Jelkmann, W ^a  

^a INSTITUTE FOR EPIDEMIOLOGY AND PATHOGEN DIAGNOSTICS   (Germany)

^b Canadian Food Inspection Agency   (Canada)

Author keywords

[No Author keywords available]

Indexed keywords

VIRUS RNA;

AMINO ACID SEQUENCE; ARTICLE; CLASSIFICATION; CLOSTEROVIRIDAE; GENETICS; ISOLATION AND PURIFICATION; MOLECULAR GENETICS; OPEN READING FRAME; PRUNUS; VIROLOGY; VIRUS GENOME;

AMINO ACID SEQUENCE; CLOSTEROVIRIDAE; GENOME, VIRAL; MOLECULAR SEQUENCE DATA; OPEN READING FRAMES; PRUNUS; RNA, VIRAL;

AMPELOVIRUS; CLOSTEROVIRIDAE; FLEXIVIRIDAE; GRAPEVINE LEAFROLL-ASSOCIATED VIRUS 3; LITTLE CHERRY VIRUS 1; LITTLE CHERRY VIRUS 2; VITIS;

EID: 12944275406     PISSN: 03048608     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00705-004-0382-z     Document Type: Article

References (49)

1. Agranovsky AA (1996) Principles of molecular organization, expression and evolution of closteroviruses: over the barriers. Adv Virus Res 47: 119-158
2. Agranovsky AA, Koonin EV, Boyko VP, Maiss E, Frötschl R, Lunina NA, Atabekov JG (1994) Beet yellows closterovirus: complete genome structure and identification of a leader papain-like thiol protease. Virology 198: 311-324
3. Alzhanova DV, Hagiwara Y, Peremyslov VV, Dolja VV (2000) Genetic analysis of the cell-to-cell movement of beet yellows closterovirus. Virology 268: 192-200
4. Ayllon MA, Lopez C, Navas-Castillo J, Mawassi M, Dawson WO, Guerri J, Flores R, Moreno P (1999) New defective RNAs from citrus tristeza virus: evidence for a replicase-driven template switching mechanism in their generation. J Gen Virol 80: 817-821
5. Borodovsky M, McIninch J (1993) Recognition of genes in DNA sequences with ambiguities. Biosystems 30: 161-171
6. Che XB, Dawson WO, Bar-Joseph M (2003) Defective RNAs of Citrus tristeza virus analogous to crinivirus genomic RNAs. Virology 310: 298-309
7. Chen X, Wu R (1997) Direct amplification of unknown genes and fragments by Uneven polymerase chain reaction. Gene 185: 195-199
8. Coutts RHA, Livieratos IC (2003) Nucleotide sequence and genome organization of Cucurbit yellow stunting disorder virus RNA1. Arch Virol 148: 2055-2062
9. Eastwell KC, Bernardy MG (2001) Partial characterization of a closterovirus associated with apple mealybug-transmitted little cherry disease in North America. Phytopathology 91: 268-273
10. Gorbalenya AE, Blinov VM, Donchenko AP, Koonin EV (1989) An NTP-binding motif is the most conserved sequence in a highly diverged monophyletic group of proteins involved in positive strand RNA viral replication. J Mol Evol 28: 256-268
11. Gorbalenya AE, Koonin EV (1993) Helicases: amino acid sequence comparison and structure-function relationship. Curr Opin Struct Biol 3: 419-429
12. Hadjeb N, Berkowitz GA (1996) Preparation of T-over-hang vectors with high PCR product cloning efficiency. BioTechniques 20: 20-22
13. Hartono S, Natsuaki T, Genda Y, Okuda S (2003) Nucleotide sequence and genome organization of Cucumber yellows virus, a member of the genus crinivirus. J Gen Virol 84: 1007-1012
14. Jelkmann W (1995) Cherry virus A: cDNA cloning of dsRNA, nucleotide sequence analysis and serology reveal a new plant capillovirus in sweet cherry. J Gen Virol 76: 2015-2024
15. Jelkmann W, Fechtner B, Agranovsky AA (1997) Complete genome structure and phylogenetic analysis of little cherry virus, a mealybug transmissible closterovirus. J Gen Virol 78: 2067-2071
16. Karasev AV (2000) Genetic diversity and evolution of closteroviruses. Ann Rev Phytopath 38: 293-324
