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Volumn 62, Issue 2, 2005, Pages 175-181

INTROnSPECTIVE and NORA: Computerized compositional characterization of regions within introns and around start codons on the basis of non-randomness analysis

Author keywords

Composition; Introns; Non randomness analysis; Shine Dalgarno sequences; Software

Indexed keywords

ARTICLE; CHROMOSOME; COMPUTER ANALYSIS; COMPUTER PROGRAM; GENBANK; GENOME; INTRON; PRIORITY JOURNAL; RANDOMIZATION; START CODON;

EID: 12844264337     PISSN: 0165022X     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.jbbm.2004.11.002     Document Type: Article
Times cited : (1)

References (11)
  • 1
    • 0037428283 scopus 로고    scopus 로고
    • Non-randomness in Shine-Dalgarno regions: Links to gene characteristics
    • A. Fuglsang, and J. Engberg Non-randomness in Shine-Dalgarno regions: links to gene characteristics Biochem. Biophys. Res. Commun. 302 2003 296 301
    • (2003) Biochem. Biophys. Res. Commun. , vol.302 , pp. 296-301
    • Fuglsang, A.1    Engberg, J.2
  • 2
    • 0242267013 scopus 로고    scopus 로고
    • Association of the φ nucleotide to codon bias, amino acid usage and expressivity: Differences between Bacillus subtilis and Escherichia coli
    • A. Fuglsang Association of the φ nucleotide to codon bias, amino acid usage and expressivity: differences between Bacillus subtilis and Escherichia coli Acta Pathol. Microbiol. Immunol. Scand. 111 2003 926 930
    • (2003) Acta Pathol. Microbiol. Immunol. Scand. , vol.111 , pp. 926-930
    • Fuglsang, A.1
  • 3
    • 0345276496 scopus 로고    scopus 로고
    • Lactic acid bacteria as prime candidates for codon optimization
    • A. Fuglsang Lactic acid bacteria as prime candidates for codon optimization Biochem. Biophys. Res. Commun. 312 2003 285 291
    • (2003) Biochem. Biophys. Res. Commun. , vol.312 , pp. 285-291
    • Fuglsang, A.1
  • 4
    • 2442710175 scopus 로고    scopus 로고
    • Evolution of prokaryotic DNA: Intragenic and extragenic divergences observed with orthologs from three related species
    • A. Fuglsang Evolution of prokaryotic DNA: intragenic and extragenic divergences observed with orthologs from three related species Mol. Biol. Evol. 21 2004 1152 1159
    • (2004) Mol. Biol. Evol. , vol.21 , pp. 1152-1159
    • Fuglsang, A.1
  • 5
    • 2442528810 scopus 로고    scopus 로고
    • Compositional nonrandomness upstream of start codons in archaebacteria
    • A. Fuglsang Compositional nonrandomness upstream of start codons in archaebacteria Gene 332 2004 89 95
    • (2004) Gene , vol.332 , pp. 89-95
    • Fuglsang, A.1
  • 6
    • 4043074964 scopus 로고    scopus 로고
    • Bioinformatic analysis of the link between gene composition and expressivity in Saccharomyces cerevisiae and Schizosaccharomyces pombe
    • A. Fuglsang Bioinformatic analysis of the link between gene composition and expressivity in Saccharomyces cerevisiae and Schizosaccharomyces pombe Antonie van Leeuwenhoek 86 2004 135 147
    • (2004) Antonie Van Leeuwenhoek , vol.86 , pp. 135-147
    • Fuglsang, A.1
  • 7
    • 0016154301 scopus 로고
    • The 3′-terminal sequence of Escherichia coli 16S ribosomal RNA: Complementarity to nonsense triplets and ribosome binding sites
    • J. Shine, and L. Dalgarno The 3′-terminal sequence of Escherichia coli 16S ribosomal RNA: complementarity to nonsense triplets and ribosome binding sites Proc. Natl. Acad. Sci. U. S. A. 71 1974 1342 1346
    • (1974) Proc. Natl. Acad. Sci. U. S. A. , vol.71 , pp. 1342-1346
    • Shine, J.1    Dalgarno, L.2
  • 8
    • 0016610995 scopus 로고
    • Determinant of cistron specificity in bacterial ribosomes
    • J. Shine, and L. Dalgarno Determinant of cistron specificity in bacterial ribosomes Nature 254 1975 34 38
    • (1975) Nature , vol.254 , pp. 34-38
    • Shine, J.1    Dalgarno, L.2
  • 10
    • 4043065080 scopus 로고    scopus 로고
    • Nucleotides downstream of start codons show marked non-randomness in Escherichia coli but not in Bacillus subtilis
    • A. Fuglsang Nucleotides downstream of start codons show marked non-randomness in Escherichia coli but not in Bacillus subtilis Antonie van Leeuwenhoek 86 2004 149 158
    • (2004) Antonie Van Leeuwenhoek , vol.86 , pp. 149-158
    • Fuglsang, A.1
  • 11
    • 2442655226 scopus 로고    scopus 로고
    • Similar rates but different modes of sequence evolution in introns and at exonic silent sites in rodents: Evidence for selectively driven codon usage
    • J.V. Chamary, and L.D. Hurst Similar rates but different modes of sequence evolution in introns and at exonic silent sites in rodents: evidence for selectively driven codon usage Mol. Biol. Evol. 21 2004 1014 1023
    • (2004) Mol. Biol. Evol. , vol.21 , pp. 1014-1023
    • Chamary, J.V.1    Hurst, L.D.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.