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Volumn 140, Issue 1-3, 2002, Pages 116-122

Conservation of an open-reading frame as an element affecting 5′ splice site selection

Author keywords

[No Author keywords available]

Indexed keywords

MESSENGER RNA;

EID: 12244289270     PISSN: 10478477     EISSN: None     Source Type: Journal    
DOI: 10.1016/S1047-8477(02)00539-7     Document Type: Conference Paper
Times cited : (18)

References (47)
  • 1
    • 15844406352 scopus 로고    scopus 로고
    • Nonsense mutations inhibit RNA splicing in a cell-free system: Recognition of mutant codon is independent of protein synthesis
    • Aoufouchi, S., Yelamos, J., Milstein, C., 1996. Nonsense mutations inhibit RNA splicing in a cell-free system: Recognition of mutant codon is independent of protein synthesis. Cell 85, 415-422.
    • (1996) Cell , vol.85 , pp. 415-422
    • Aoufouchi, S.1    Yelamos, J.2    Milstein, C.3
  • 2
    • 0027379866 scopus 로고
    • Molecular analysis of Hurler syndrome in Druze and Muslim Arab patients in Israel: Multiple allelic mutations of the IDUA gene in a small geographic area
    • Bach, G., Moskowitz, S.M., Tieu, P.T., Matynia, A., Neufeld, E.F., 1993. Molecular analysis of Hurler syndrome in Druze and Muslim Arab patients in Israel: Multiple allelic mutations of the IDUA gene in a small geographic area. Am. J. Hum. Genet. 53, 330-338.
    • (1993) Am. J. Hum. Genet. , vol.53 , pp. 330-338
    • Bach, G.1    Moskowitz, S.M.2    Tieu, P.T.3    Matynia, A.4    Neufeld, E.F.5
  • 3
    • 0029382603 scopus 로고
    • Finding splice sites within a wilderness of RNA
    • Black, D.L., 1995. Finding splice sites within a wilderness of RNA. RNA 1, 763-771.
    • (1995) RNA , vol.1 , pp. 763-771
    • Black, D.L.1
  • 4
    • 0001468848 scopus 로고    scopus 로고
    • Splicing of precursors to mRNAs by the spliceosomes
    • Gesteland, R.F., Cech, T.R., Atkins, J.F. (Eds.). Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY
    • Burge, C.B., Tuschl, T.H., Sharp, P.A., 1999. Splicing of precursors to mRNAs by the spliceosomes. In: Gesteland, R.F., Cech, T.R., Atkins, J.F. (Eds.), The RNA World, second ed. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY, pp. 525-560.
    • (1999) The RNA World, Second Ed. , pp. 525-560
    • Burge, C.B.1    Tuschl, T.H.2    Sharp, P.A.3
  • 5
    • 0037099302 scopus 로고    scopus 로고
    • A nonsense mutation in the fibrillin-1 gene of a Marfan syndrome patient induces NMD and disrupts an exonic splicing enhancer
    • Caputi, M., Kendzior Jr., R.J., Beemon, K.L., 2002. A nonsense mutation in the fibrillin-1 gene of a Marfan syndrome patient induces NMD and disrupts an exonic splicing enhancer. Genes Dev. 16, 1754-1759.
    • (2002) Genes Dev. , vol.16 , pp. 1754-1759
    • Caputi, M.1    Kendzior R.J., Jr.2    Beemon, K.L.3
  • 7
    • 0033082394 scopus 로고    scopus 로고
    • RNA surveillance
    • Culbertson, M.R., 1999. RNA surveillance. Trends Genet. 15, 74-80.
    • (1999) Trends Genet. , vol.15 , pp. 74-80
    • Culbertson, M.R.1
  • 8
    • 0028136599 scopus 로고
    • Maintenance of an open reading frame as an additional level of scrutiny during splice site selection
    • Dietz, H.C., Kendzior, R.J., 1994. Maintenance of an open reading frame as an additional level of scrutiny during splice site selection. Nat. Genet. 8, 183-188.
    • (1994) Nat. Genet. , vol.8 , pp. 183-188
    • Dietz, H.C.1    Kendzior, R.J.2
  • 10
    • 0034707668 scopus 로고    scopus 로고
    • Nuclear eukaryotic initiation factor 4E (eIF4E) colocalizes with splicing factors in speckles
    • Dostie, J., Lejbkowicz, F., Sonenberg, N., 2000. Nuclear eukaryotic initiation factor 4E (eIF4E) colocalizes with splicing factors in speckles. J. Cell Biol. 148, 239-247.
