Molecular detection and characterization of nodavirus in several marine fish species from the northeastern Atlantic

Diseases of Aquatic Organisms

Volumn 62, Issue 3, 2004, Pages 181-189

  Gagne N ^a   Johnson, S C ^b   Cook Versloot, M ^c   MacKinnon, A M ^a   Olivier, G ^a  

^a FISHERIES AND OCEANS CANADA   (Canada)

^b NATIONAL RESEARCH COUNCIL CANADA   (Canada)

^c Research and Productivity Council   (Canada)

Author keywords

Atlantic cod; Haddock; Nodaviruses; Phylogenetic analysis; RT PCR

Indexed keywords

DETECTION METHOD; FISH; HATCHERY; MOLECULAR ANALYSIS; POLYMERASE CHAIN REACTION; VIRAL DISEASE;

ATLANTIC OCEAN; ATLANTIC OCEAN (NORTHWEST); OCEANIC REGIONS; WORLD;

ATLANTIC HALIBUT NODAVIRUS; GADUS MORHUA; MELANOGRAMMUS AEGLEFINUS; NODAVIRIDAE; PISCES; PLEURONECTOIDEI; PSEUDOPLEURONECTES AMERICANUS;

EID: 12244284905     PISSN: 01775103     EISSN: None     Source Type: Journal    
DOI: 10.3354/dao062181     Document Type: Article

References (21)

1. Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ (1990) Basic local alignment search tool. J Mol Biol 215:403-410
2. Barker DE, MacKinnon AM, Boston L, Burt MDB and 6 others (2002) First report of piscine nodavirus infecting wild winter flounder Pleuronectes americanus in Passamaquoddy Bay, New Brunswick, Canada. Dis Aquat Org 49:99-105
3. Cusack RR, MacKinnon AM, Boston L, Peach R, Groman D (2002) Experimental exposure of juvenile Atlantic cod, haddock and Atlantic halibut to nodavirus isolated from Atlantic cod and haddock and the effects of cross-infectivity. In: Harrington KS (ed) Proc 4th Int Symp Aquatic Animal Health. American Fisheries Society, New Orleans, LA, Corrigenda piii
4. Dalla Valle L, Zanella L, Patarnello P, Paolucci L, Belvedere P, Colombo L (2000) Development of a sensitive diagnostic assay for fish nervous necrosis virus based on RT-PCR plus nested PCR. J Fish Dis 23:321-327
5. Felsenstein J (1997) An alternating least squares approach to inferring phylogenies from pairwise distances. Syst Biol 46:101-111
6. Fisher AJ, Johnson JE (1993) Ordered duplex RNA controls capsid architecture in an icosahedral animal virus. Nature 361:176-179
7. Grotmol S, Nerland AH, Biering E, Totland GK, Nishizawa T (2000) Characterization of the capsid protein gene from a nodavirus strain affecting the Atlantic halibut Hippoglossus hippoglossus and design of an optimal reverse-transcriptase polymerase chain reaction (RT-PCR) detection assay. Dis Aquat Org 39:79-88
8. Johnson SC, Sperker SA, Leggiadro CT, Groman DB, Griffiths SG, Ritchie RJ, Cook MD, Cusack RR (2002) Identification and characterization of a piscine neuropathy and nodavirus from juvenile Atlantic cod from the Atlantic coast of North America. J Aquat Anim Health 14:124-133
9. Kaesberg P, Dasgupta R, Sgro JY, Wery JP, Selling BH, Hosur MV, Johnson JE (1990) Structural homology among four nodaviruses as deduced by sequencing and X-ray crystallography. J Mol Biol 214:423-435
10. Mori K, Nakai T, Muroga K, Arimoto M, Mushiake K, Furusawa I (1992) Properties of a new virus belonging to nodaviridae found in larval striped jack (Pseudocaranx dentex) with nervous necrosis. Virology 187:368-371
11. Munday BL, Kwang J, Moody N (2002) Betanodavirus infections in teleost fish: a review. J Fish Dis 25:127-142
12. Nishizawa T, Mori K, Nakai T, Furusawa I, Muroga K (1994) Polymerase chain reaction (PCR) amplification of RNA of striped jack nervous necrosis virus (SJNNV). Dis Aquat Org 18:103-107
13. Nishizawa T, Muroga K, Arimoto M (1996) Failure of the polymerase chain reaction (PCR) method to detect striped jack nervous necrosis virus (SJNNV) in striped jack Pseudocaranx dentex selected as spawners. J Aquat Anim Health 8:332-334
14. Nishizawa T, Furuhashi M, Nagai T, Nakai T, Muroga K (1997) Genomic classification of fish nodaviruses by molecular phylogenetic analysis of the coat protein gene. Appl Environ Microbiol 63:1633-1636
15. Page RD (1996) Tree View: an application to display phylogenetic trees on personal computers. Comput Appl Biosci 12:357-358
16. Schmidt HA, Strimmer K, Vingron M, von Haeseler A (2002) TREE-PUZZLE: maximum-likelihood phylogenetic analysis using quartets and parallel computing. Bioinformatics 18:502-504
17. Starkey WG, Ireland JH, Muir KF, Jenkins ME, Roy WJ, Richards RH, Ferguson HW (2001) Nodavirus infection in Atlantic cod and Dover sole in the UK. Vet Rec 149:179-181
18. Thiery R, Arnauld C, Delsert C (1999) Two isolates of sea bass, Dicentrarchus labrax L., nervous necrosis virus with distinct genomes. J Fish Dis 3:201-207
19. Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG (1997) The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25:4876-4882
20. Van Regenmortel MHV, Fauquet CM, Bishop DHL, Barstens EB and 7 others (2000) Virus taxonomy, VIIth report of the ICTV Academic Press, San Diego, CA
21. Yoshikoshi K, Inoue K (1990) Viral nervous necrosis in hatchery-reared larvae and juveniles of Japanese parrot-fish, Oplegnathus fasciatus (Temminck & Schlegel). J Fish Dis 13:69-77