Mutations in a Conserved Motif Inhibit Single-stranded DNA Binding and Recombination Mediator Activities of Bacteriophage T4 UvsY Protein

Journal of Biological Chemistry

Volumn 279, Issue 7, 2004, Pages 6077-6086

  Bleuit, Jill S ^a   Ma, Yujie ^a   Munro, James ^a   Morrical, Scott W ^a  

^a UNIVERSITY OF VERMONT COLLEGE OF MEDICINE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ASSOCIATION REACTIONS; BACTERIOPHAGES; CATALYSIS; DNA; HYDROLYSIS; MUTAGENESIS; PROTEINS;

BINDING SITES; MUTATIONS;

BIOCHEMISTRY;

DNA BINDING PROTEIN; PROTEIN UVSX; PROTEIN UVSY; SINGLE STRANDED DNA; UNCLASSIFIED DRUG;

ARTICLE; BACTERIOPHAGE; BINDING AFFINITY; BINDING SITE; CONFORMATIONAL TRANSITION; DNA BINDING; DNA RECOMBINATION; DNA STRAND; HOMOLOGOUS RECOMBINATION; HUMAN; HYDROLYSIS; MISSENSE MUTATION; MUTATION; NONHUMAN; NUCLEOTIDE SEQUENCE; PRESYNAPTIC NERVE; PRIORITY JOURNAL; PROTEIN ASSEMBLY; PROTEIN DNA INTERACTION; PROTEIN PROTEIN INTERACTION;

ADENOSINE TRIPHOSPHATASES; AMINO ACID MOTIFS; BACTERIOPHAGE T4; BINDING SITES; CATALYSIS; DNA; DNA, SINGLE-STRANDED; DNA-BINDING PROTEINS; DOSE-RESPONSE RELATIONSHIP, DRUG; HYDROLYSIS; MEMBRANE PROTEINS; MODELS, BIOLOGICAL; MUTATION; MUTATION, MISSENSE; PLASMIDS; PROTEIN STRUCTURE, TERTIARY; RECOMBINATION, GENETIC; SODIUM CHLORIDE; ULTRACENTRIFUGATION; VIRAL PROTEINS;

UNIDENTIFIED BACTERIOPHAGE;

EID: 1242272002     PISSN: 00219258     EISSN: None     Source Type: Journal    
DOI: 10.1074/jbc.M311557200     Document Type: Article

References (49)

