Responses surface methods for optimizing and improving reproducibility of crystal growth

Methods in Enzymology

Volumn 276, Issue , 1997, Pages 74-99

  Carter Jr , Charles W ^a  

^a NONE

Author keywords

[No Author keywords available]

Indexed keywords

RNA POLYMERASE; TRANSFER RNA;

CRYOBIOLOGY; CRYSTALLIZATION; MACROMOLECULE; PRIORITY JOURNAL; PROTEIN STRUCTURE; REVIEW; SOLUBILITY;

EID: 12644251992     PISSN: 00766879     EISSN: None     Source Type: Book Series    
DOI: 10.1016/S0076-6879(97)76051-8     Document Type: Article

References (44)

1. C. W. Carter, Jr., and C. W. Carter, J. Biol. Chem. 254, 12219 (1979).
2. C. W. Carter, Jr., E. T. Baldwin, and L. Frick, J. Cryst. Growth 90, 60 (1988).
3. C. W. Carter, Jr., METHODS: A Companion to Methods in Enzymology 1, 12 (1990).
4. C. W. Carter, Jr., in "Crystallization of Proteins and Nucleic Acids, A Practical Approach" (R. Giegé and A. Ducruix, eds.) p. 47. IRL Press/Oxford University Press, Oxford, 1992.
5. J. Jancarik and S.-H. Kim, J. Appl. Cryst. 24, 409 (1991).
6. J. A. Doudna, C. Grosshans, A. Gooding, and C. Kundrot, Proc. Nat. Acad. Sci. USA 90, 7829 (1993).
7. C. E. Kundrot, Methods Enzymol. 276 [9], 1997.
8. L. Song and J. E. Gouaux, Methods Enzymol. 276 [4], 1997.
9. C. W. Carter, Jr., and Y. Yin, Acta Cryst. D50, 572 (1994).
10. G. E. P. Box, W. G. Hunter, and J. S. Hunter, "Statistics for Experimenters." Wiley Interscience, New York, 1978.
11. C. W. Carter, Jr., K. V. Crumley, D. C. Coleman, F. Hage, and G. Bricogne, Acta Cryst. A46, 57 (1990).
12. C. W. Carter, Jr., S. Doublié, and D. E. Coleman, J. Mol. Biol. 238, 346 (1994).
13. L. Kuyper and C. W. Carter, Jr., J. Cryst. Growth in press (1996).
14. W. B. Jakoby, Anal. Biochem. 26, 295 (1968).
15. M. Riès-Kautt and A. Ducruix, in "Crystallization of Nucleic Acids and Proteins: A Practical Approach" (A. Ducruix and R. Giegé, eds.), p. 195. IRL Press/Oxford University Press, Oxford, 1992.
16. G. Feher and Z. Kam, Methods Enzymol. 114, 77, 1985.
17. M. Ataka and S. Tanaka, Biopolymers 25, 337 (1986).
18. M. Ataka and A. Michihiko, J. Cryst. Growth 90, 86 (1988).
19. J. R. Luft, S. V. Arakali, M. J. Kirisits, J. Kalenir, I. Wawrzak, V. Cody, W. A. Pangborn, and G. DeTitta, J. Appl. Cryst. 27, 443 (1994).
20. G. Scarborough, Acta Cryst. D50, 643 (1994).
21. F. Thibault, J. Langowski, and R. Leberman, J. Cryst. Growth 122, 50 (1992).
22. J. Hofrichter, P. D. Ross, and W. A. Eaton, Proc. Nat. Acad. Sci. USA 71, 4864 (1974).
23. J. Hofrichter, P. D. Ross, and W. A. Eaton, Proc. Nat. Acad. Sci. USA 73, 3035 (1976).
24. R. Boistelle and J. P. Astier, J. Cryst. Growth 90, 14 (1988).
25. P. C. Weber, Adv. Prot. Chem. 41, 1 (1991).
26. 22,23 whereas the reservoir clearly has a distinguishable effect on crystallogenesis.
27. J. R. Luft and G. DeTitta, Methods Enzymol. 276 [7], 1997.
28. W. Nernst, Z. Physik. Chem. 4, 379 (1889).
29. T. Arakawa and S. N. Timasheff, Methods Enzymol. 114, 49, 1985.
30. C. Carbonnaux, M. Ries-Kautt, and A. Ducruix, Protein Science 4, 2123-2128 (1995).
31. R. H. Hardin and N. J. A. Sloane, J. Statistical Planning and Inference 37, 339 (1993).
32. G. Bricogne, Methods Enzymol. 276 [23], 1997.
33. N. J. A. Sloane, personal communication (1994).
34. C. W. Carter, Jr., and G. P. Li, unpublished observations (1996).
35. G. A. Milliken and D. E. Johnson, "Analysis of Messy Data: Volume 1, Designed Experiments." Chapman and Hall, New York, 1992.
36. G. A. Milliken and D. E. Johnson, "Analysis of Messy Data: Volume 2, Nonreplicated Experiments." Chapman and Hall, New York, 1989.
37. L. Wilkinson, "SYSTAT, The System for Statistics." (SYSTAT, Inc., Evanston, IL 60601) (1987).
38. I. SAS Institute, "SAS/STAT User's Guide, Volume II," p. 6. Cary, NC, 1989.
39. The conservative procedure, described in Ref. 10, would be first to fit a hyperplane to the data, then to test for evidence for nonplanarity by identifying significant out-of-plane experiments, and to introduce higher order terms only as required by the data. This procedure becomes complicated for multidimensional models, and the stepwise algorithm generally accomplishes the same purpose.
40. D. Noever, M. L. Pusey, E. L. Forsythe, and S. Baskaran, J. Cryst. Growth in press (1996).
41. L. Betts, S. Xiang, S. A. Short, R. Wolfenden, and C. W. Carter, Jr., J. Mol. Biol. 235, 635 (1994).
42. Y. Yin and C. W. J. Carter, Nucleic Acids Res. 24, 1279-1286 (1996).
43. E. P. Mitchell and E. F. Garman, J. Appl. Cryst. 27, 1070 (1994).
44. D. W. Rogers, Methods Enzymol. 276 [13], 1997.