    • (2000) J. Cell Biol. , vol.148 , pp. 239-247
    • Dostie, J.1    Lejbkowicz, F.2    Sonenberg, N.3
  • 11
    • 0033636895 scopus 로고    scopus 로고
    • The yeast nuclear cap binding complex can interact with translation factor eIF4G and mediate translation initiation
    • Fortes, P., Inada, T., Preiss, T., Hentze, M.W., Mattaj, I.W., Sachs, A.B., 2000. The yeast nuclear cap binding complex can interact with translation factor eIF4G and mediate translation initiation. Mol. Cell 6, 191-196.
    • (2000) Mol. Cell , vol.6 , pp. 191-196
    • Fortes, P.1    Inada, T.2    Preiss, T.3    Hentze, M.W.4    Mattaj, I.W.5    Sachs, A.B.6
  • 12
    • 0032837376 scopus 로고    scopus 로고
    • Nonsense-mediated mRNA decay in health and disease
    • Frischmeyer, P.A., Dietz, H.C., 1999. Nonsense-mediated mRNA decay in health and disease. Hum. Mol. Genet. 8, 1893-1900.
    • (1999) Hum. Mol. Genet. , vol.8 , pp. 1893-1900
    • Frischmeyer, P.A.1    Dietz, H.C.2
  • 13
    • 0033529631 scopus 로고    scopus 로고
    • A premature termination codon in either exon of minute virus of mice P4 promoter-generated pre-mRNA can inhibit nuclear splicing of the intervening intron in an open reading frame-dependent manner
    • Gersappe, A., Burger, L., Pintel, D.J., 1999. A premature termination codon in either exon of minute virus of mice P4 promoter-generated pre-mRNA can inhibit nuclear splicing of the intervening intron in an open reading frame-dependent manner. J. Biol. Chem. 274, 22452-22458.
    • (1999) J. Biol. Chem. , vol.274 , pp. 22452-22458
    • Gersappe, A.1    Burger, L.2    Pintel, D.J.3
  • 15
    • 0025787954 scopus 로고
    • Biochemical mechanisms of constitutive and regulated pre-mRNA splicing
    • Green, M.R., 1991. Biochemical mechanisms of constitutive and regulated pre-mRNA splicing. Annu. Rev. Cell Biol. 7, 559-599.
    • (1991) Annu. Rev. Cell Biol. , vol.7 , pp. 559-599
    • Green, M.R.1
  • 16
    • 0033525169 scopus 로고    scopus 로고
    • A perfect message: RNA surveillance and nonsense-mediated decay
    • Hentze, M.W., Kulozik, A.E., 1999. A perfect message: RNA surveillance and nonsense-mediated decay. Cell 96, 307-310.
    • (1999) Cell , vol.96 , pp. 307-310
    • Hentze, M.W.1    Kulozik, A.E.2
  • 17
    • 0033375911 scopus 로고    scopus 로고
    • Mechanisms of mRNA surveillance in eukaryotes
    • Hilleren, P., Parker, R., 1999. Mechanisms of mRNA surveillance in eukaryotes. Annu. Rev. Genet. 33, 229-260.
    • (1999) Annu. Rev. Genet. , vol.33 , pp. 229-260
    • Hilleren, P.1    Parker, R.2
  • 18
    • 0035839002 scopus 로고    scopus 로고
    • Coupled transcription and translation within nuclei of mammalian cells
    • Iborra, F.J., Jackson, D.A., Cook, P.R., 2001. Coupled transcription and translation within nuclei of mammalian cells. Science 293, 1139-1142.
    • (2001) Science , vol.293 , pp. 1139-1142
    • Iborra, F.J.1    Jackson, D.A.2    Cook, P.R.3
  • 19
    • 0035823036 scopus 로고    scopus 로고
    • Evidence for a pioneer round of mRNA translation: mRNAs subject to nonsense-mediated decay in mammalian cells are bound by CBP80 and CBP20
    • Ishigaki, Y., Li, X., Serin, G., Maquat, L.E., 2001. Evidence for a pioneer round of mRNA translation: mRNAs subject to nonsense-mediated decay in mammalian cells are bound by CBP80 and CBP20. Cell 106, 607-617.
