-
1
-
-
0002851927
-
Extraction of DNA from soils and sediments
-
P. F. Kemp, B. F. Sherr, and J. J. Cole (ed.). Lewis Publishers, Boca Raton, Fla.
-
Atlas, R. M. 1993. Extraction of DNA from soils and sediments, p. 261-266 In P. F. Kemp, B. F. Sherr, and J. J. Cole (ed.), Handbook of methods in aquatic microbial ecology. Lewis Publishers, Boca Raton, Fla.
-
(1993)
Handbook of Methods in Aquatic Microbial Ecology
, pp. 261-266
-
-
Atlas, R.M.1
-
2
-
-
0031763993
-
Analysis of subfossil molecular remains of purple sulfur bacteria in a lake sediment
-
Coolen, M. J., and J. Overmann. 1998. Analysis of subfossil molecular remains of purple sulfur bacteria in a lake sediment. Appl. Environ. Microbiol. 64:4513-4521.
-
(1998)
Appl. Environ. Microbiol.
, vol.64
, pp. 4513-4521
-
-
Coolen, M.J.1
Overmann, J.2
-
3
-
-
0033151424
-
Nucleic acid concentrations (DNA, RNA) in the continental and deep-sea sediments of the Eastern Mediterranean: Relationships with seasonal varying organic inputs and bacterial dynamics
-
Danovaro, R., A. Dell'Anno, A. Pusceddu, and M. Fabiano. 1999. Nucleic acid concentrations (DNA, RNA) in the continental and deep-sea sediments of the Eastern Mediterranean: relationships with seasonal varying organic inputs and bacterial dynamics. Deep-Sea Res. 46:1077-1094.
-
(1999)
Deep-Sea Res.
, vol.46
, pp. 1077-1094
-
-
Danovaro, R.1
Dell'Anno, A.2
Pusceddu, A.3
Fabiano, M.4
-
4
-
-
0002790939
-
The distribution and molecular weight of dissolved DNA in subtropical estuarine and oceanic environments
-
DeFlaun, M. F., and W. H. Jeffrey. 1987. The distribution and molecular weight of dissolved DNA in subtropical estuarine and oceanic environments. Mar. Ecol. Prog. Ser. 38:65-73.
-
(1987)
Mar. Ecol. Prog. Ser.
, vol.38
, pp. 65-73
-
-
DeFlaun, M.F.1
Jeffrey, W.H.2
-
5
-
-
0032832869
-
Pelagicbenthic coupling of nucleic acids in an abyssal location of the northeastern Atlantic Ocean
-
Dell'Anno A., M. Fabiano, M. L. Mei, and R. Danovaro. 1999. Pelagicbenthic coupling of nucleic acids in an abyssal location of the northeastern Atlantic Ocean. Appl Environ Microbiol 65:4451-4457.
-
(1999)
Appl. Environ. Microbiol.
, vol.65
, pp. 4451-4457
-
-
Dell'Anno, A.1
Fabiano, M.2
Mei, M.L.3
Danovaro, R.4
-
6
-
-
12244302037
-
Nucleic acid turnover in aquatic environments. 1. Determination of total and extracellular DNA in marine sediments
-
A. D. L. Akkermans, J. D. van Elsas, and F. J. De Bruijn (ed.). Kluwer Academic Publishers, Dordrecht, The Netherlands
-
Dell'Anno, A., and R. Danovaro. 2001. Nucleic acid turnover in aquatic environments. 1. Determination of total and extracellular DNA in marine sediments, p. 1-9. In A. D. L. Akkermans, J. D. van Elsas, and F. J. De Bruijn (ed.), Molecular microbial ecology manual. Kluwer Academic Publishers, Dordrecht, The Netherlands.
-
(2001)
Molecular Microbial Ecology Manual
, pp. 1-9
-
-
Dell'Anno, A.1
Danovaro, R.2
-
7
-
-
0031687910
-
Nucleic acid (DNA, RNA) quantification and RNA/DNA ratio determination in marine sediments: Comparison of spectrophotometric, fluorometric, and high-performance liquid chromatography methods and estimation of detrital DNA
-
Dell'Anno, A., M. Fabiano, G. C. A. Duineveld, A. Kok, and R. Danovaro. 1998. Nucleic acid (DNA, RNA) quantification and RNA/DNA ratio determination in marine sediments: comparison of spectrophotometric, fluorometric, and high-performance liquid chromatography methods and estimation of detrital DNA. Appl. Environ. Microbiol. 64:3238-3245.
-
(1998)
Appl. Environ. Microbiol.
, vol.64
, pp. 3238-3245
-
-
Dell'Anno, A.1
Fabiano, M.2
Duineveld, G.C.A.3
Kok, A.4
Danovaro, R.5
-
8
-
-
0036092095
-
Quantification, base composition and fate of extracellular DNA in marine sediments
-
Dell'Anno, A., S. Bompadre, and R. Danovaro. 2002. Quantification, base composition and fate of extracellular DNA in marine sediments. Limnol. Oceanogr. 47:899-905.
