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Volumn 49, Issue 5, 2003, Pages 379-385

Change in the bacterial community of natural river biofilm during biodegradation of aniline-derived compounds determined by denaturing gradient gel electrophoresis

Author keywords

Bacterial community structure; Biodegradation; Biofilm; Denaturing gradient gel electrophoresis; Freshwater environment; River die away test

Indexed keywords

ANILINE DERIVATIVE; DNA 16S; DNA FRAGMENT; GLASS; POLYCARBONATE; RIVER WATER;

EID: 12344289354     PISSN: 13449702     EISSN: None     Source Type: Journal    
DOI: 10.1248/jhs.49.379     Document Type: Article
Times cited : (19)

References (29)
  • 4
    • 0028025969 scopus 로고
    • Stream bacterial ecology: Aneglected field?
    • Left, L. (1994) Stream bacterial ecology: Aneglected field? ASM News, 60, 135-138.
    • (1994) ASM News , vol.60 , pp. 135-138
    • Left, L.1
  • 5
    • 0000589069 scopus 로고
    • A shake-flask test for estimation of biodegradability of toxic organic substances in the aquatic environment
    • Cripe, C. R., Walker, W. W., Pritchard, P. H. and Bourquin, A. W. (1987) A shake-flask test for estimation of biodegradability of toxic organic substances in the aquatic environment. Ecotoxicol. Environ. Saf., 14, 239-251.
    • (1987) Ecotoxicol. Environ. Saf. , vol.14 , pp. 239-251
    • Cripe, C.R.1    Walker, W.W.2    Pritchard, P.H.3    Bourquin, A.W.4
  • 6
    • 0028990872 scopus 로고
    • Modelling the kinetics of biodegradation of anionic surfactants by biofilm bacteria from polluted riverine sites: A comparison of five classes of surfactant at three sites
    • Lee, C., Russel, N. J. and White, G. F. (1995) Modelling the kinetics of biodegradation of anionic surfactants by biofilm bacteria from polluted riverine sites: a comparison of five classes of surfactant at three sites. Water Res., 29, 2491-7249.
    • (1995) Water Res. , vol.29 , pp. 2491-7249
    • Lee, C.1    Russel, N.J.2    White, G.F.3
  • 7
    • 0030808535 scopus 로고    scopus 로고
    • Biodegradation of chemical compounds in a newly developed modified river die-away test
    • Yamaguchi, N., Ohmori, H., Welikala, N. and Nasu, M. (1997) Biodegradation of chemical compounds in a newly developed modified river die-away test. Jpn. J. Toxicol. Environ. Health, 43, 209-214.
    • (1997) Jpn. J. Toxicol. Environ. Health , vol.43 , pp. 209-214
    • Yamaguchi, N.1    Ohmori, H.2    Welikala, N.3    Nasu, M.4
  • 8
    • 24744437728 scopus 로고
    • Environment Directorate
    • (OECD Environmental Directorate, Ed.), OECD Publications, Paris
    • Organization for Economic Cooperation and Development (OECD). (1981) Environment Directorate. In OECD Guidelines for Testing of Chemicals (OECD Environmental Directorate, Ed.), OECD Publications, Paris, p. 301C.
    • (1981) OECD Guidelines for Testing of Chemicals
  • 9
    • 24744437728 scopus 로고
    • Environment Directorate
    • (OECD Environmental Directorate, Ed.), OECD Publications, Paris
    • Frganization for Economic Cooperation and Development (OECD). (1981) Environment Directorate. In OECD Guidelines for Testing of Chemicals (OECD Environmental Directorate, Ed.), OECD Publications, Paris, p. 301E.
    • (1981) OECD Guidelines for Testing of Chemicals
  • 10
    • 0028821186 scopus 로고
    • Bioaccumulation of the herbicide Diclofop in extracellular polymers and its utilization by a biofilm community during starvation
    • Wolfaardt, G. M., Lawrence, J. R., Robarts, R. D. and Caldwell, D. E. (1995) Bioaccumulation of the herbicide Diclofop in extracellular polymers and its utilization by a biofilm community during starvation. Appl. Environ. Microbiol., 61, 152-158.
    • (1995) Appl. Environ. Microbiol. , vol.61 , pp. 152-158
    • Wolfaardt, G.M.1    Lawrence, J.R.2    Robarts, R.D.3    Caldwell, D.E.4
  • 11
    • 0031902077 scopus 로고    scopus 로고
    • Monitoring impact of a pesticide treatment on bacterial soil communities by metabolic and genetic fingerprinting in addition to conventional testing procedures
