Expression of α-expansin genes during root acclimations to O 2 deficiency in Rumex palustris

Plant Molecular Biology

Volumn 56, Issue 3, 2004, Pages 423-437

  Colmer, T D ^b   Peeters, A J M ^a   Wagemaker, C A M ^a,c   Vriezen, W H ^a,c   Ammerlaan, A ^a   Voesenek, L A C J ^a  

^a UTRECHT UNIVERSITY   (Netherlands)

^b UNIVERSITY OF WESTERN AUSTRALIA   (Australia)

^c RADBOUD UNIVERSITY NIJMEGEN   (Netherlands)

Author keywords

Adventitious roots; Aerenchyma; Expansins; mRNA in situ hybridization; Real time RT PCR; Waterlogging

Indexed keywords

GENES; GENETIC ENGINEERING; OXYGEN; RNA; TISSUE;

ELONGATION ZONES; ROOT ACCLIMATIONS; RUMEX PALUSTRIS; TAP ROOT;

PLANTS (BOTANY);

COMPLEMENTARY DNA; EXPANSIN PROTEIN, PLANT; MESSENGER RNA; OXYGEN; VEGETABLE PROTEIN;

ACCLIMATIZATION; ARTICLE; CHEMISTRY; DNA SEQUENCE; DRUG EFFECT; GENE EXPRESSION REGULATION; GENETICS; GROWTH, DEVELOPMENT AND AGING; IN SITU HYBRIDIZATION; ISOLATION AND PURIFICATION; METABOLISM; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; PHYLOGENY; PLANT; PLANT ROOT; RUMEX;

ACCLIMATIZATION; DNA, COMPLEMENTARY; GENE EXPRESSION REGULATION, DEVELOPMENTAL; GENE EXPRESSION REGULATION, PLANT; IN SITU HYBRIDIZATION; MOLECULAR SEQUENCE DATA; OXYGEN; PHYLOGENY; PLANT COMPONENTS; PLANT PROTEINS; PLANT ROOTS; RNA, MESSENGER; RUMEX; SEQUENCE ANALYSIS, DNA;

GENES; GENETIC ENGINEERING; NUCLEIC ACIDS; PLANT TISSUES; PLANTS; ROOTS;

EUKARYOTA; RUMEX; RUMEX PALUSTRIS;

EID: 12444330441     PISSN: 01674412     EISSN: None     Source Type: Journal    
DOI: 10.1007/s11103-004-3844-5     Document Type: Article

References (53)

