Testing the MULTIFAN-CL assessment model using simulated tuna fisheries data

Fisheries Research

Volumn 71, Issue 3, 2005, Pages 311-334

  Labelle, Marc ^a,b  

^a SECRETARIAT OF THE PACIFIC COMMUNITY   (New Caledonia)

^b LGL LIMITED   (Canada)

Author keywords

Individual based models; MULTIFAN CL; Operational models; Precautionary reference points; Tuna stock status

Indexed keywords

DATA SET; FISHERY; INDIVIDUAL-BASED MODEL; SIMULATION; STOCK ASSESSMENT;

SCOMBRIDAE GEN. SP.; THUNNUS; THUNNUS ALBACARES;

EID: 12344253054     PISSN: 01657836     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.fishres.2004.08.035     Document Type: Article

References (54)

1. W.C. Allee, A.E. Emerson, O. Park, T. Park, and K.P. Schmidt Principles of Animal Ecology 1949 Saunders Philadelphia 837 pp.
2. Anonymous Risk evaluation and biological reference points for fishery management S.J. Smith J.J. Hunt D. Rivard Can. Spec. Publ. Fish. Aquat. Sci. No. 120 1993 441
3. Anonymous Status of yellowfin tuna in the eastern Pacific Ocean (EPO). Working Paper No. YFT-3 Proceedings of the 13th Standing Committee on Tuna and Billfish Secretariat of the Pacific Community, Noumea, New Caledonia 2000 63 pp.
4. Anonymous Executive summary Proceedings of the 15th Standing Committee on Tuna and Billfish Honolulu, HI, USA, July 22-27, 2002 2002
5. Beverton, R.J.H., Holt, S.J., 1957. On the dynamics of exploitated fish populations. Fisheries Investment Series No. 2, vol. 19. UK Ministry of Agriculture and Fisheries, London.
6. K.A. Bigelow, J. Hampton, and N. Miyabe Applications of a habitat-based model to estimate longline fishing effort and relative abundance of Pacific bigeye tuna (Thunnus obesus) Fish. Oceanogr. 11 3 2002 143 155
7. Boggs, C., Dalzell, P., Essington, T., Labelle, M., Mason, D., Skillman, R., Wetherall, J., 2000. Recommended overfishing definitions and control rules for the Western Pacific Regional Fishery Management Council pelagic fishery management plan. Honolulu Laboratory, Southwest Fisheries Sciences Center, NMFS-NOAA Admin. Report No. H-00-05, 18 pp.
8. R.W. Brill, B.A. Block, C.H. Boggs, K.A. Bigelow, E.V. Freund, and D.J. Marcinek Horizontal movements and depth distribution of large adult yellowfin tuna (Thunnus albacares) near the Hawaiian Islands, recorded using ultrasonic telemetry: implications for the physiological ecology of pelagic fishes Mar. Biol. 33 1999 395 408
9. D. Brown, and P. Rothery Models in Biology: Mathematics, Statistics and Computing 1993 Wiley New York 688 pp.
10. F. Chai, R.C. Dugdale, T.-H. Peng, F.P. Wilkerson, and R.T. Barber One-dimensional ecosystem model of the equatorial pacific upwelling system. Part I. Model development and silicon and nitrogen cycle Deep-Sea Res. II 2001
11. J.M. Chambers, W.S. Cleveland, B. Kleiner, and P.A. Tukey Graphical Methods for Data Analysis 1983 Duxbury Press Boston, USA
12. W.Y. Chen Assessment of southern oscillation sea level pressure indices Month. Weath. Rev. 110 1982 800 807
13. R. Conser A brief history of ADAPT Northw. Atl. Fish. Org. Sci. Council Stud. 17 1993 83 87
14. L. Dagorn, and P. Fréon Tropical tuna associated with floating objects: a simulation study of the meeting point hypothesis Can. J. Fish. Aquat. Sci. 56 1999 984 993
15. L. Dagorn, E. Josse, P. Bach, and A. Bertrand Modeling tuna behaviour near floating objects: from individuals to aggregations Aquat. Living Resour. 13 2000 203 211
16. R.C. Dugdale, R.T. Barber, F. Chai, T.H. Peng, and F.P. Wilkerson One-dimensional ecosystem model of the equatorial pacific upwelling system. Part II. Sensitivity analysis and comparison with JGOFS EqPac Data Deep-Sea Res. II 2001
17. FAO, 1993. Reference points for fishery management: their potential application for straddling and highly migratory resources. FAO Fisheries Circular No. 864, 52 pp.
