Application of correlated residual dipolar couplings to the determination of the molecular alignment tensor magnitude of oriented proteins and nucleic acids

Journal of Biomolecular NMR

Volumn 28, Issue 3, 2004, Pages 273-287

  Bryce, David L ^a   Bax, Ad ^a  

^a NATIONAL INSTITUTE OF DIABETES AND DIGESTIVE AND KIDNEY DISEASES   (United States)

Author keywords

Alignment tensor; Dipolar coupling; Histogram; Liquid crystal; Molecular alignment; Powder pattern; Residual dipolar coupling; RNA

Indexed keywords

CARBON; HYDROGEN; NITROGEN; RNA; UBIQUITIN;

ACCURACY; ARTICLE; CALCULATION; CARBON NUCLEAR MAGNETIC RESONANCE; CHEMICAL STRUCTURE; CONTROLLED STUDY; CORRELATION ANALYSIS; GEOMETRY; HISTOGRAM; MACROMOLECULE; MOLECULAR DYNAMICS; NITROGEN NUCLEAR MAGNETIC RESONANCE; NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTON NUCLEAR MAGNETIC RESONANCE; REGRESSION ANALYSIS; RNA ANALYSIS;

NUCLEAR MAGNETIC RESONANCE, BIOMOLECULAR; NUCLEIC ACIDS; PROTEIN CONFORMATION; PROTEINS; RNA; UBIQUITIN;

EID: 1242317861     PISSN: 09252738     EISSN: None     Source Type: Journal    
DOI: 10.1023/B:JNMR.0000013701.16162.0c     Document Type: Article

References (61)

