메뉴 건너뛰기




Volumn 1, Issue 1, 1995, Pages 55-63

Crosslinking of an iodo-uridine-RNA hairpin to a single site on the human U1A N-terminal RNA binding domain

Author keywords

5 iodo uridine RNA; Protein mutagenesis; Site specific crosslinking; U1A RBD

Indexed keywords


EID: 12444276102     PISSN: 13558382     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article
Times cited : (50)

References (36)
  • 2
    • 0026086816 scopus 로고
    • Recognition of U1 and U2 small nuclear RNAs can be altered by a 5-amino-acid segment in the U2 small nuclear ribonucleoprotein particle (snRNP) B″ protein and through interactions with U2 snRNP-A′ protein
    • Bentley R, Keene JD. 1991. Recognition of U1 and U2 small nuclear RNAs can be altered by a 5-amino-acid segment in the U2 small nuclear ribonucleoprotein particle (snRNP) B″ protein and through interactions with U2 snRNP-A′ protein. Mol Cell Biol 11:1829-1839.
    • (1991) Mol Cell Biol , vol.11 , pp. 1829-1839
    • Bentley, R.1    Keene, J.D.2
  • 3
    • 0027753933 scopus 로고
    • Analysis of the RNA-recognition motif and RS and RGG domains: Conservation in metazoan pre-mRNA splicing factors
    • Birney E, Kumar S, Krainer AR. 1993. Analysis of the RNA-recognition motif and RS and RGG domains: Conservation in metazoan pre-mRNA splicing factors. Nucleic Acids Res 21:5803-5816.
    • (1993) Nucleic Acids Res , vol.21 , pp. 5803-5816
    • Birney, E.1    Kumar, S.2    Krainer, A.R.3
  • 7
    • 0023979999 scopus 로고
    • Heterogeneous nuclear ribonucleoprotein particles and the pathway of mRNA formation
    • Dreyfuss G, Swanson MS, Pinol-Roma S. 1988. Heterogeneous nuclear ribonucleoprotein particles and the pathway of mRNA formation. Trends Biochem Sci 13:86-91.
    • (1988) Trends Biochem Sci , vol.13 , pp. 86-91
    • Dreyfuss, G.1    Swanson, M.S.2    Pinol-Roma, S.3
  • 8
    • 0028176929 scopus 로고
    • Determination of the secondary structure and folding topology of an RNA binding domain of mammalian hnRNP Al protein using three-dimensional heteronuclear magnetic resonance spectroscopy
    • Garrett DS, Lodi PJ, Shamoo Y, Williams K, Clore GM, Gronenborn A. 1994. Determination of the secondary structure and folding topology of an RNA binding domain of mammalian hnRNP Al protein using three-dimensional heteronuclear magnetic resonance spectroscopy. Biochemistry 33:2852-2858.
    • (1994) Biochemistry , vol.33 , pp. 2852-2858
    • Garrett, D.S.1    Lodi, P.J.2    Shamoo, Y.3    Williams, K.4    Clore, G.M.5    Gronenborn, A.6
  • 9
    • 0024791283 scopus 로고
    • Secondary structure prediction for RNA binding domain in RNP proteins identifies βαβ as the main structural motif
    • Ghetti A, Padovani C, Di Cesare G, Morandi C. 1989. Secondary structure prediction for RNA binding domain in RNP proteins identifies βαβ as the main structural motif. FEBS Lett 257:373-376.
    • (1989) FEBS Lett , vol.257 , pp. 373-376
    • Ghetti, A.1    Padovani, C.2    Di Cesare, G.3    Morandi, C.4
  • 10
    • 0027992089 scopus 로고
    • The determinants of RNA-binding specificity of the heterogeneous nuclear ribonucleoprotein C proteins
    • Gorlach M, Burd CG, Dreyfuss G. 1994. The determinants of RNA-binding specificity of the heterogeneous nuclear ribonucleoprotein C proteins. J Biol Chem 269:23074-23078.
    • (1994) J Biol Chem , vol.269 , pp. 23074-23078
    • Gorlach, M.1    Burd, C.G.2    Dreyfuss, G.3
  • 11
    • 0026757694 scopus 로고
