MCQTL: Multi-allelic QTL mapping in multi-cross design

Bioinformatics

Volumn 21, Issue 1, 2005, Pages 128-130

  Jourjon, Marie Françoise ^a   Jasson, Sylvain ^a   Marcel, Jacques ^a   Ngom, Baba ^a   Mangin, Brigitte ^a  

^a CEMAGREF   (France)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; COMPUTER PROGRAM; DIALLEL ANALYSIS; GENE LOCATION; GENETIC MODEL; GENETIC SELECTION; GENOTYPE; LINEAR REGRESSION ANALYSIS; MARKER GENE; MOLECULAR PHYLOGENY; MULTIGENE FAMILY; PRIORITY JOURNAL; PROCESS DESIGN; QUANTITATIVE TRAIT LOCUS MAPPING;

EID: 12744274798     PISSN: 13674803     EISSN: 13674811     Source Type: Journal    
DOI: 10.1093/bioinformatics/bth481     Document Type: Article

References (18)

1. Arcade,A., Labourdette,A., Falque,M., Mangin,B., Chardon,F., Charcosset,A. and Joets,J. (2004) BioMercator: integrating genetic maps and QTL towards discovery of candidate genes. Bioinformatics, 20 2324-2326.
2. Bink,M.C.A.M., Boer,M.P., ter Braake,C.J.F. and Jansen,H. (2004) A flexible Bayesian framework for multiple QTL mapping in pedigreed populations. In Proceedings of PAG XII, San Diego, CA, January 10-14.
3. Broman,W.B., Wu,H., Sen,S. and Churchill,G.A. (2003) R/qtl: QTL mapping in experimental crosses. Bioinformatics, 19, 889-890.
4. Charcosset,A., Mangin,B., Moreau,L., Combes,L., Jourjon,M.-F. and Gallais,A. (2001) Heterosis in maize investigated using connected RIL populations. Quantitative genetics and breeding methods: the way ahead. Les colloques no. 96, INRA editions, Paris.
5. Churchill,G.A. and Doerge,R.W. (1994) Empirical threshold values for quantitative trait mapping. Genetics, 138, 963-971.
6. Haley,C.S. and Knott,S.A. (1992) A simple regression method for mapping quantitative trait loci in line crosses using flanking markers. Heredity, 69, 315-324.
7. Hitzemann,R., Malmanger,B., CooperS., Coulombe,S., Reed,C., Demarest,K., Koyner,J., Cipp,L., Flint,J., Talbot,C. et al. (2002) Multiple cross mapping (MCM) markedly improves the localization of a QTL for ethanol-induced activation. Genes Brain Behav., 4, 214-222.
8. Jannink,J.-L. and Wu,X.-L. (2003) Estimating allelic number and indentity in state of QTL in interconnected families. Genet. Res. 81, 133-144.
9. Khatkar,M.S., Thomson,P.C., Tammen,I. and Raadsma,H.W. (2004) Quantitative trait loci mapping in dairy cattle: review and meta-analysis. Genet. Sel. Evol., 36, 163-190.
10. Lincoln,S.E., Daly,M.J. and Lander,E.S. (1993) Constructing genetic linkage maps with MAPMAKER/EXP version 3.0. A tutorial and reference manual. Technical Report, 3rd edn, Whitehead Institute for Biomedical Research.
11. Manly,K.F. and Olson,J.M. (1999) Overview of QTL mapping software and introduction to Map Manager QT. Mamm. Genome, 10 327-334.
12. Muranty,H. (1996) Power of tests for quantitative trait loci detection using full-sib families in different schemes. Heredity, 76, 156-165.
13. Rebaï,A. and Goffinet,B. (2000) More about QTL mapping with diallel design. Genet. Res., 15, 243-247.
14. Seaton,G., Haley,C.S., Knott,S.A., Kearsey,M. and Visscher,P.M. (2002) QTL Express: mapping quantitative trait loci simple and complex pedigrees. Bioinformatics, 18, 339-340.
15. Schiex,T. and Gaspin,C. (1997) Cartagene: constructing and joining maximum likelihood genetic maps. In Proceedings of ISMB'97, Halkidiki, Greece, June.
16. Xie,C., Gessler,D.G. and Xu,S. (1998) Combining different line crosses for mapping quantitative trait loci using the identical by descent-based variance component method. Genetics, 149, 1139-1146.
17. Xu,S. (1998) Mapping quantitative trait loci using multiple families of line crosses. Genetics, 148, 517-524.
18. Zheng,Z.-B. (1993) Theoretical basis for separation of multiple linked gene effects in mapping quantitative trait loci. Proc. Natl Acad. Sci. USA, 136, 1457-1468.