A two-dimensional IR spectroscopic (2D-IR) simulation of protein conformational changes

Spectroscopy

Volumn 18, Issue 1, 2004, Pages 49-58

  Arrondo, José Luis R ^a   Iloro, Ibon ^a   Aguirre, Julián ^b   Goñi, Félix M ^a  

^a CSIC UPV Unidad de Biofisica UBF   (Spain)

^b UNIVERSITY OF THE BASQUE COUNTRY UPV EHU   (Spain)

Author keywords

[No Author keywords available]

Indexed keywords

BANDWIDTH; COMPUTER SIMULATION; CONFORMATIONS; INFRARED SPECTROSCOPY; SPURIOUS SIGNAL NOISE;

ARTIFICIAL BANDS; ASYNCHRONOUS SPECTRA;

PROTEINS;

AMIDE; POLYPEPTIDE;

ARTICLE; CORRELATION ANALYSIS; INFRARED SPECTROSCOPY; MATHEMATICAL ANALYSIS; MATHEMATICAL COMPUTING; NORMAL DISTRIBUTION; PROTEIN CONFORMATION; SIMULATION; TEMPERATURE;

EID: 1242306729     PISSN: 07124813     EISSN: None     Source Type: Journal    
DOI: 10.1155/2004/406126     Document Type: Article

References (14)

1. J.L.R. Arrondo and F.M. Goñi, Infrared spectroscopic studies of membrane lipids, in: Biomolecular Structure and Dynamics, G. Vergoten and T. Theophanldes, eds, Kluwer Academic, Dordrecht/Boston/London, 1997, pp. 229-242.
2. J.L.R. Arrondo and F.M. Goñi, Structure and dynamics of membrane proteins as studied by infrared spectroscopy, Prog. Biophys. Mol. Biol. 72 (1999), 367-405.
3. J.L.R. Arrondo, A. Muga, J. Castresana and F.M. Goñi, Quantitative studies of the structure of proteins in solution by Fourier-transform infrared spectroscopy, Prog. Biophys. Mol. Biol. 59 (1993), 23-56.
4. M. Bouchard, J. Zurdo, E.J. Nettleton, C.M. Dobson and C.V. Robinson, Formation of insulin amyloid fibrils followed by FTIR simultaneously with CD and electron microscopy, Protein Sci. 9 (2000), 1960-1967.
5. L.M. Contreras, F.J. Aranda, F. Gavilanes, J.M. Gonzalez-Ros and J. Villalain, Structure and interaction with membrane model systems of a peptide derived from the major epitope region of HIV protein gp41: implications on viral fusion mechanism, Biochemistry 40 (2001), 3196-3207.
6. M.A. Czarnecki, Two-dimensional correlation spectroscopy: effect of band position, width and intensity changes on correlation intensities, Appl. Spectrosc. 54 (2000), 986-993.
7. H. Fabian, H.H. Mantsch and C.P. Schultz, Two-dimensional IR correlation spectroscopy: sequential events in the unfolding process of the lambda Cro-V55C repressor protein, Proc. Natl. Acad. Sci. USA 96 (1999), 13153-13158.
8. H. Kim and S.J. Jeon, Simulations of two-dimensional electronic correlation spectra, Bull. Korean Chem. Soc. 22 (2001), 807-815.
9. S. Morita, Y. Ozaki and I. Noda, Global phase angle description of generalized two-dimensional correlation spectroscopy: 1. Theory and its simulation for practical use, Appl. Spectrosc. 55 (2001), 1618-1621.
10. I. Noda, A.E. Dowrey, C. Marcott, G.M. Story and Y. Ozaki, Generalized two-dimensional correlation spectroscopy, Appl. Spectrosc. 54 (2000), 236A-248A.
11. M.J. Paquet, M. Laviolette, M. Pezolet and M. Auger, Two-dimensional infrared correlation spectroscopy study of the aggregation of cytochrome c in the presence of dimyristoylphosphatidylglycerol, Biophys. J. 81 (2001), 305-312.
12. S. Sasic, A. Muszynski and Y. Ozaki, New insight into the mathematical background of generalized two-dimensional correlation spectroscopy and the influence of mean normalization pretreatment on two-dimensional correlation spectra, Appl. Spectrosc. 55 (2001), 343-349.
13. H. Susi, Infrared spectroscopy-conformation, Methods Enzymol. 26 (1972), 455-472.
14. G.B.B.M. Sutherland, Infrared analysis of the structure of amino acids, Polypeptides and Proteins (1952), 291-318.