18. D.A. Fournier AUTODIFF: A C++ Array Language Extension with Automatic Differentiation for Use in Nonlinear Modeling and Statistics 1992 Otter Research Ltd. Nanaimo, BC, Canada 56 pp.
19. D.A. Fournier An Introduction to AD Model Builder for Use in Nonlinear Modeling and Statistics 1996 Otter Research Ltd. Nanaimo, BC, Canada 56 pp.
20. D. Fournier, and C.P. Archibald A general theory for analyzing catch at age data Can. J. Fish. Aquat. Sci. 39 1982 1195 1207
21. D.A. Fournier, J.R. Sibert, and M. Terceiro Analysis of length frequency samples with relative abundance data for the Gulf of Maine northern shrimp (Pandalus borealis) by the MULTIFAN method Can. J. Fish. Aquat. Sci. 48 1991 591 598
22. D.A. Fournier, J. Hampton, and J.R. Sibert MULTIFAN-CL: a length-based, age-structured, model for fisheries stock assessment, with application to south Pacific albacore (Thunnus alalunga) Can. J. Fish. Aquat. Sci. 55 9 1998 2105 2116
23. D.A. Fournier, J.R. Sibert, J. Majkowski, and J. Hampton MULTIFAN: a likelihood-based method for estimating growth parameters and age composition from multiple length frequency data sets illustrated using data for southern bluefin tuna (Thunnus maccoyii) Can. J. Fish. Aquat. Sci. 47 1990 301 317
24. W.W. Fox Fitting a generalized stock production model by least-squares and equilibrium approximations U.S. Fish. Bull. 73 1975 23 37
25. Goodyear, C.P., 1989. LSIM - a length-based fish population simulation model. NOAA Technical Memorandum No. NMFS-SEFC 219. US Department of Commerce, 55 pp.
26. A. Griewank G.F. Corliss Automatic Differentiation of Algorithms: Theory, Implementation and Application 1991 Society for Industrial and Applied Mathematics Philadelphia, PA, USA
27. J.A. Gulland Fish Stock Assessment. A Manual of Basic Methods 1983 Wiley New York, USA 223 pp.
28. J. Hampton, and D.A. Fournier A spatially disaggregated, length-based, age-structured population model of yellowfin tuna (Thunnus albacares) in the western and central Pacific Mar. Freshwater Res. 52 2001 937 963
29. R. Hilborn, and C.J. Walters Quantitative Fisheries Stock Assessment 1992 Chapman & Hall New York 570 pp.
30. G. Huse, J. Giske, and A.G.V. Salvanes Individual-based models, pp. 228-248 P.J. Hart J.D. Reynolds Handbook of Fish Biology and Fisheries vol. 2 2002 Blackwell Publishing 410 pp.
31. International Council for the Exploration of the Sea (ICES), 1993. Report of the Working Group on Methods of Fish Stock Assessments. ICES Co-operative Research Report No. 191, Copenhagen.
32. International Council for the Exploration of the Sea (ICES), 1996. Report of the Comprehensive Fishery Evaluation Working Group. ICES CM1996/Assess:20. ICES Headquarters, Copenhagen, June 17-26, 1996.
33. Itano, D., 2001. The reproductive biology of yellowfin tuna (Thunnus albacares) in Hawaiian waters and the Western Tropical Pacific Ocean. Working Paper No. YFT-2. Report of the 14th Standing Committee on Tuna and Billfish, Noumea, New Caledonia, August 9-16, 2001, 12 pp.
34. Kaltongga, B., 1998. Regional tuna tagging project data summary. Oceanic Fisheries Program Technical Report No. 35. Secretariat of the Pacific Community, Noumea, New Caledonia, 70 pp.
35. P. Kleiber, and J. Hampton Modeling effects of FADs and islands on movement of skipjack tuna (Katsowonus pelamis): estimating parameters from tagging data Can. J. Fish. Aquat. Sci. 51 1994 2642 2653
36. P. Kleiber, J. Hampton, and D.A. Fournier MUTLIFAN-CL User's Guide 2003 Secretariat of the Pacific Community Noumea, New Caledonia 45 pp.
37. D. Kolody SCALIA: application of an integrated analysis stock-assessment model to the 2002 SCTB Methods Working Group simulated tuna fishery data. Working Paper No. MWG-5 Proceedings of the 15th Standing Committee on Tuna and Billfish July 22-27, 2002, Honolulu, HI, USA 2002 26 pp.