1. Alderman, D.W., Solum, M.S. and Grant, D.M. (1986) J. Chem. Phys., 84, 3717-3725.
2. Al-Hashimi, H.M., Pitt, S.W., Majumdar, A., Xu, W.J. and Patel, D.J. (2003) J. Mol. Biol, 329, 867-873.
3. Andrew, E.R. and Wynn, V.T. (1966) Proc. Roy. Soc. London Ser. A, 291, 257-266.
4. Bak, M., Rasmussen, J.T. and Nielsen, N.C. (2000) J. Magn. Reson., 147, 296-330.
5. Bax, A. (2003) Prot. Sci., 12, 1-16.
6. Bax, A. and Tjandra, N. (1997) J. Biomol. NMR, 10, 289-292.
7. Bothner-By, A.A. (1996) In Encyclopedia of Nuclear Magnetic Resonance (Grant, D.M., and Harris, R.K. (Eds.), Wiley, Chichester, pp. 2932-2938.
8. Brunner, E. (2001) Concepts Magn. Res. 13, 238-259.
9. Bryce, D.L. and Wasylishen, R.E. (2003) J. Biomol. NMR, 25, 73-78.
10. Case, D.A. (1999) J. Biomol. NMR, 15, 95-102.
11. Chou, J.J., Gaemers, S., Howder, B., Louis, J.M. and Bax, A. (2001) J. Biomol. NMR, 21, 377-382.
12. Choy, W.Y., Tollinger, M., Mueller, G.A. and Kay, L.E. (2001) J. Biomol. NMR, 21, 31-40.
13. Clore, G.M. (2000) Proc. Natl. Acad. Sci. USA 97, 9021-9025.
14. Clore, G.M., Gronenborn, A.M. and Bax, A. (1998a) J. Magn. Reson., 133, 216-221.
15. Clore, G.M., Gronenborn, A.M. and Tjandra, N. (1998b) J. Magn. Reson., 131, 159-162.
16. Clore, G.M., Starich, M.R. and Gronenborn, A.M. (1998c) J. Am. Chem. Soc., 120, 10571-10572.
17. Cornilescu, G. and Bax, A. (2000) J. Am. Chem. Soc., 122, 10143-10154.
18. Cornilescu, G., Marquardt, J.L., Ottiger, M. and Bax, A. (1998) J. Am. Chem. Soc., 120, 6836-6837.
19. de Alba, E. and Tjandra, N. (2002) Prog. Nucl. Magn. Reson. Spectrosc., 40, 175-197.
20. Delaglio, F., Grzesiek, S., Vuister, G.W., Zhu, G., Pfeifer, J. and Bax, A. (1995) J. Biomol. NMR, 6, 277-293.
21. Derrick, J.P. and Wigley, D.B. (1994) J. Mol. Biol., 243, 906-918.
22. Eichele, K. and Wasylishen, R.E. (2001) University of Tubingen (http://casgm3.anorg.chemie.uni-tuebingen.de/klaus/ soft/index.html).
23. Fushman, D., Ghose, R. and Cowburn, D. (2000) J. Am. Chem. Soc., 122, 10640-10649.
24. Gayathri, C., Bothnerby, A.A., Vanzijl, P.C.M. and Maclean, C. (1982) Chem. Phys. Lett., 87, 192-196.
25. Grant, D.M. (1996) In Encyclopedia of Nuclear Magnetic Resonance (Grant, D.M. and Harris, R.K. (Eds.), Wiley, Chichester, pp. 1298-1321.
26. Griffin, R.G., Ellett, J.D., Mehring, M., Bullitt, J.G. and Waugh, J.S. (1972) J. Chem. Phys., 57, 2147-2155.
27. Hansen, M.R., Mueller, L. and Pardi, A. (1998) Nat. Struct. Biol., 5, 1065-1074.
28. Hu, J.S. and Bax, A. (1997) J. Am. Chem. Soc., 119, 6360-6368.
29. Klosterman, P.S., Shah, S.A. and Steitz, T.A. (1999) Biochemistry, 38, 14784-14792.
30. Kuhn, P., Knapp, M., Soltis, S.M., Ganshaw, G., Thoene, M. and Bott, R. (1998) Biochemistry, 37, 13446-13452.
31. Kung, H.C., Wang, K.Y., Goljer, I. and Bolton, P.H. (1995) J. Magn. Reson. Ser. B, 109, 323-325.
32. Lee, L.K., Rance, M., Chazin, W.I. and Palmer, A.G. (1997) J. Biomol. NMR, 9, 287-298.
33. Lipsitz, R.S. and Tjandra, N. (2001) J. Am. Chem. Soc., 123, 11065-11066.
34. Losonczi, J.A., Andrec, M., Fischer, M.W.F. and Prestegard, J.H. (1999) J. Magn. Reson., 138, 334-342.
35. Lukin, J.A., Kontaxis, G., Simplaceanu, V., Yuan, Y., Bax, A. and Ho, C. (2003) Proc. Natl. Acad. Sci. USA 100, 517-520.
36. MacArthur, M.W. and Thornton, J.M. (1996) J. Mol. Biol., 264, 1180-1195.
37. Maricq, M.M. and Waugh, J.S. (1979) J. Chem. Phys., 70, 3300-3316.
38. Mehring, M. (1983) High resolution NMR in Solids, 2nd edn., Springer Verlag, Berlin.
39. Meiler, J., Blomberg, N., Nilges, M. and Griesinger, C. (2000) J. Biomol. NMR, 16, 245-252.
40. Meiler, J., Peti, W. and Griesinger, C. (2003) J. Am. Chem. Soc., 125, 8072-8073.
41. Mueller, G.A., Choy, W.Y., Yang, D.W., Forman-Kay, J.D., Venters, R.A. and Kay, L.E. (2000) J. Mol. Biol., 300, 197-212.
42. Olejniczak, E.T., Vega, S. and Griffin, R.G. (1984) J. Chem. Phys., 81, 4804-4817.
43. Ottiger, M. and Bax, A. (1998) J. Am. Chem. Soc., 120, 12334-12341.
44. Prestegard, J.H., Al-Hashimi, H.M. and Tolman, J.R. (2000) Q. Rev. Biophys., 33, 371-424.
45. Ruckert, M. and Otting, G. (2000) J. Am. Chem. Soc., 122, 7793-7797.
46. Sass, J., Cordier, F., Hoffmann, A., Rogowski, M., Cousin, A., Omichinski, J.G., Lowen, H. and Grzesiek, S. (1999) J. Am. Chem. Soc., 121, 2047-2055.
47. Sass, H.J., Musco, G., Stahl, S.J., Wingfield, P.T. and Grzesiek, S. (2000) J. Biomol. NMR, 18, 303-309.
48. Sass, H.J., Musco, G., Stahl, S.J., Wingfield, P.T. and Grzesiek, S. (2001) J. Biomol. NMR, 21, 275-280.
49. Skrynnikov, N.R. and Kay, L.E. (2000) J. Biomol. NMR, 18, 239-252.
50. Skrynnikov, N.R., Goto, N.K., Yang, D.W., Choy, W.Y., Tolman, J.R., Mueller, G.A. and Kay, L.E. (2000) J. Mol. Biol., 295, 1265-1273.
51. Tjandra, N. and Bax, A. (1997) Science, 278, 1111-1114.
52. Tjandra, N., Omichinski, J.G., Gronenborn, A.M., Clore, G.M. and Bax, A. (1997) Nat. Struct. Biol., 4, 732-738.
53. Tolman, J.R., Flanagan, J.M., Kennedy, M.A. and Prestegard, J.H. (1995) Proc. Natl. Acad. Sci. USA, 92, 9279-9283.
54. Tugarinov, V. and Kay, L.E. (2003) J. Mol. Biol., 327, 1121-1133.
55. Tycko, R., Blanco, F.J. and Ishii, Y. (2000) J. Am. Chem. Soc., 122, 9340-9341.
56. Ulmer, T.S., Ramirez, B.E., Delaglio, F. and Bax, A. (2003) J. Am. Chem. Soc., 125, 9179-9191.
57. Vijay-Kumar, S., Bugg, C.E. and Cook, W.J. (1987) J. Mol. Biol., 194, 531-544.
58. Warren, J.J. and Moore, P.B. (2001) J. Magn. Reson., 149, 271-275.
59. Wu, Z.R., Tjandra, N. and Bax, A. (2001) J. Am. Chem. Soc., 123, 3617-3618.
60. Zidek, L., Padrta, P., Chmelik, J. and Sklenar, V. (2003) J. Magn. Reson., 162, 385-395.
61. Zweckstetter, M. and Bax, A. (2002) J. Biomol. NMR, 23, 127-137.