1. Armstrong, W. 1979. Aeration in higher plants. Adv. Bot. Res. 7: 225-332.
2. Catala, C., Rose, J.K.C. and Bennett, A.B. 2000. Auxin-regulated genes encoding cell wall-modifying proteins are expressed during early tomato fruit growth. Plant Physiol. 122; 527-534.
3. Cho, H.-T. and Cosgrove, D.J. 2002. Regulation of root hair initiation and expansin gene expression in arabidopsis. Plant Cell 14: 3237-3253.
4. Cho, H.-T. and Kende, H. 1998. Tissue localization of expansins in deepwater rice. Plant J. 15: 805-812.
5. Chomczynski, P. and Sacchi, N. 1987. Single-step method of RNA isolation by acid guanidinium thiocyanate-phenolchloroform extraction. Anal. Biochem. 162: 156-159.
6. Colmer, T.D. 2003. Long-distance transport of gases in plants: a perspective on internal aeration and radial oxygen loss from roots. Plant Cell Environ. 26: 17-36.
7. Cosgrove, D.J. 2000a. Expansive growth of plant cell walls. Plant Physiol. Biochem. 38: 109-124.
8. Cosgrove, D.J. 2000b. Loosening of plant cell walls by expansins. Nature 407: 321-326.
9. Cox, M.C.H., Millenaar, F.F., de Jong van Berkel, Y.E.M., Peeters, A.J.M. and Voesenek, L.A.C.J. 2003. Plant movement; submergence-induced petiole elongation in Rumex palustris depends on hyponastic growth. Plant Physiol 132: 282-291.
10. Drews, G.N. 1998. In situ hybridization. In: J.M. Martinez-Zapater and J. Salinas (Eds.), Methods in Molecular Biology Humana Press, Totowa, NJ, USA. 82: pp.353-371.
11. Fleming, A.J., McQueen-Mason, S.J., Mandel, T. and Kuhlemeier, C. 1997. Induction of leaf primordia by the cell wall protein expansin. Science 276: 1415-1418.
12. Feinburg, A.P. and Vogelstein, B. 1984. A technique for radiolabeling DNA restriction endonuclease fragments to high specific activity [Addendum], Anal. Biochem. 137: 266-267.
13. Hutchison, K.W., Singer, P.B., McInnis, S., Diaz-Sala, C. and Greenwood, M.S. 1999. Expansins are conserved in conifers and expressed in hypocotyls in response to exogenous auxin. Plant Physiol. 120: 827-831.
14. Jackson, M.B. and Drew, M.C. 1984. Effects of flooding on growth and metabolism of herbaceous plants. In: T.T. Kozlowski, (Ed.), Flooding and Plant Growth, Academic Press, New York, pp. 47-128.
15. Jackson, M.B. and Armstrong, W. 1999. Formation of aerenchyma and the processes of plant ventilation in relation to soil flooding and submergence. Plant Biol. 1: 274-287.
16. Justin, S.H.F.W. and Armstrong W. 1987. The anatomical characteristics of roots and plant response to soil flooding. New Phytol. 106: 465-95.
17. Karnovsky, M.J. 1965. A formaldehyde-glutaraldehyde fixative of high osmolarity for use in electron microscopy. J. Cell. Biol. 27: 137A-138A.
18. Kende, H., van der Knaap, E. and Cho, H.-T. 1998. Deepwater rice: a model plant to study stem elongation. Plant Physiol. 118: 1105-1110.
19. Kende, H., Bradford, K.J., Brummell, D.A., Cho, H.-T., Cosgrove, D.J., Fleming, A.J., Gehring, C., Lee, Y., McQueen-Mason, S.J., Rose, J.K.C. and Voesenek L.A.C.J. 2004. Nomenclature for members of the expansin superfamily of genes and proteins. Plant Mol. Biol. 55: 311-314.
20. Kiefer, E., Heller, W. and Ernst, D. 2000. A simple and efficient protocol for isolation of functional RNA from plant tissues rich in secondary metabolites. Plant Mol. Biol. Rep. 18: 33-39.
21. Laan, P., Berrevoets, M.J., Lythe, S., Armstrong, W. and Blom, C.W.P.M. 1989. Root morphology and aerenchyma formation as indicators of the flood-tolerance of Rumex species. J. Ecol. 77: 693-703.
22. Lee, D.-K., Ahn, J.H., Song, S.-K., Choi, Y.D. and Lee, J.S. 2003. Expression of an expansin gene is correlated with root elongation in soybean. Plant Physiol. 131: 985-997.
23. Lee, Y. and Kende, H. 2001. Expression of beta-expansins is correlated with internodal elongation in deepwater rice. Plant Physiol. 127: 645-654.
24. Lee, Y., Choi, D. and Kende, H. 2001. Expansins: ever-increasing numbers and functions. Curr. Opin. Plant Biol. 4: 527-532.
25. Lee, Y. and Kende, H. 2002. Expression of alpha-expansins and expansin-like genes in deepwater rice. Plant Physiol. 130: 1396-1404.
26. Li, Y., Darley, C.P., Ongaro, V., Fleming, A., Schipper, O., Baldauf, S.L. and McQueen-Mason, S.J. 2002. Plant expansins are a complex multigene family with an ancient evoluionary origin. Plant Physiol. 128: 854-864.
27. Link, B.M. and Cosgrove, D.J. 1998. Acid-growth response and α-expansin in suspension cultures of bright yellow 2 tobacco. Plant Physiol. 118: 907-916.
28. Livak, K.J., Flood, S.J.A., Marmaro, J., Giusti, W. and Deetz, K. 1995. Oligonucleotides with fluorescent dyes at opposite ends provide a quenched probe system useful for detecting PCR product and nucleic acid hybridization. PCR Meth. Applic 4: 357-362.