38. Labelle, M., 2002. An operational model to evaluate assessment and management procedures for the North Pacific swordfish fishery. NOAA-TM-NMFS-SWFSC-341, U.S. Department of Commerce, 53 pp.
39. P. Lehodey, and B. Leroy Age and growth of yellowfin tuna (Thunnus albacares) from the western and central Pacific Ocean as indicated by daily growth increments and tagging data. Working Paper No. YFT-2 Proceedings of the 12th Standing Committee on Tuna and Billfish Secretariat of the Pacific Community. Noumea, New Caledonia 1999 21 pp.
40. P. Lehodey, M. Bertignac, J. Hampton, A. Lewis, and J. Picaut El Niño southern oscillation and tuna in the western Pacific Nature 389 16 1997 715 718
41. M.N. Maunder, and G.M. Watters A-SCALA: an age-structured statistical catch-at-age analysis for assessing tuna stocks in the eastern Pacific Ocean IATTC Bull. 22 5 2003 435 509
42. U. Moore, and F. Sander A study of the offshore zooplankton of the tropical western Atlantic near Barbados Ophelia 16 1 1977 77 96
43. NRC (National Research Council), 1998. Improving Fish Stock Assessments. Committee on Fish Stock Assessment Methods. NRC National Academy Press, Washington, DC, 176 pp.
44. A.E. Punt, R.A. Campbell, and A.D.M. Smith Evaluating empirical indicators and reference points for fisheries management: application to the broadbill swordfish fishery off eastern Australia Mar. Freshwater Res. 52 6 2001 819 832
45. Restrepo, V.R., Thompson, G.G., Mace, P.M., Gabriel, W.L., Low, L.L., MacCall, A.D., Methot, R.D., Powers, J.E., Taylor, B.L., Wade, P.R., Witzig, J.F., 1998. Technical guidance on the use of precautionary approaches to implementing national standard 1 of the Magnuson-Stevens Fishery Conservation and Management Act. NOAA Technical Memorandum No. NMFS-F/SPO 31, 53 pp.
46. Richards, L.J., Schnute, J.T., Olsen, N., 1998. A statistical framework for analysis of limit reference points, pp. 185-198. In: Proceedings of the International Symposium on Fishery Stock Assessment Models for the 21st Century, October 8-11, 1997. University of Alaska Sea Grant College Program Report No. 98-01, Anchorage Alaska, 1037 pp.
47. A.A. Rosenberg, and J.R. Beddington Length-based methods of stock assessment J.A. Gulland Fish Population Dynamics 1988 Wiley New York 83 103
48. J.T. Schnute, and D. Fournier A new approach to length frequency analysis: growth structure Can. J. Fish. Aquat. Sci. 37 1980 1337 1351
49. J.T. Schnute A general framework for developing sequential fisheries model Can. J. Fish. Aquat. Sci. 51 1994 1676 1688
50. J.G. Shepherd, and J.G. Pope Dynamic pool models. II. Short term and long term forecasts of catch and biomass, pp. 164-188 P.J. Hart J.D. Reynolds Handbook of Fish Biology and Fisheries vol. II 2002 Blackwell Publishing 410 pp.
51. J. Sibert, and J. Hampton Mobility of tropical tunas and the implications for fisheries management Mar. Policy 27 2003 87 95
52. J.R. Sibert, J. Hampton, D.A. Fournier, and P.J. Bills An advection-diffusion-reaction model for estimation of fish movement parameters from tagging data, with application to skipjack tuna (Katsuwonus pelamis) Can. J. Fish. Aquat. Sci. 56 1999 925 938
53. Suzuki, Z., 1994. A review of the biology and fisheries for yellowfin tuna (Thunnus albacares) in the western and central ocean, pp. 108-137. In: Shomura, R., Majkowski, J., Langi, S. (Eds.), Interactions of Pacific Tuna Fisheries, vol. 2. Papers on Biology and Fisheries. FAO Fisheries Technical Paper No. 336/2, 439 pp.
54. United Nations (UN), 1995. Agreement for the implementation of the provisions of the United Nations Convention on the Law of the Sea of 10 December 1982 relating to the conservation and management of straddling fish stocks and highly migratory fish stocks. United Nations General Assembly Doc.A/CONF.164/37.