Molecular cloning, differential expression, and functional characterization of a family of class I ubiquitin-conjugating enzyme (E2) genes in cotton (Gossypium)

Biochimica et Biophysica Acta - Gene Structure and Expression

Volumn 1625, Issue 3, 2003, Pages 269-279

  Zhang, Xiang Dong ^a   Jenkins, Johnie N ^b,c   Callahan, Franklin E ^b,c   Creech, Roy G ^c   Si, Yang ^c   McCarty, Jack C ^b,c   Saha, Sukumar ^b,c   Ma, Din Pow ^a  

^a MISSISSIPPI STATE UNIVERSITY   (United States)

^b CROP SCIENCE RESEARCH LABORATORY   (United States)

^c MISSISSIPPI STATE UNIVERSITY   (United States)

Author keywords

Gene expression; Gossypium; Senescence; Ubiquitin conjugating enzyme; Yeast complementation

Indexed keywords

AUXIN; COMPLEMENTARY DNA; UBIQUITIN CONJUGATING ENZYME;

AMINO ACID SEQUENCE; ARTICLE; COTTON; FLOWER; FUNGAL GENE; FUNGUS MUTANT; GENE EXPRESSION; GENE FUNCTION; GENE IDENTIFICATION; GENETIC ANALYSIS; GENETIC CODE; GENETIC COMPLEMENTATION; GENETIC TRANSCRIPTION; GENOME; GENOME ANALYSIS; MOLECULAR CLONING; MULTIGENE FAMILY; NONHUMAN; NUCLEOTIDE SEQUENCE; PLANT AGE; PLANT FIBER; PLANT GENETICS; PLANT LEAF; PLANT ROOT; PRIORITY JOURNAL; PROTEIN DEGRADATION; PROTEIN FAMILY; PROTEIN FUNCTION; PROTEIN TARGETING; SENESCENCE;

GOSSYPIUM; GOSSYPIUM ARBOREUM; GOSSYPIUM HIRSUTUM; GOSSYPIUM RAIMONDII; GOSSYPIUM THURBERI; HIRSUTUM;

EID: 12244276744     PISSN: 01674781     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0167-4781(02)00623-1     Document Type: Article

References (35)