    • Interaction of the RNA-binding domain of the hnRNP C proteins with RNA
    • Gorlach M, Wittekind M, Beckman RA, Mueller L, Dreyfuss G. 1992. Interaction of the RNA-binding domain of the hnRNP C proteins with RNA. EMBO J 11:3289-3295.
    • (1992) EMBO J , vol.11 , pp. 3289-3295
    • Gorlach, M.1    Wittekind, M.2    Beckman, R.A.3    Mueller, L.4    Dreyfuss, G.5
  • 12
    • 0025912789 scopus 로고
    • A specific, UV-induced RNA-protein crosslink using 5-bromouridine-substituted RNA
    • Gott JM, Willis MC, Koch TH, Uhlenbeck OC. 1991. A specific, UV-induced RNA-protein crosslink using 5-bromouridine-substituted RNA. Biochemistry 30:6290-6295.
    • (1991) Biochemistry , vol.30 , pp. 6290-6295
    • Gott, J.M.1    Willis, M.C.2    Koch, T.H.3    Uhlenbeck, O.C.4
  • 13
    • 0027956671 scopus 로고
    • Interactions of RNA hairpins with the human U1A N-terminal RNA binding domain
    • Hall KB. 1994. Interactions of RNA hairpins with the human U1A N-terminal RNA binding domain. Biochemistry 33:10076-10088.
    • (1994) Biochemistry , vol.33 , pp. 10076-10088
    • Hall, K.B.1
  • 14
    • 0026713783 scopus 로고
    • Interaction of N-terminal domain of U1A protein with an RNA stem/loop
    • Hall KB, Stump WT. 1992. Interaction of N-terminal domain of U1A protein with an RNA stem/loop. Nucleic Acids Res 20:4283-4290.
    • (1992) Nucleic Acids Res , vol.20 , pp. 4283-4290
    • Hall, K.B.1    Stump, W.T.2
  • 15
    • 0025964204 scopus 로고
    • RNA-binding domain of the A protein component of the U1 small nuclear ribonucleoprotein analyzed by NMR spectroscopy is structurally similar to ribosomal proteins
    • Hoffman DW, Query CC, Golden BL, White SW, Keene JD. 1991. RNA-binding domain of the A protein component of the U1 small nuclear ribonucleoprotein analyzed by NMR spectroscopy is structurally similar to ribosomal proteins. Proc Natl Acad Sci USA 88:2495-2499.
    • (1991) Proc Natl Acad Sci USA , vol.88 , pp. 2495-2499
    • Hoffman, D.W.1    Query, C.C.2    Golden, B.L.3    White, S.W.4    Keene, J.D.5
  • 16
    • 0028094401 scopus 로고
    • NMR studies of U1 snRNA recognition by the N-terminal RNP domain of the human U1A protein
    • Howe PWA, Nagai K, Neuhaus D, Varani G. 1994. NMR studies of U1 snRNA recognition by the N-terminal RNP domain of the human U1A protein. EMBO J 13:3873-3881.
    • (1994) EMBO J , vol.13 , pp. 3873-3881
    • Howe, P.W.A.1    Nagai, K.2    Neuhaus, D.3    Varani, G.4
  • 17
    • 0025938601 scopus 로고
    • Identification of molecular contacts between the U1A small nuclear ribonucleoprotein and U1 RNA
    • Jessen TH, Oubridge C, Teo CH, Pritchard C, Nagai K. 1991. Identification of molecular contacts between the U1A small nuclear ribonucleoprotein and U1 RNA. EMBO J 10:3447-3456.
    • (1991) EMBO J , vol.10 , pp. 3447-3456
    • Jessen, T.H.1    Oubridge, C.2    Teo, C.H.3    Pritchard, C.4    Nagai, K.5
  • 19
    • 0025761656 scopus 로고
    • RNA recognition: Towards identifying determinants of specificity
    • Kenan DJ, Query CC, Keene JD. 1991. RNA recognition: Towards identifying determinants of specificity. Trends Biochem Sci 16:214-220.
    • (1991) Trends Biochem Sci , vol.16 , pp. 214-220
    • Kenan, D.J.1    Query, C.C.2    Keene, J.D.3
  • 20
    • 0028027496 scopus 로고
    • Resonance assignments and solution structure of the second RNA-binding domain of sex-lethal determined by multidimensional heteronuclear magnetic resonance