29. T method. Methods 25: 402-408.
30. McQueen-Mason, S.J. and Cosgrove, D.J. 1995. Expansin mode of action on cell walls. Analysis of wall hydrolysis, stress relaxation, and binding. Plant Physiol. 107: 87-100.
31. McQueen-Mason, S.J., Durachko, D.M. and Cosgrove, D.J. 1992. Two endogenous proteins that induce cell wall extension in plants. Plant Cell 4: 1425-1433.
32. Nielsen, H., Engelbrecht, J., Brunak, S. and von Heijne, G. 1997. Identification of prokaryotic and eukaryotic signal peptides and prediction of their cleavage sites. Prot. Engin 10: 1-6.
33. Peeters, A.J.M., Cox, M.C.H., Benschop, J.J., Vreeburg, R.A.M., Bou, J. and Voesenek L.A.C.J. 2002. Submergence research using Rumex palustris as a model; looking back and going forward. J. Exp. Bot. 53: 391-398.
34. Pien, S., Wyrzykowska, J., McQueen-Mason, S.J., Smart, C. and Fleming, A. 2001. Local expression of expansin induces the entire process of leaf development and modifies leaf shape. Proc Natl Acad Sci USA 98: 11812-11817.
35. Ponnamperuma, F.N. 1984. Effects of flooding on soils. In: T.T. Kozlowski (Ed.) Flooding and Plant Growth. Academic Press, New York, pp. 9-45.
36. Raskin, I. 1983. A method for measuring leaf volume, density, thickness, and internal gas volume. Hort. Sci. 18: 698-699.
37. Rose, J.K.C., Cosgrove, D.J., Albersheim, P., Darvill, A.G. and Bennett, A.B. 2000. Detection of expansin proteins and activity during tomato fruit ontogeny. Plant Physiol. 123: 1583-1592.
38. Sambrook, J., Fritsch, E.F. and Maniatis, T. 1989. Molecular Cloning - a laboratory manual, 2nd ed Cold Spring Harbor, NY, USA.
39. Sanger, F., Nicklen, S. and Coulson, A.R. 1977. DNA sequencing with chain terminating inhibitors. Proc. Natl. Acad. Sci. USA 74: 5463-5467.
40. Thomson, C.J., Armstrong, W., Waters, I. and Greenway, H. 1990. Aerenchyma formation and associated oxygen movement in seminal and nodal roots of wheat. Plant Cell Environ. 13: 395-403.
41. Vartapetian, B.B. and Jackson, M.B. 1997. Plant adaptations to anaerobic stress. Ann. Bot. 79: 3-20.
42. Visser, E.J.W., Blom, C.W.P.M. and Voesenek, L.A.C.J. 1996a. Flooding-induced adventitious root formation in Rumex: morphology and development in an ecological perspective. Acta Bot. Neerl. 45: 17-28.
43. Visser, E.J.W., Cohen, J.D., Barendse, G.W.M., Blom, C.W.P.M. and Voesenek, L.A.C.J. 1996b. An ethylene-mediated increase in sensitivity to auxin induces adventitious root formation in flooded Rumex palustris Sm. Plant Physiol. 112: 1687-1692.
44. Visser, E.J.W., Colmer, T.D., Blom, C.W.P.M. and Voesenek, L.A.C.J. 2000. Changes in growth, porosity, and radial oxygen loss from adventitious roots of selected mono- and dicotyledonous wetland species with contrasting types of aerenchyma. Plant Cell Environ. 23: 1237-1245.
45. Voesenek, L.A.C.J., Benschop, J.J., Bou, J., Cox, M.C.H., Groeneveld, H.W., Millenaar, F.F., Vreeburg, R.A.M. and Peeters, A.J.M. 2003. Interactions between plant hormones regulate submergence-induced shoot elongation in the flooding-tolerant dicot Rumex palustris. Ann. Bot. 91: 205-211.
46. Voesenek, L.A.C.J., Perik, P.J.M., Blom, C.W.P.M. and Sassen, M.M.A. 1990. Petiole elongation in Rumex during submergence and ethylene exposure: the relative contributions of cell division and cell expansion. J Plant Growth Reg. 9: 13-17.
47. Voesenek, L.A.C.J., Rijnders, J.H.G.M., Peeters, A.J.M., van der Steeg, H.M. and de Kroon, H. 2004. Plant hormones regulate fast shoot elongation under water; from genes to communities. Ecology 85: 16-27.
48. Vreeburg, R.A.M. 2004. Expansins in submergence-induced petiole elongation of Rumex palustris: kinetics and regulation. Ph.D. Dissertation, Utrecht University, Utrecht, The Netherlands.
49. Vriezen, W.H., De Graaf, B., Mariani, C. and Voesenek, L.A.C.J. 2000. Submergence induces Expansin gene expression in flooding-tolerant Rumex palustris and not in flooding-intolerant R. acetosa. Planta 210: 956-963.
50. Wiengweera, A., Greenway, H. and Thomson, C.J. 1997. The use of agar nutrient solution to simulate lack of convection in waterlogged soils. Ann. Bot. 80: 115-123.
51. Wu, Y., Meeley, R.B. and Cosgrove, D.J. 2001a. Analysis and expression of the alpha-expansin and beta-expansin gene families in maize. Plant Physiol. 126: 222-232.
52. Wu, Y., Thorne, E.T., Sharp, R.E. and Cosgrove, D.J. 2001b. Modification of expansin transcript levels in the maize primary root at low water potentials. Plant Physiol 126: 1471-1479.
53. Zhang, N. and Hasenstein, K.H. 2000. Distribution of expansins in graviresponding maize roots. Plant Cell Physiol. 41: 1305-1312.