    • (2001) Cell , vol.106 , pp. 607-617
    • Ishigaki, Y.1    Li, X.2    Serin, G.3    Maquat, L.E.4
  • 20
    • 0029973094 scopus 로고    scopus 로고
    • Interrelationships of the pathways of mRNA decay and translation in eukaryotic cells
    • Jacobson, A., Peltz, S.W., 1996. Interrelationships of the pathways of mRNA decay and translation in eukaryotic cells. Annu. Rev. Biochem. 65, 693-739.
    • (1996) Annu. Rev. Biochem. , vol.65 , pp. 693-739
    • Jacobson, A.1    Peltz, S.W.2
  • 21
    • 0029891101 scopus 로고    scopus 로고
    • The structure and function of proteins involved in pre-mRNA splicing
    • Krämer, A., 1996. The structure and function of proteins involved in pre-mRNA splicing. Annu. Rev. Biochem. 65, 367-409.
    • (1996) Annu. Rev. Biochem. , vol.65 , pp. 367-409
    • Krämer, A.1
  • 23
    • 0032006979 scopus 로고    scopus 로고
    • Nonsense surveillance in lymphocytes?
    • Li, S., Wilkinson, M.F., 1998. Nonsense surveillance in lymphocytes? Immunity 8, 135-141.
    • (1998) Immunity , vol.8 , pp. 135-141
    • Li, S.1    Wilkinson, M.F.2
  • 24
    • 0035949674 scopus 로고    scopus 로고
    • A computational analysis of sequence features involved in recognition of short introns
    • Lim, L.P., Burge, C.B., 2001. A computational analysis of sequence features involved in recognition of short introns. Proc. Natl. Acad. Sci USA 98, 11193-11198.
    • (2001) Proc. Natl. Acad. Sci USA , vol.98 , pp. 11193-11198
    • Lim, L.P.1    Burge, C.B.2
  • 25
    • 0035158730 scopus 로고    scopus 로고
    • A mechanism for exon skipping caused by nonsense or missense mutations in BRCA1 and other genes
    • Liu, H.X., Cartegni, L., Zhang, M.Q., Krainer, A.R., 2001. A mechanism for exon skipping caused by nonsense or missense mutations in BRCA1 and other genes. Nat. Genet. 27, 55-58.
    • (2001) Nat. Genet. , vol.27 , pp. 55-58
    • Liu, H.X.1    Cartegni, L.2    Zhang, M.Q.3    Krainer, A.R.4
  • 26
    • 0028147091 scopus 로고
    • Low cytoplasmic mRNA levels of immimoglobulin κ light chain genes containing nonsense codons correlate with inefficient splicing
    • Lozano, F., Maertzdorf, B., Pannell, R., Milstein, C., 1994. Low cytoplasmic mRNA levels of immimoglobulin κ light chain genes containing nonsense codons correlate with inefficient splicing. EMBO J. 13, 4617-4622.
    • (1994) EMBO J. , vol.13 , pp. 4617-4622
    • Lozano, F.1    Maertzdorf, B.2    Pannell, R.3    Milstein, C.4
  • 27
    • 0032509304 scopus 로고    scopus 로고
    • Proofreading and aminoacylation of tRNAs before export from the nucleus
    • Lund, E., Dahlberg, J.E., 1998. Proofreading and aminoacylation of tRNAs before export from the nucleus. Science 282, 2082-2085.
    • (1998) Science , vol.282 , pp. 2082-2085
    • Lund, E.1    Dahlberg, J.E.2
  • 28
    • 0029330286 scopus 로고
    • When cells stop making sense: Effects of nonsense codons on RNA metabolism in vertebrate cells
    • Maquat, L.E., 1995. When cells stop making sense: Effects of nonsense codons on RNA metabolism in vertebrate cells. RNA 1, 453-465.
    • (1995) RNA , vol.1 , pp. 453-465
    • Maquat, L.E.1
  • 29
    • 0037099212 scopus 로고    scopus 로고
    • NASty effects on fibrillin pre-mRNA splicing: Another case of ESE does, but proposals for translation-dependent splice site choice live on
    • Maquat, L.E., 2002. NASty effects on fibrillin pre-mRNA splicing: Another case of ESE does, but proposals for translation-dependent splice site choice live on. Genes Dev. 16, 1743-1753.