1. Kreuzer, K. N., and Morrical, S. W. (1994) in Molecular Biology of Bacteriophage T4 (Karam, J. D., ed) pp. 28-42, American Society for Microbiology, Washington, D. C.
2. Cunningham, R. P., and Berger, H. (1977) Virology 80, 67-82
3. Melamede, R. J., and Wallace, S. S. (1977) J. Virol. 24, 28-40
4. Melamede, R. J., and Wallace, S. S. (1978) FEBS Lett. 87, 12-16
5. Melamede, R. J., and Wallace, S. S. (1980) Mol. Gen. Genet. 177, 501-509
6. Hinton, D. M., and Nossal, N. G. (1986) J. Biol. Chem. 261, 5663-5673
7. Formosa, T., and Alberts, B. M. (1986) J. Biol. Chem. 261, 6107-6118
8. Bleuit, J. S., Xu, H., Ma, Y., Wang, T., Liu, J., and Morrical, S. W. (2001) Proc. Natl. Acad. Sci. U. S. A. 98, 8298-8305
9. Yonesaki, T. and Minagawa, T. (1989) J. Biol. Chem. 264, 7814-7820
10. Kodadek, T., Gan, D-C., and Stemke-Hale, K. (1989) J. Biol. Chem. 264, 16451-16457
11. Harris, L. D., and Griffith, J. D. (1989) J. Mol. Biol. 206, 19-27
12. Morrical, S. W., and Alberts, B. M. (1990) J. Biol. Chem. 265, 15096-15103
13. Yassa, D. S., and Morrical, S. W. (1997) Biochimie (Paris) 79, 275-285
14. Beernink, H. T., and Morrical, S. W. (1998) Biochemistry 37, 5673-5681
15. Sweezy, M. A., and Morrical, S. W. (1997) J. Mol. Biol. 266, 927-938
16. Sweezy, M. A., and Morrical, S. W. (1999) Biochemistry 38, 936-944
17. Beernink, H. T., and Morrical, S. W. (1999) Trends Biochem. Sci. 24, 385-389
18. Morrical, S. W., Wong, M. L., and Alberts, B. M. (1991) J. Biol. Chem. 266, 14031-14038
19. Formosa, T., and Alberts, B. M. (1984) Cold Spring Harbor Symp. Quant. Biol. 49, 363-370
20. Hurley, J. M., Chervitz, S. A., Jarvis, T. C., Singer, B. S., and Gold, L. (1993) J. Mol. Biol. 229, 398-418
21. Jiang, H., Giedroc, D., and Kodadek, T. (1993) J. Biol. Chem. 268, 7904-7911
22. Weber, C. A., Kirchner, J. M., Salazar, E. P., and Takayama, K. (1994) Mutat. Res. 324, 147-152
23. Strausberg, R. L., Feingold, E. A., Grouse, L. H., Derge, J. G., Klausner, R. D., Collins, F. S., Wagner, L., Shenmen, C. M., Schuler, G. D., Altschul, S. F., Zeeberg, B., Buetow, K. H., Schaefer, C. F., Bhat, N. K., Hopkins, R. F., Jordan, H., Moore, T., Max, S. I., Wang, J., Hsieh, F., Diatchenko, L., Marusina, K., Farmer, A. A., Rubin, G. M., Hong, L., Stapleton, M., Soares, M. B., Bonaldo, M. F., Casavant, T. L., Scheetz, T. E., Brownstein, M. J., Usdin, T. B., Toshiyuki, S., Carninci, P., Prange, C., Raha, S. S., Loquellano, N. A., Peters, G. J., Abramson, R. D., Mullahy, S. J., Bosak, S. A., McEwan, P. J., McKernan, K. J., Malek, J. A., Gunaratne, P. H., Richards, S., Worley, K. C., Hale, S., Garcia, A. M., Gay, L. J., Hulyk, S. W., Villalon, D. K., Muzny, D. M., Sodergren, E. J., Lu, X., Gibbs, R. A., Fahey, J., Helton, E., Ketteman, M., Madan, A., Rodrigues, S., Sanchez, A., Whiting, M., Madan, A., Young, A. C., Shevchenko, Y., Bouffard, G. G., Blakesley, R. W., Touchman, J. W., Green, E. D., Dickson, M. C., Rodriguez, A. C., Grimwood, J., Schmutz, J., Myers, R. M., Butterfield, Y. S., Krzywinski, M. I., Skalska, U., Smailus, D. E., Schnerch, A., Schein, J. E., Jones, S. J., Marra, M. A., and Mammalian Gene Collection Program Team (2002) Proc. Natl. Acad. Sci. U. S. A. 99, 16899-16903
24. Ando, R. A., and Morrical, S. W. (1999) Biochemistry 38, 16589-16598
25. Weber, C. A., Salazar, E. P., Stewart, S. A., and Thompson, L. H. (1990) EMBO J. 9, 1437-1447
26. Sambrook, J., Fritsch, E. F., and Maniatis, T. (1989) Molecular Cloning: A Laboratory Manual, 2nd Ed., Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY
27. Lefebvre, S. D., and Morrical, S. W. (1997) J. Mol. Biol. 272, 312-326
28. Menetski, J. P., and Kowalczykowski, S. C. (1985) J. Mol. Biol. 181, 281-295
29. Yonesaki, T., and Minagawa, T. (1985) EMBO J. 4, 3321-3327
30. Gill, S. C., and Von Hippel, P. H. (1989) Anal. Biochem. 182, 319-326
31. Ho, S. N., Hunt, H. D., Horton, R. M., Pullen, J. K., and Pease, L. R. (1989) Gene (Amst.) 77, 51-59
32. Alberts, B. M., and Herrick, G. (1971) Methods Enzymol. 21, 198-217
33. van Holde, K. E., and Weischet, W. O. (1978) Biopolymers 17, 1387
34. Formosa, T., Burke, R. L., and Alberts, B. M. (1983) Proc. Natl. Acad. Sci. U. S. A. 80, 2442-2446