1. Laney J.D., Hochstrasser M. Substrate targeting in the ubiquitin system. Cell. 97:1999;427-430.
2. del Pozo J.C., Estelle M. F-box protein and protein degradation: an emerging theme in cellular regulation. Plant Mol. Biol. 44:2000;123-128.
3. Hershko A., Ciechanover A. The ubiquitin system. Ann. Rev. Biochem. 67:1998;425-479.
4. Jentsch S. The ubiquitin-conjugation system. Annu. Rev. Genet. 26:1992;179-207.
5. Seufert W., Jentsch S. Ubiquitin-conjugating enzymes UBC4 and UBC5 mediate selective degradation of short-lived and abnormal proteins. EMBO J. 9:1990;543-550.
6. Treier M., Seufert W., Jentsch S. Drosophila UbcD1 encodes a highly conserved ubiquitin-conjugating enzyme involved in selective protein degradation. EMBO J. 11:1992;367-372.
7. Liu Z.M., Kolattukudy P.E. Identification of a gene product induced by hard-surface contact of Colletotrichum gloeosporioides conidia as a ubiquitin-conjugating enzyme by yeast complementation. J. Bacteriol. 180:1998;3592-3597.
8. Zhen M., Heinlein R., Jones D., Jentsch S., Candido E.P. The ubc-2 gene of Caenorhabditis elegans encodes a ubiquitin-conjugating enzyme involved in selective protein degradation. Mol. Cell. Biol. 13:1993;1371-1377.
9. Oughtred R., Bedard N., Vrielink A., Wing S.S. Identification of amino acid residues in a class I ubiquitin-conjugating enzyme involved in determining specificity of conjugation of ubiquitin to proteins. J. Biol. Chem. 173:1998;18435-18442.
10. Wing S.S., Jain P. Molecular cloning, expression and characterization of a ubiquitin conjugation enzyme (E2(17)kB) highly expressed in rat testis. Biochem. J. 305:1995;125-132.
11. Wing S.S., Bedard N., Morales C., Hingamp P., Trasler J. A novel rat homolog of the Saccharomyces cerevisiae ubiquitin-conjugating enzymes UBC4 and UBC5 with distinct biochemical features is induced during spermatogenesis. Mol. Cell. Biol. 16:1996;4064-4072.
12. Jensen J.P., Bates P.W., Yang M., Vierstra R.D., Weissman A.M. Identification of a family of closely related human ubiquitin conjugating enzymes. J. Biol. Chem. 270:1995;30408-30414.
13. Girod P.A., Carpenter T.B., Nocker S., Sullivan M.L., Vierstra R.D. Homologs of the essential ubiquitin conjugating enzymes UBC1, 4, and 5 in yeast are encoded by a multigene family in Arabidopsis thaliana. Plant J. 3:1993;545-552.
14. Picton S., Gray J.E., Lowe A., Barton S.L., Grierson D. Sequence of a cloned tomato ubiquitin conjugating enzyme. Plant Physiol. 103:1993;1471-1472.
15. Woo H.H., Brigham L.A., Hawes M.C. Primary structure of the mRNA encoding a 16.5-kDa ubiquitin-conjugating enzyme of Pisum sativum. Gene. 148:1994;369-370.
16. Chen X., Wang B., Wu R. A gibberellin-stimulated ubiquitin-conjugating enzyme gene is involved in α-amylase gene expression in rice aleurone. Plant Mol. Biol. 29:1995;787-795.
17. X.D. Zhang, Isolation and characterization of two cotton cDNAs and corresponding genes encoding ubiquitin-conjugating enzymes, MS Thesis, Mississippi State University 1998.
18. Paterson A.H., Brubaker C.L., Wendel J.F. A rapid method for extraction of cotton (Gossypium spp.) genomic DNA suitable for RFLP or PCR analysis. Plant. Mol. Biol. Report. 11:1993;122-127.
19. Sambrook J., Fritsch E.F., Maniatis T. Molecular Cloning: A Laboratory Manual. 2nd ed. 1989;Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
20. Hughes D.W., Galau G. Preparation of RNA from cotton leaves and pollen. Plant. Mol. Biol. Report. 6:1988;253-257.
21. Hodgson C.P., Fisk R.Z. Hybridization probe size control: optimized "oligolabelling" Nucleic Acids Res. 15:1987;6295.
22. Jentsch S., Seufert W., Sommer T., Reins H.A. Ubiquitin-conjugating enzymes: novel regulators of eukaryotic cells. Trends Biochem. Sci. 15:1990;195-198.
23. Sullivan M.L., Vierstra R.D. Cloning of a 16-kDa ubiquitin carrier protein from wheat and Arabidopsis thaliana: identification of functional domain by in vitro mutagenesis. J. Biol. Chem. 266:1991;23878-23885.
24. Sharp P.A. Speculations on RNA splicing. Cell. 23:1981;643-646.
25. An Y.Q., Huang S., McDowell J.M., Mckinney E.C., Meager R.B. Conserved expression of the Arabidopsis ACT1 and ACT3 actin subclass in organ primordia and mature pollen. Plant Cell. 8:1996;15-30.
26. Loguerico L.L., Zhang J.Q., Wilkins T.A. Differential regulation of six novel MYB-domain genes defines two distinct expression patterns in allotetraploid cotton (Gossypium hirsutum L.). MGG, Mol. Gen. Genet. 261:1999;660-671.
27. Wendel J.F. New World tetraploid cottons contain Old World cytoplasm. Proc. Natl. Acad. Sci. U. S. A. 86:1989;4132-4136.
28. Small R.L., Wendel J.F. Copy number lability and evolutionary dynamics of the Adh gene family in diploid and tetraploid cotton (Gossypium). Genetics. 155:2000;1913-1926.
29. Grula J.W., Hudspeth R.L., Hobbs S.L., Anderson D.M. Organization, inheritance and expression of acetohydroxyacid synthase genes in the cotton allotetraploid Gossypium hirsutum. Plant Mol. Biol. 28:1995;837-846.
30. Ferguson D.L., Turley R.B., Kloth R.H. Identification of a delta-TIP cDNA clone and determination of related A and D genome subfamilies in Gossypium species. Plant Mol. Biol. 34:1997;111-118.
31. Genschik P., Durr A., Fleck J. Differential expression of several E2-type ubiquitin carrier protein genes at different developmental stages in Arabidopsis thaliana and Nicotiana sylvestris. MGG, Mol. Gen. Genet. 244:1994;548-556.
32. Garbarino J.E., Belknap W.R. Isolation of a ubiquitin-ribosomal protein gene (ubi3) from potato and expression of its promoter in transgenic plants. Plant Mol. Biol. 24:1994;119-127.
33. Woo H.R., Chung K.M., Park J.H., Oh S.A., Ahn T., Hong S.H., Jang S.K., Nam H.G. ORE9, an F-box protein that regulates leaf senescence in Arabidopsis. Plant Cell. 13:2001;1779-1790.
34. Nooden L.D. The phenomenon of senescence and aging. Nooden L.D., Leopold A.C. Senescence and Aging in Plants. 1988;1-50 Academic Press, San Diego, CA.
35. Christiansen M.N. Influence of atmospheric parameters on growth and development. Mauney J.R., Stewart J.M. Cotton Physiology. 1986;39-46 The Cotton Foundation, Memphis, TN.