-
(2002)
Limnol. Oceanogr.
, vol.47
, pp. 899-905
-
-
Dell'Anno, A.1
Bompadre, S.2
Danovaro, R.3
-
9
-
-
0032710940
-
Quantification of bias related to the extraction of DNA directly from soils
-
Frostegard, A., S. Courtois, V. Ramisse, S. Clerc, D. Bernillon, F. Le Gall, P. Jeannin, X. Nesme, and P. Simonet. 1999. Quantification of bias related to the extraction of DNA directly from soils. Appl. Environ. Microbiol. 65: 5409-5420.
-
(1999)
Appl. Environ. Microbiol.
, vol.65
, pp. 5409-5420
-
-
Frostegard, A.1
Courtois, S.2
Ramisse, V.3
Clerc, S.4
Bernillon, D.5
Le Gall, F.6
Jeannin, P.7
Nesme, X.8
Simonet, P.9
-
10
-
-
0031982528
-
Microbial evolution, diversity and ecology: A decade of RNA analysis of uncultivated microorganisms
-
Head, I. M., J. R. Saunders, and R. W. Pickup. 1998. Microbial evolution, diversity and ecology: a decade of RNA analysis of uncultivated microorganisms. Microb. Ecol. 35:1-21.
-
(1998)
Microb. Ecol.
, vol.35
, pp. 1-21
-
-
Head, I.M.1
Saunders, J.R.2
Pickup, R.W.3
-
11
-
-
0028104341
-
Gene transfer in the marine environment
-
Hermansson, M., and C. Linberg. 1994. Gene transfer in the marine environment. FEMS Microbiol. Ecol. 15:47-54.
-
(1994)
FEMS Microbiol. Ecol.
, vol.15
, pp. 47-54
-
-
Hermansson, M.1
Linberg, C.2
-
12
-
-
0023866522
-
DNA probe method for the detection of specific microorganisms in the soil bacterial community
-
Holben, W. E., J. K. Jansson, B. K. Chelm, and J. M. Tiedje. 1988. DNA probe method for the detection of specific microorganisms in the soil bacterial community. Appl. Environ. Microbiol. 54:703-711.
-
(1988)
Appl. Environ. Microbiol.
, vol.54
, pp. 703-711
-
-
Holben, W.E.1
Jansson, J.K.2
Chelm, B.K.3
Tiedje, J.M.4
-
13
-
-
0035487188
-
Simultaneous recovery of RNA and DNA from soils and sediments
-
Hurt, R. A., X. Qiu, L. Wu, Y. Roh, A. V. Palumbo, J. M. Tiedje, and J. Zhou. 2001. Simultaneous recovery of RNA and DNA from soils and sediments. Appl. Environ. Microbiol. 67:4495-4503.
-
(2001)
Appl. Environ. Microbiol.
, vol.67
, pp. 4495-4503
-
-
Hurt, R.A.1
Qiu, X.2
Wu, L.3
Roh, Y.4
Palumbo, A.V.5
Tiedje, J.M.6
Zhou, J.7
-
14
-
-
0001351054
-
Bacterial uptake and utilization of dissolved DNA
-
Jørgensen, N. O. G., and C. S. Jacobsen. 1996. Bacterial uptake and utilization of dissolved DNA. Aquat. Microb. Ecol. 11:263-270
-
(1996)
Aquat. Microb. Ecol.
, vol.11
, pp. 263-270
-
-
Jørgensen, N.O.G.1
Jacobsen, C.S.2
-
15
-
-
0343725734
-
Extraction and purification of DNA from organic rich subsurface sediments (ODP Leg 169S)
-
Juniper, S. K., M.-A. Cambon, F. Lesonger, and G. Barbier. 2001. Extraction and purification of DNA from organic rich subsurface sediments (ODP Leg 169S). Mar. Geol. 174:241-247.
-
(2001)
Mar. Geol.
, vol.174
, pp. 241-247
-
-
Juniper, S.K.1
Cambon, M.-A.2
Lesonger, F.3
Barbier, G.4
-
16
-
-
0001857117
-
16S/23S rRNA sequencing
-
E. Stackebrandt and M. Goodfellow (ed.). Wiley, New York, N.Y.
-
Lane, D. J. 1991. 16S/23S rRNA sequencing, p. 115-175. In E. Stackebrandt and M. Goodfellow (ed.), Nucleic acid techniques in bacterial systematics. Wiley, New York, N.Y.
-
(1991)
Nucleic Acid Techniques in Bacterial Systematics
, pp. 115-175
-
-
Lane, D.J.1
-
17
-
-
0028136885
-
Bacterial gene transfer by natural genetic transformation in the environment
-
Lorenz, M. G., and W. Wackernagel. 1994. Bacterial gene transfer by natural genetic transformation in the environment. Microbiol. Rev. 58:563-602.