    • Lee AL, Kanaar R, Rio DC, Wemmer DE. 1994. Resonance assignments and solution structure of the second RNA-binding domain of sex-lethal determined by multidimensional heteronuclear magnetic resonance. Biochemistry 33:13775-13786.
    • (1994) Biochemistry , vol.33 , pp. 13775-13786
    • Lee, A.L.1    Kanaar, R.2    Rio, D.C.3    Wemmer, D.E.4
  • 21
    • 0025127420 scopus 로고
    • Quantitative determination that one of two potential RNA-binding domains of the A protein component of the U1 small nuclear ribonucleoprotein complex binds with high affinity to stem-loop II of U1 RNA
    • Lutz-Freyermuth C, Query CC, Keene JD. 1990. Quantitative determination that one of two potential RNA-binding domains of the A protein component of the U1 small nuclear ribonucleoprotein complex binds with high affinity to stem-loop II of U1 RNA. Proc Natl Acad Sci USA 87:6393-6397.
    • (1990) Proc Natl Acad Sci USA , vol.87 , pp. 6393-6397
    • Lutz-Freyermuth, C.1    Query, C.C.2    Keene, J.D.3
  • 22
    • 0024565671 scopus 로고
    • A binding consensus: RNA-protein interactions in splicing, snRNPs, and sex
    • Mattaj IW. 1989. A binding consensus: RNA-protein interactions in splicing, snRNPs, and sex. Cell 57:1-3.
    • (1989) Cell , vol.57 , pp. 1-3
    • Mattaj, I.W.1
  • 23
    • 0023857046 scopus 로고
    • Phenylalanines that are conserved among several RNA-binding proteins form part of a nucleic acid-binding pocket in the A1 heterogeneous nuclear ribonucleoprotein
    • Merrill BM, Stone KL, Cobianchi F, Wilson SH, Williams KR. 1988. Phenylalanines that are conserved among several RNA-binding proteins form part of a nucleic acid-binding pocket in the A1 heterogeneous nuclear ribonucleoprotein. J Biol Chem 263:3307-3313.
    • (1988) J Biol Chem , vol.263 , pp. 3307-3313
    • Merrill, B.M.1    Stone, K.L.2    Cobianchi, F.3    Wilson, S.H.4    Williams, K.R.5
  • 24
    • 0023651444 scopus 로고
    • Oligoribonucleotide synthesis using T7 RNA polymerase and synthetic DNA templates
    • Milligan JF, Groebe DR, Witherall GW, Uhlenbeck OC. 1987. Oligoribonucleotide synthesis using T7 RNA polymerase and synthetic DNA templates. Nucleic Acids Res 15:8783-8798.
    • (1987) Nucleic Acids Res , vol.15 , pp. 8783-8798
    • Milligan, J.F.1    Groebe, D.R.2    Witherall, G.W.3    Uhlenbeck, O.C.4
  • 25
    • 0025221731 scopus 로고
    • Crystal structure of the RNA-binding domain of the U1 small nuclear ribonucleoprotein A
    • Nagai K, Oubridge C, Jessen TH, Li J, Evans PR. 1990. Crystal structure of the RNA-binding domain of the U1 small nuclear ribonucleoprotein A. Nature 348:515-520.
    • (1990) Nature , vol.348 , pp. 515-520
    • Nagai, K.1    Oubridge, C.2    Jessen, T.H.3    Li, J.4    Evans, P.R.5
  • 26
    • 0028004607 scopus 로고
    • Crystal structure at 1.92 Å resolution of the RNA-binding domain of the U1A spliceosomal protein complexed with an RNA hairpin
    • Oubridge C, Ito N, Evans PR, Teo CH, Nagai K. 1994. Crystal structure at 1.92 Å resolution of the RNA-binding domain of the U1A spliceosomal protein complexed with an RNA hairpin. Nature 372:432-438.
    • (1994) Nature , vol.372 , pp. 432-438
    • Oubridge, C.1    Ito, N.2    Evans, P.R.3    Teo, C.H.4    Nagai, K.5
  • 27
    • 0024603237 scopus 로고
    • A common RNA recognition motif identified within a defined U1 RNA-binding domain of the 70K U1 snRNP protein
    • Query CC, Bentley R, Keene J. 1989. A common RNA recognition motif identified within a defined U1 RNA-binding domain of the 70K U1 snRNP protein. Cell 57:89-101.