    • (2002) Genes Dev. , vol.16 , pp. 1743-1753
    • Maquat, L.E.1
  • 30
    • 0036422206 scopus 로고    scopus 로고
    • Cryoelectron microscopy and cryoelectron tomography of the nuclear pre-mRNA processing machine
    • Medalia, O., Typke, D., Hegerl, R., Angenitzki, M., Sperling, J., Sperling, R., 2002. Cryoelectron microscopy and cryoelectron tomography of the nuclear pre-mRNA processing machine. J. Struct. Biol. 138, 74-84.
    • (2002) J. Struct. Biol. , vol.138 , pp. 74-84
    • Medalia, O.1    Typke, D.2    Hegerl, R.3    Angenitzki, M.4    Sperling, J.5    Sperling, R.6
  • 31
    • 0028071845 scopus 로고
    • Heat shock affects 5′ splice site selection, cleavage and ligation of CAD pre-mRNA in hamster cells, but not its packaging in InRNP particles
    • Miriami, E., Sperling, J., Sperling, R., 1994. Heat shock affects 5′ splice site selection, cleavage and ligation of CAD pre-mRNA in hamster cells, but not its packaging in InRNP particles. Nucleic Acids Res. 22, 3084-3091.
    • (1994) Nucleic Acids Res. , vol.22 , pp. 3084-3091
    • Miriami, E.1    Sperling, J.2    Sperling, R.3
  • 32
    • 0020050314 scopus 로고
    • A catalogue of splice junction sequences
    • Mount, S.M., 1982. A catalogue of splice junction sequences. Nucleic Acids Res. 10, 459-472.
    • (1982) Nucleic Acids Res. , vol.10 , pp. 459-472
    • Mount, S.M.1
  • 33
    • 0032561135 scopus 로고    scopus 로고
    • A supraspliceosome model for large nuclear ribonucleoprotein particles based on mass determinations by scanning transmission electron microscopy
    • Müller, S., Wolpensinger, B., Angenitzki, M., Engel, A., Sperling, J., Sperling, R., 1998. A supraspliceosome model for large nuclear ribonucleoprotein particles based on mass determinations by scanning transmission electron microscopy. J. Mol. Biol. 283, 383-394.
    • (1998) J. Mol. Biol. , vol.283 , pp. 383-394
    • Müller, S.1    Wolpensinger, B.2    Angenitzki, M.3    Engel, A.4    Sperling, J.5    Sperling, R.6
  • 34
    • 0026694808 scopus 로고
    • Nonsense mutations inhibit splicing of MVM RNA in cis when they interrupt the reading frame of either exon of final spliced product
    • Naeger, L.K., Schoborg, R.V., Zhao, Q., Tullis, G.E., Pintel, D.J., 1992. Nonsense mutations inhibit splicing of MVM RNA in cis when they interrupt the reading frame of either exon of final spliced product. Genes Dev. 6, 1107-1119.
    • (1992) Genes Dev. , vol.6 , pp. 1107-1119
    • Naeger, L.K.1    Schoborg, R.V.2    Zhao, Q.3    Tullis, G.E.4    Pintel, D.J.5
  • 35
    • 0027340359 scopus 로고
    • Analysis of factor VIII mRNA reveals defects in everyone of 28 haemophilia A patients
    • Naylor, J.A., Green, P.M., Rizza, C.R., Giannelli, F., 1993. Analysis of factor VIII mRNA reveals defects in everyone of 28 haemophilia A patients. Hum. Mol. Genet. 2, 11-17.
    • (1993) Hum. Mol. Genet. , vol.2 , pp. 11-17
    • Naylor, J.A.1    Green, P.M.2    Rizza, C.R.3    Giannelli, F.4
  • 36
    • 0025826050 scopus 로고
    • Lysosomal storage diseases
    • Neufeld, E.F., 1991. Lysosomal storage diseases. Annu. Rev. Biochem. 60, 257-280.
    • (1991) Annu. Rev. Biochem. , vol.60 , pp. 257-280
    • Neufeld, E.F.1
  • 37
    • 0023245404 scopus 로고
    • Signals for the selection of a splice site in pre-mRNA computer analysis of splice junction sequences and like sequences
    • Ohshima, Y., Gotoh, Y., 1987. Signals for the selection of a splice site in pre-mRNA computer analysis of splice junction sequences and like sequences. J. Mol. Biol. 195, 247-259.
