MyMED: A database system for biomedical research on MEDLINE data

IBM Systems Journal

Volumn 43, Issue 4, 2004, Pages 756-767

  Lewis, Kimberly N ^a   Robinson, Mark D ^b   Hughes, Timothy R ^b   Hogue, Christopher W V ^c,d  

^a Bioinformatics Development   (Singapore)

^b Banting and Best Department of Medical Research   (Canada)

^c MOUNT SINAI HOSPITAL   (Canada)

^d UNIVERSITY OF TORONTO   (Canada)

Author keywords

[No Author keywords available]

Indexed keywords

BIOTECHNOLOGY; DATA MINING; MEDICINE; ONLINE SEARCHING; QUERY LANGUAGES; RESEARCH; WEBSITES;

BIOMEDICAL JOURNAL; BIOMEDICAL RESEARCH; TEXT MINING;

DATABASE SYSTEMS;

EID: 12944263573     PISSN: 00188670     EISSN: None     Source Type: Journal    
DOI: 10.1147/SJ.2004.5386762     Document Type: Article

References (18)

1. United States National Library of Medicine, National Institutes of Health, http://www.nlm.nih.gov/.
2. The Blueprint Initiative, http://www.blueprint.org/.
3. I. Donaldson, J. Martin, B. De Bruijn, C. Wolting, V. Lay, B. Tuekam, S. Zhang, B. Baskin, G. D. Bader, K. Michalickova, T. Pawson, and C. W. Hogue, "PreBIND and Textomy - Mining the Biomedical Literature for Protein - Protein Interactions Using a Support Vector Machine," BMC Bioinformatics 4, No. 1, (March 27, 2003).
4. XSL Transformations (XSL T), World Wide Web Consortium (W3C), http://www.w3.org/TR/xslt.
5. MEDLINE Characters, United States National Library of Medicine, http://www.nlm.nih.gov/databases/dtd/medlinecharacters.html.
6. Documentation for Distribution of 2003 Baseline MEDLINE Database, United States National Library of Medicine, http://www.nlm.nih.gov/bsd/ licensee/2003baselinedoc.html.
7. The Perl Directory - perl. org, The Perl Foundation, http://www.perl.org/.
8. DB2 Net Search Extender - Product Overview - IBM Software, IBM Corporation, http://www-3.ibm.com/software/data/db2/extenders/netsearch/ index.html.
9. Unicode Home Page, Unicode Inc., http://www.unicode.org/.
10. UML, Object Management Group, http://www.uml.org/.
11. Medical Subject Headings - Home Page, United States National Library of Medicine, http://www.nlm.nih.gov/mesh/meshhome.html.
12. XML Path Language (Xpath), World Wide Web Consortium (W3C), http://www.w3.org/TR/xpath.
13. DB2 XML Extender - Download - IBM Software, IBM Corporation, http://www-3.ibm.com/software/data/db2/extenders/xmlext/downloads.html.
14. XML Extender Administration and Programming Version 7, IBM Corporation, (1999, 2000), pp. 131-147.
15. Text Information Extender Administration and User's Guide Version 7.2 IBM Corporation (1995, 2001), pp. 99-105.
16. G. D. Bader and C. W. Hogue, "BIND - A Data Specification for Storing and Describing Biomolecular Interactions, Molecular Complexes and Pathways," Bioinformatics 16, No. 5, 465-77 (2000).
17. BioMed Central About Us Data Mining Research, Biomed Central Ltd., http://www.biomedcentral.com/info/about/datamining/.
18. K. Michalickova, G. D. Bader, M. Dumontier, H. Lieu, D. Betel, R. Isserlin, and C. W. Hogue, "SeqHound: Biological Sequence and Structure Database as a Platform for Bioinformatics Research," BMC Bioinformatics 3, No. 1, (2002).