17. Karasev AV, Boyko VP, Gowda S, Nikolaeva OV, Hilf ME, Koonin EV, Niblett CL, Cline K, Gumpf DJ, Lee RF (1995) Complete sequence of the citrus tristeza virus RNA genome. Virology 208: 511-520
18. Karasev AV, Nikolaeva OV, Mushegian AR, Lee RF, Dawson WO (1996) Organization of the 3′ terminal half of beet yellow stunt virus genome and implications for the evolution of closteroviruses. Virology 221: 199-207
19. Klaassen VA, Boeshore ML, Koonin EV, Tian T, Falk BW (1995) Genome structure and phylogenetic analysis of lettuce infectious yellows virus, a whitefly-transmitted, bipartite closterovirus. Virology 208: 99-110
20. Kong P, Rubio L, Polek M, Falk BW (2000) Population structure and genetic diversity within California Citrus tristeza virus (CTV) isolates. Virus Genes 21: 139-145
21. Koonin EV (1991) The phylogeny of RNA-dependent RNA polymerases of positive-strand RNA viruses. J Gen Virol 72: 2197-2206
22. Koonin EV, Dolja VV (1993) Evolution and taxonomy of positive-strand RNA viruses: implications of comparative analysis of amino acid sequences. Crit Rev Biochem Mol Biol 28: 375-430
23. Kormelink R, de Haan P, Meurs C, Peters D, Goldbach R (1992) The nucleotide sequence of the mRNA segment of tomato spotted wilt virus, a bunyavirus with two ambisense RNA segments [published erratum: J Gen Virol 1993 74: 790]. J Gen Virol 73: 2795-2804
24. Kozak M (1987) An analysis of 5′-noncoding sequences from 699 vertebrate messenger RNAs. Nucleic Acids Res 15: 8125-8148
25. Kreuze JF, Savenkov EI, Valkonen JPT (2002) Complete genome sequence and analyses of the subgenomic RNAs of Sweet potato chlorotic stunt virus reveal several new features for the genus Crinivirus. J Virol 76: 9260-9270
26. Ling KS, Gonsalves D (1997) Recent information on the molecular characterization of grapevine leafroll virus-3. In: Vesely D (ed), Recent research development in plant pathology - filamentous viruses of woody plants. Research Signpost, Trivandrum, India
27. Ling KS, Zhu HY, Drong RF, Slightom JL, McFerson JR, Gonsalves D (1998) Nucleotide sequence of the 3′-terminal two-thirds of the grapevine leafroll-associated virus-3 genome reveals a typical monopartite closterovirus. J Gen Virol 79: 1299-1307
28. Little A, Fazeli CF, Rezaian MA (2001) Hypervariable genes in grapevine leafroll associated virus 1. Virus Res 80: 109-116
29. Livieratos IC, Coutts RHA (2002) Nucleotide sequence and phylogenetic analysis of Cucurbit yellow stunting disorder virus RNA 2. Virus Genes 24: 225-230
30. Martelli G, Agranovsky A, Bar-Joseph M, Boscia D, Candresse T, Coutts R, Dolja VV, Falk B, Gonsalves D, Jelkmann W, Karasev AV, Minafra A, Namba S, Vetten H, Wisler G, Yoshikawa N (2002) The family Closteroviridae revised. Arch Virol 147: 2039-2044
31. Martelli GP, Agranovsky AA, Bar-Joseph M, Boscia D, Candresse T, Coutts RHA, Dolja VV, Duffus JD, Falk BW, Gonsalves D, Jelkmann W, Karasev A, Minafra A, Murant AF, Namba S, Niblett CL, Vetten HJ, Yoshikawa N (2000) Family Closteroviridae. In: Van Regenmortel MHV, Fauquet CM, Bishop DHL, Carstens EB, Estes MK, Lemon SM, Maniloff J, Mayo MA, McGeoch DJ, Pringle CR, Wickner RB (eds), Virus taxonomy. Classification and nomenclature of viruses. Seventh Report of the International Committee on Taxonomy of Viruses. Academic Press, San Diego
32. Mawassi M, Mietkiewska E, Gofman R, Yang G, Bar-Joseph M (1996) Unusual sequence relationships between two isolates of citrus tristeza virus. J Gen Virol 77: 2359-2364