35. Birdsall, B., King, R. W., Wheeler, M. R., Lewis, C. A., Goode, S. R., Dunlap, R. B., and Roberts, G. C. (1983) Anal. Biochem. 132, 353-361
36. Kowalczykowski, S. C., Paul, L. S., Lonberg, N., McSwiggen, J. A., and von Hippel, P. H. (1986) Biochemistry 25, 1226-1240
37. Morrical, S. W., Hempstead, K., and Morrical, M. D. (1994) J. Biol. Chem. 269, 33069-33081
38. Harris, L. D., and Griffith, J. D. (1988) Biochemistry 27, 6954-6959
39. Jiang, H., Salinas, F., and Kodadek, T. (1997) Biochem. Biophys. Res. Commun. 231, 600-605
40. Ando, R. A., and Morrical, S. W. (1998) J. Mol. Biol. 283, 785-796
41. Kowalczykowski, S. C., Lonberg, N., Newport, J. W., and von Hippel, P. H. (1981) J. Mol. Biol. 145, 75-104
42. Newport, J. W., Lonberg, N., Kowalczykowski, S. C., and von Hippel, P. H. (1981) J. Mol. Biol. 145, 105-121
43. Kodadek, T., Wong, M. L., and Alberts, B. M. (1988) J. Biol. Chem. 263, 9427-9436
44. Rivera, E., Vila, L., and Barbe, J. (1996) J. Bacteriol. 178, 5550-5554
45. Walter, R. B., Harless, J., Svensson, R. T., Kallman, K. D., Morizot, D. C., and Nairn, R. S. (1991) Genomics 10, 1083-1086
46. Sung, P., Bailly, V., Weber, C., Thompson, L. H., Prakash, L., and Prakash, S. (1993) Nature 365, 852-855
47. Frederick, G. D., Amirkhan, R. H., Schultz, R. A., and Friedberg, E. C. (1994) Hum. Mol. Genet. 3, 1783-1788
48. Lamerdin, J. E., Stilwagen, S. A., Ramirez, M. H., Stubbs, L., and Carrano, A. V. (1996) Genomics 34, 399-409
49. Adams, M. D., Celniker, S. E., Holt, R. A., Evans, C. A., Gocayne, J. D., Amanatides, P. G., Scherer, S. E., Li, P. W., Hoskins, R. A., Galle, R. F., George, R. A., Lewis, S. E., Richards, S., Ashburner, M., Henderson, S. N., Sutton, G. G., Wortman, J. R., Yandell, M. D., Zhang, Q., Chen, L. X., Brandon, R. C., Rogers, Y. H., Blazej, R. G., Champe, M., Pfeiffer, B. D., Wan, K. H., Doyle, C., Baxter, E. G., Helt, G., Nelson, C. R., Gabor, G. L., Abril, J. F., Agbayani, A., An, H. J., Andrews-Pfannkoch, C., Baldwin, D., Ballew, R. M., Basu, A., Baxendale, J., Bayraktaroglu, L., Beasley, E. M., Beeson, K. Y., Benos, P. V., Berman, B. P., Bhandari, D., Bolshakov, S., Borkova, D., Botchan, M. R., Bouck, J., Brokstein, P., Brottier, P., Burtis, K. C., Busam, D. A., Butler, H., Cadieu, E., Center, A., Chandra, I., Cherry, J. M., Cawley, S., Dahlke, C., Davenport, L. B., Davies, P., de Pablos, B., Delcher, A., Deng, Z., Mays, A. D., Dew, I., Dietz, S. M., Dodson, K., Doup, L. E., Downes, M., Dugan-Rocha, S., Dunkov, B. C., Dunn, P., Durbin, K. J., Evangelista, C. C., Ferraz, C., Ferriera, S., Fleischmann, W., Fosler, C., Gabrielian, A. E., Garg, N. S., Gelbart, W. M., Glasser, K., Glodek, A., Gong, F., Gorrell, J. H., Gu, Z., Guan, P., Harris, M., Harris, N. L., Harvey, D., Heiman, T. J., Hernandez, J. R., Houck, J., Hostin, D., Houston, K. A., Howland, T. J., Wei, M. H., Ibegwam, C., Jalali, M., Kalush, F., Karpen, G. H., Ke, Z., Kennison, J. A., Ketchum, K. A., Kimmel, B. E., Kodira, C. D., Kraft, C., Kravitz, S., Kulp, D., Lai, Z., Lasko, P., Lei, Y., Levitsky, A. A., Li, J., Li, Z., Liang, Y., Lin, X., Liu, X., Mattei, B., McIntosh, T. C., McLeod, M. P., McPherson, D., Merkulov, G., Milshina, N. V., Mobarry, C., Morris, J., Moshrefi, A., Mount, S. M., Moy, M., Murphy, B., Murphy, L., Muzny, D. M., Nelson, D. L., Nelson, D. R., Nelson, K. A., Nixon, K., Nusskern, D. R., Pacleb, J. M., Palazzolo, M., Pittman, G. S., Pan, S., Pollard, J., Puri, V., Reese, M. G., Reinert, K., Remington, K., Saunders, R. D., Scheeler, F., Shen, H., Shue, B. C., Siden-Kiamos, I., Simpson, M., Skupski, M. P., Smith, T., Spier, E., Spradling, A. C., Stapleton, M., Strong, R., Sun, E., Svirskas, R., Tector, C., Turner, R., Venter, E., Wang, A. H., Wang, X., Wang, Z. Y., Wassarman, D. A., Weinstock, G. M., Weissenbach, J., Williams, S. M., Woodage, T., Worley, K. C., Wu, D., Yang, S., Yao, Q. A., Ye, J., Yeh, R. F., Zaveri, J. S., Zhan, M., Zhang, G., Zhao, Q., Zheng, L., Zheng, X. H., Zhong, F. N., Zhong, W., Zhou, X., Zhu, S., Zhu, X., Smith, H. O., Gibbs, R. A., Myers, E. W., Rubin, G. M., and Venter, J. C. (2000) Science 287, 2185-2195