    • Engelen, B., Meinken, K., von Wintzingerode, F., Heuer, H., Malkomes, H. P. and Backhaus, H. (1998) Monitoring impact of a pesticide treatment on bacterial soil communities by metabolic and genetic fingerprinting in addition to conventional testing procedures. Appl. Environ. Microbiol., 64, 2814-2821.
    • (1998) Appl. Environ. Microbiol. , vol.64 , pp. 2814-2821
    • Engelen, B.1    Meinken, K.2    Von Wintzingerode, F.3    Heuer, H.4    Malkomes, H.P.5    Backhaus, H.6
  • 12
    • 0033986163 scopus 로고    scopus 로고
    • Establishment of a polychlorinated biphenyl-dechlorinating microbial consortium, specific for doubly flanked chlorines, in a defined, sediment-free medium
    • Wu, Q., Sowers, K. R. and May, H. D. (2000) Establishment of a polychlorinated biphenyl-dechlorinating microbial consortium, specific for doubly flanked chlorines, in a defined, sediment-free medium. Appl. Environ. Microbiol., 66, 49-53.
    • (2000) Appl. Environ. Microbiol. , vol.66 , pp. 49-53
    • Wu, Q.1    Sowers, K.R.2    May, H.D.3
  • 13
    • 0035286749 scopus 로고    scopus 로고
    • Community structure and activity dynamics of nitrifying bacteria in a phosphate-removing biofilm
    • Gieseke, A., Purkhold, U., Wagner, M., Amann, R. and Schramm, A. (2001) Community structure and activity dynamics of nitrifying bacteria in a phosphate-removing biofilm. Appl. Environ. Microbiol., 67, 1351-1362.
    • (2001) Appl. Environ. Microbiol. , vol.67 , pp. 1351-1362
    • Gieseke, A.1    Purkhold, U.2    Wagner, M.3    Amann, R.4    Schramm, A.5
  • 14
    • 0027460328 scopus 로고
    • Profiling of complex microbial populations by denaturant gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA
    • Muyzer, G., de Waal, E. C. and Uitterlinden, A. G. (1993) Profiling of complex microbial populations by denaturant gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA. Appl. Environ. Microbiol., 59, 695-700.
    • (1993) Appl. Environ. Microbiol. , vol.59 , pp. 695-700
    • Muyzer, G.1    De Waal, E.C.2    Uitterlinden, A.G.3
  • 15
    • 0032938864 scopus 로고    scopus 로고
    • Thermal gradient gel electrophoresis analysis of bioprotection from pollutants shocks in the activated sludge microbial community
    • Eichner, C. A., Erb, R. W., Timmis, K. N. and Döbler, I. W. (1999) Thermal gradient gel electrophoresis analysis of bioprotection from pollutants shocks in the activated sludge microbial community. Appl. Environ. Microbiol., 65, 102-109.
    • (1999) Appl. Environ. Microbiol. , vol.65 , pp. 102-109
    • Eichner, C.A.1    Erb, R.W.2    Timmis, K.N.3    Döbler, I.W.4
  • 16
    • 0032907003 scopus 로고    scopus 로고
    • Genetic changes in the bacterial community structure associated protistan grazers
    • Van Hannen, E. J., Veninga, M., Bloem, J., Gons, H. J. and Laanbroek, H. J. (1999) Genetic changes in the bacterial community structure associated protistan grazers. Arch Hydrobiol., 145, 25-38.
    • (1999) Arch Hydrobiol. , vol.145 , pp. 25-38
    • Van Hannen, E.J.1    Veninga, M.2    Bloem, J.3    Gons, H.J.4    Laanbroek, H.J.5
  • 17
    • 0034056895 scopus 로고    scopus 로고
    • Monitoring impact of in situ biostimulation treatment on groundwater bacterial community by DGGE
    • Iwamoto, T., Tani, K., Nakamura, K., Suzuki, Y., Kitagawa, M., Eguchi, M. and Nasu, M. (2000) Monitoring impact of in situ biostimulation treatment on groundwater bacterial community by DGGE. FEMS Microbiol. Ecol., 32, 129-141.
    • (2000) FEMS Microbiol. Ecol. , vol.32 , pp. 129-141
    • Iwamoto, T.1    Tani, K.2    Nakamura, K.3    Suzuki, Y.4    Kitagawa, M.5    Eguchi, M.6    Nasu, M.7
  • 19
    • 0034884725 scopus 로고    scopus 로고
    • Bacterial community composition and activity in urban rivers in Thailand and Malaysia
    • Kenzaka, T., Yamaguchi, N., Prapagdee, B., Mikami, E. and Nasu, M. (2001) Bacterial community composition and activity in urban rivers in Thailand and Malaysia. J. Health Sci., 47, 353-361.
    • (2001) J. Health Sci. , vol.47 , pp. 353-361
    • Kenzaka, T.1    Yamaguchi, N.2    Prapagdee, B.3    Mikami, E.4    Nasu, M.5
  • 20
    • 0017654644 scopus 로고