33. Mawassi M, Satyanarayana T, Albiach-Marti MR, Gowda S, Ayllon MA, Robertson C, Dawson WO (2000) The fitness of citrus tristeza virus defective RNAs is affected by the lengths of their 5′- and 3′-termini and by the coding capacity. Virology 275: 42-56
34. Mawassi M, Satyanarayana T, Gowda S, Albiach-Marti MR, Robertson C, Dawson WO (2000) Replication of heterologous combinations of helper and defective RNA of citrus tristeza virus. Virology 267: 360-369
35. Melzer MJ, Karasev AV, Sether DM, Hu JS (2001) Nucleotide sequence, genome organization and phylogenetic analysis of pineapple mealybug wilt-associated virus-2. J Gen Virol 82: 1-7
36. Napuli AJ, Falk BW, Dolja VV (2000) Interaction between HSP70 homolog and filamentous virions of the beet yellows virus. Virology 274: 232-239
37. Peng CW, Dolja VV (2000) Leader proteinase of the beet yellows closterovirus: mutation analysis of the function in genome amplification. J Virol 74: 9766-9770
38. Peremyslov VV, Hagiwara Y, Dolja VV (1998) Genes required for replication of the 15.5-kilobase RNA genome of a plant closterovirus. J Virol 72: 5870-5876
39. Raine J, McMullen RD, Forbes RD (1986) Transmission of the agent causing little cherry disease by the apple mealybug Phenacoccus aceris and the dodder Cuscuta lupuliformis. Can J Plant Pathol 8: 6-11
40. Rosciglione B, Gugerli P (1989) Transmission of grapevine leafroll disease and an associated closterovirus to healthy grapevine by the mealybug Planococcus ficus. Phytoparasitica 17: 63
41. Rott ME, Jelkmann W (2001) Characterization and detection of several filamentous viruses of cherry: adaptation of an alternative cloning method (DOP-PCR), and modification of an RNA extraction protocol. Eur J Plant Pathol 107: 411-420
42. Rott ME, Jelkmann W (2001) Detection and partial characterization of a second closterovirus associated with little cherry disease, little cherry virus-2. Phytopathology 91: 261-267
43. Rozanov MN, Koonin EV, Gorbalenya AE (1992) Conservation of the putative methyltransferase domain: a hallmark of the 'Sindbis-like' supergroup of positive-strand RNA viruses. J Gen Virol 73: 2129-2134
44. Rubio L, Ayllon MA, Kong P, Fernandez A, Polek M, Guerri J, Moreno P, Falk BW (2001) Genetic variation of Citrus tristeza virus isolates from California and Spain: evidence for mixed infections and recombination. J Virol 75: 8054-8062
45. Rubio L, Yeh HH, Tian T, Falk BW (2000) A heterogeneous population of defective RNAs is associated with lettuce infectious yellows virus. Virology 271: 205-212
46. Takahashi M, Toriyama S, Hamamatsu C, Ishihama A (1993) Nucleotide sequence and possible ambisense coding strategy of rice stripe virus RNA segment 2. J Gen Virol 74: 769-773
47. Theilmann J, Mozafari J, Reade R, Wu Z, Xie W, Jesperson G, Bernardy M, Eastwell KC, Rochon D (2002) Partial nucleotide sequence and genome organization of a Canadian isolate of Little cherry virus and development of an enzyme-linked immunosorbent assay-based diagnostic test. Phytopathology 92: 87-98
48. Zhu HY, Ling KS, Goszczynski DE, McFerson JR, Gonsalves D (1998) Nucleotide sequence and genome organization of grapevine leafroll-associated virus-2 are similar to beet yellows virus, the closterovirus type member. J Gen Virol 79: 1289-1298
49. Zinovkin RA, Erokhina TN, Lesemann DE, Jelkmann W, Agranovsky AA (2003) Processing and subcellular localization of the leader papain-like proteinase of Beet yellows closterovirus. J Gen Virol 84: 2265-2270