    • (1989) Cell , vol.57 , pp. 89-101
    • Query, C.C.1    Bentley, R.2    Keene, J.3
  • 28
    • 0025375223 scopus 로고
    • Major determinants of the specificity and interaction between small nuclear ribonucleoproteins U1A and U2B″ and their cognate RNAs
    • Scherly D, Boelens W, Dathan NA, van Venrooij WJ, Mattaj IW. 1990. Major determinants of the specificity and interaction between small nuclear ribonucleoproteins U1A and U2B″ and their cognate RNAs. Nature 345:502-506.
    • (1990) Nature , vol.345 , pp. 502-506
    • Scherly, D.1    Boelens, W.2    Dathan, N.A.3    Van Venrooij, W.J.4    Mattaj, I.W.5
  • 29
    • 0024851833 scopus 로고
    • Identification of the RNA binding segment of human U1 A protein and definition of its binding site on U1 snRNA
    • Scherly D, Boelens W, van Venrooij WJ, Dathan NA, Hamm J, Mattaj IW. 1989. Identification of the RNA binding segment of human U1 A protein and definition of its binding site on U1 snRNA. EMBO J 8:4163-4170.
    • (1989) EMBO J , vol.8 , pp. 4163-4170
    • Scherly, D.1    Boelens, W.2    Van Venrooij, W.J.3    Dathan, N.A.4    Hamm, J.5    Mattaj, I.W.6
  • 30
    • 0025876048 scopus 로고
    • Conserved amino acids within and outside of the N-terminal RNP motif of the U1A snRNP protein involved in U1 RNA binding
    • Scherly D, Kambach C, Boelens W, van Venrooij WJ, Mattaj IW. 1991. Conserved amino acids within and outside of the N-terminal RNP motif of the U1A snRNP protein involved in U1 RNA binding. J Mol Biol 219:577-584.
    • (1991) J Mol Biol , vol.219 , pp. 577-584
    • Scherly, D.1    Kambach, C.2    Boelens, W.3    Van Venrooij, W.J.4    Mattaj, I.W.5
  • 31
    • 0027379754 scopus 로고
    • SP6 RNA polymerase efficiently synthesizes RNA from short double-stranded DNA templates
    • Stump WT, Hall KB. 1993. SP6 RNA polymerase efficiently synthesizes RNA from short double-stranded DNA templates. Nucleic Acids Res 21:5480-5484.
    • (1993) Nucleic Acids Res , vol.21 , pp. 5480-5484
    • Stump, W.T.1    Hall, K.B.2
  • 33
    • 0028012281 scopus 로고
    • A molecular dynamics approach for the generation of complete protein structures from limited coordinate data
    • van Gelder CWG, Leusen FJJ, Leunissen JAM, Noordik JH. 1994. A molecular dynamics approach for the generation of complete protein structures from limited coordinate data. Proteins Struct Funct Genet 18:174-185.
    • (1994) Proteins Struct Funct Genet , vol.18 , pp. 174-185
    • Van Gelder, C.W.G.1    Leusen, F.J.J.2    Leunissen, J.A.M.3    Noordik, J.H.4
  • 34
    • 0027717964 scopus 로고
    • Photo-crosslinking of 5-iodouracil-substituted RNA and DNA to proteins
    • Willis MC, Hicke BJ, Uhlenbeck OC, Cech TR, Koch TH. 1993. Photo-crosslinking of 5-iodouracil-substituted RNA and DNA to proteins. Science 262:1255-1257.
    • (1993) Science , vol.262 , pp. 1255-1257
    • Willis, M.C.1    Hicke, B.J.2    Uhlenbeck, O.C.3    Cech, T.R.4    Koch, T.H.5
  • 36
    • 0027172789 scopus 로고
    • A double-filter method for nitrocellulose-filter binding: Application to protein-nucleic acid interactions
    • Wong I, Lohman TL. 1993. A double-filter method for nitrocellulose-filter binding: Application to protein-nucleic acid interactions. Proc Nail Acad Sci USA 90:5428-5432.
    • (1993) Proc Nail Acad Sci USA , vol.90 , pp. 5428-5432
    • Wong, I.1    Lohman, T.L.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.