    • Use of nuclepore filters for counting bacteria by fluorescence microscopy
    • Hobbie, J. E., Daley, R. J. and Jasper, S. (1977) Use of nuclepore filters for counting bacteria by fluorescence microscopy. Appl. Environ. Microbiol., 33, 1225-1228.
    • (1977) Appl. Environ. Microbiol. , vol.33 , pp. 1225-1228
    • Hobbie, J.E.1    Daley, R.J.2    Jasper, S.3
  • 21
    • 0025903592 scopus 로고
    • Rapid method for direct extraction of DNA from soil and sediments
    • Tsai, Y. L. and Olson, B. H. (1991) Rapid method for direct extraction of DNA from soil and sediments. Appl. Environ. Microbiol., 57, 1070-1074.
    • (1991) Appl. Environ. Microbiol. , vol.57 , pp. 1070-1074
    • Tsai, Y.L.1    Olson, B.H.2
  • 22
    • 0022422655 scopus 로고
    • Nearly all single base substitutions in DNA fragments joined to a GC-clamp can be detected by denaturing gradient gel electrophoresis
    • Myers, R. M., Fischer, S. G., Lerman, L. S. and Maniatis, T. (1985) Nearly all single base substitutions in DNA fragments joined to a GC-clamp can be detected by denaturing gradient gel electrophoresis. Nucleic Acids Res., 13, 3131-3145.
    • (1985) Nucleic Acids Res. , vol.13 , pp. 3131-3145
    • Myers, R.M.1    Fischer, S.G.2    Lerman, L.S.3    Maniatis, T.4
  • 24
    • 0032795933 scopus 로고    scopus 로고
    • Bacteria designed for bioremediation
    • Kenneth, N. T. and Diemar, H. P. (1999) Bacteria designed for bioremediation. Trends Biotechnol., 17, 200-204.
    • (1999) Trends Biotechnol. , vol.17 , pp. 200-204
    • Kenneth, N.T.1    Diemar, H.P.2
  • 25
    • 0026557457 scopus 로고
    • Effects of chlorobenzoate transportation on the Pseudomonas testosteroni biphenyl and chlorobiphenyl degradation pathway
    • Sondossi, M., Sylvestre, M. and Ahmad, D. (1992) Effects of chlorobenzoate transportation on the Pseudomonas testosteroni biphenyl and chlorobiphenyl degradation pathway. Appl. Environ. Microbiol., 58, 485-495.
    • (1992) Appl. Environ. Microbiol. , vol.58 , pp. 485-495
    • Sondossi, M.1    Sylvestre, M.2    Ahmad, D.3
  • 26
    • 0029875603 scopus 로고    scopus 로고
    • Influence of chlorobenzoates on the utilisation of chlorobiphenyls and chlorobenzoate mixtures by chlorobiphenyl/chlorobenzoate-mineralising hybrid bacterial strains
    • Stratford, J., Wright, M. A., Reineke, W., Mokross, H., Havel, J., Knowles, C. J. and Robinson, G. K. (1996) Influence of chlorobenzoates on the utilisation of chlorobiphenyls and chlorobenzoate mixtures by chlorobiphenyl/chlorobenzoate-mineralising hybrid bacterial strains. Arch. Microbiol., 165, 213-218.
    • (1996) Arch. Microbiol. , vol.165 , pp. 213-218
    • Stratford, J.1    Wright, M.A.2    Reineke, W.3    Mokross, H.4    Havel, J.5    Knowles, C.J.6    Robinson, G.K.7
  • 28
    • 0036154250 scopus 로고    scopus 로고
    • 16S ribosomal DNA-based analysis of bacterial diversity in purified water used in pharmaceutical manufacturing processes by PCR and denaturing gradient gel electrophoresis
    • Kawai, M., Matsutera, E., Kanda, H., Yamaguchi, N., Tani, K. and Nasu, M. (2002) 16S ribosomal DNA-based analysis of bacterial diversity in purified water used in pharmaceutical manufacturing processes by PCR and denaturing gradient gel electrophoresis. Appl. Environ. Microbiol., 68, 699-704.
    • (2002) Appl. Environ. Microbiol. , vol.68 , pp. 699-704
    • Kawai, M.1    Matsutera, E.2    Kanda, H.3    Yamaguchi, N.4    Tani, K.5    Nasu, M.6
  • 29
    • 0037311880 scopus 로고    scopus 로고
    • Bacterial activity and community composition in stream water and biofilm from an urban river determined by fluorescent in situ hybridization and DGGE analysis
    • Araya, R., Tani, K., Takagi, T., Yamaguchi, N. and Nasu, M. (2002) Bacterial activity and community composition in stream water and biofilm from an urban river determined by fluorescent in situ hybridization and DGGE analysis. FEMS Microbiol. Ecol., 43, 111-119.
    • (2002) FEMS Microbiol. Ecol. , vol.43 , pp. 111-119
    • Araya, R.1    Tani, K.2    Takagi, T.3    Yamaguchi, N.4    Nasu, M.5


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