    • (1987) J. Mol. Biol. , vol.195 , pp. 247-259
    • Ohshima, Y.1    Gotoh, Y.2
  • 38
    • 0020032074 scopus 로고
    • Structure of the gene for CAD, the multifunctional protein that initiates UMP synthesis in Syrian hamster cells
    • Padgett, R.A., Wahl, G.M., Stark, G.R., 1982. Structure of the gene for CAD, the multifunctional protein that initiates UMP synthesis in Syrian hamster cells. Mol. Cell. Biol. 2, 293-301.
    • (1982) Mol. Cell. Biol. , vol.2 , pp. 293-301
    • Padgett, R.A.1    Wahl, G.M.2    Stark, G.R.3
  • 39
    • 0035811009 scopus 로고    scopus 로고
    • RNA editing activity is associated with splicing factors in lnRNP particles: The nuclear pre-mRNA processing machinery
    • Raitskin, O., Cho, D.S., Sperling, J., Nishikura, K., Sperling, R., 2001. RNA editing activity is associated with splicing factors in lnRNP particles: The nuclear pre-mRNA processing machinery. Proc. Natl. Acad. Sci. USA 98, 6571-6576.
    • (2001) Proc. Natl. Acad. Sci. USA , vol.98 , pp. 6571-6576
    • Raitskin, O.1    Cho, D.S.2    Sperling, J.3    Nishikura, K.4    Sperling, R.5
  • 40
    • 0023651307 scopus 로고
    • RNA splice junctions of different classes of eukaryotes: Sequence statistics and functional implications in gene expression
    • Shapiro, M.B., Senapathy, P., 1987. RNA splice junctions of different classes of eukaryotes: Sequence statistics and functional implications in gene expression. Nucleic Acids Res. 15, 7155-7174.
    • (1987) Nucleic Acids Res. , vol.15 , pp. 7155-7174
    • Shapiro, M.B.1    Senapathy, P.2
  • 41
    • 0027487938 scopus 로고
    • Exon skipping and translation in patients with frameshift deletions in the dystrophin gene
    • Sherratt, T.G., Vulliamy, T., Dubowitz, V., Sewry, C.A., Strong, P.N., 1993. Exon skipping and translation in patients with frameshift deletions in the dystrophin gene. Am. J. Hum. Genet. 53, 1007-1015.
    • (1993) Am. J. Hum. Genet. , vol.53 , pp. 1007-1015
    • Sherratt, T.G.1    Vulliamy, T.2    Dubowitz, V.3    Sewry, C.A.4    Strong, P.N.5
  • 43
    • 0032489021 scopus 로고    scopus 로고
    • Mechanical devices of the spliceosome: Motors, clocks, springs, and things
    • Staley, J.P., Guthrie, C., 1998. Mechanical devices of the spliceosome: Motors, clocks, springs, and things. Cell 92, 315-326.
    • (1998) Cell , vol.92 , pp. 315-326
    • Staley, J.P.1    Guthrie, C.2
  • 44
    • 0029858773 scopus 로고    scopus 로고
    • Introns and reading frames: Correlation between splicing sites and their codon positions
    • Tomita, M., Shimizu, N., Brutlag, D.L., 1996. Introns and reading frames: Correlation between splicing sites and their codon positions. Mol. Biol. Evol. 13, 1219-1223.
    • (1996) Mol. Biol. Evol. , vol.13 , pp. 1219-1223
    • Tomita, M.1    Shimizu, N.2    Brutlag, D.L.3
  • 45
    • 0024349521 scopus 로고
    • Nonsense mutations in the dihydrofolate reductase gene affect RNA processing
    • Urlaub, G., Mitchell, P.J., Ciudad, C.J., Chasin, L.A., 1989. Nonsense mutations in the dihydrofolate reductase gene affect RNA processing. Mol. Cell. Biol. 9, 2868-2880.
    • (1989) Mol. Cell. Biol. , vol.9 , pp. 2868-2880
    • Urlaub, G.1    Mitchell, P.J.2    Ciudad, C.J.3    Chasin, L.A.4
  • 46
    • 0031667970 scopus 로고    scopus 로고
    • The association of nonsense codons with exon skipping
    • Valentine, C.R., 1998. The association of nonsense codons with exon skipping. Mutat. Res. 411, 87-117.
    • (1998) Mutat. Res. , vol.411 , pp. 87-117
    • Valentine, C.R.1


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