-
(1994)
Microbiol. Rev.
, vol.58
, pp. 563-602
-
-
Lorenz, M.G.1
Wackernagel, W.2
-
18
-
-
0035349953
-
DNA extraction from soils: Old bias for new microbial diversity analysis methods
-
Martin-Laurent, F., L. Philippot, S. Hallet, R. Chaussod, J. C. Germon, G. Soulas, and G. Catroux. 2001. DNA extraction from soils: old bias for new microbial diversity analysis methods. Appl. Environ. Microbiol. 67:2354-2359.
-
(2001)
Appl. Environ. Microbiol.
, vol.67
, pp. 2354-2359
-
-
Martin-Laurent, F.1
Philippot, L.2
Hallet, S.3
Chaussod, R.4
Germon, J.C.5
Soulas, G.6
Catroux, G.7
-
19
-
-
0032703237
-
Evaluation and optimization of DNA extraction and purification for soils and sediment samples
-
Miller, D. N., J. E. Bryant, E. L. Madsen, and W. C. Ghiorse. 1999. Evaluation and optimization of DNA extraction and purification for soils and sediment samples. Appl. Environ. Microbiol. 65:4715-4724.
-
(1999)
Appl. Environ. Microbiol.
, vol.65
, pp. 4715-4724
-
-
Miller, D.N.1
Bryant, J.E.2
Madsen, E.L.3
Ghiorse, W.C.4
-
20
-
-
0027460328
-
Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA
-
Muyzer, G., E. C. de Waal, and A. G. Uitterlinden. 1993. Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA. Appl. Environ. Microbiol. 59:695-700.
-
(1993)
Appl. Environ. Microbiol.
, vol.59
, pp. 695-700
-
-
Muyzer, G.1
De Waal, E.C.2
Uitterlinden, A.G.3
-
21
-
-
0031687533
-
Horizontal gene transfer from transgenic plants to terrestrial bacteria - A rare event
-
Nielsen, K. M., A. M. Bones, K. Smalla, and J. D. van Elsas. 1998. Horizontal gene transfer from transgenic plants to terrestrial bacteria - a rare event. FEMS Microbiol. Rev. 22:79-103.
-
(1998)
FEMS Microbiol. Rev.
, vol.22
, pp. 79-103
-
-
Nielsen, K.M.1
Bones, A.M.2
Smalla, K.3
Van Elsas, J.D.4
-
22
-
-
0001437234
-
Degradation of dead microbial biomass in a marine sediment
-
Novitsky, J. A. 1986. Degradation of dead microbial biomass in a marine sediment. Appl. Environ. Microbiol. 52:504-509.
-
(1986)
Appl. Environ. Microbiol.
, vol.52
, pp. 504-509
-
-
Novitsky, J.A.1
-
23
-
-
0006121013
-
Influence of deep ocean sewage outfalls on the microbial activity of the surrounding sediments
-
Novitsky, J. A., and D. M. Karl. 1985. Influence of deep ocean sewage outfalls on the microbial activity of the surrounding sediments. Appl. Environ. Microbiol. 50:1464-1473.
-
(1985)
Appl. Environ. Microbiol.
, vol.50
, pp. 1464-1473
-
-
Novitsky, J.A.1
Karl, D.M.2
-
24
-
-
0034682335
-
Lateral gene transfer and the nature of bacterial innovation
-
Ochman, H., J. G., Lawrence, and E. A. Groisman. 2000. Lateral gene transfer and the nature of bacterial innovation. Nature 405:299-304.
-
(2000)
Nature
, vol.405
, pp. 299-304
-
-
Ochman, H.1
Lawrence, J.G.2
Groisman, E.A.3
-
27
-
-
0000736677
-
Turnover of extracellular DNA in eutrophic and oligotrophic freshwater environments of southwest Florida
-
Paul, J. H., A. W. David, M. F. DeFlaun, and L. H. Cazares. 1989. Turnover of extracellular DNA in eutrophic and oligotrophic freshwater environments of southwest Florida. Appl. Environ. Microbiol. 55:1823-1828.
-
(1989)
Appl. Environ. Microbiol.
, vol.55
, pp. 1823-1828
-
-
Paul, J.H.1
David, A.W.2
DeFlaun, M.F.3
Cazares, L.H.4
-
28
-
-
0025804888
-
Adsorption of plasmid DNA to mineral surfaces and protection against DNase I
-
Romanowski, G., M. G. Lorenz, and W. Wackernagel. 1991. Adsorption of plasmid DNA to mineral surfaces and protection against DNase I. Appl. Environ. Microbiol. 57:1057-1061.
-
(1991)
Appl. Environ. Microbiol.
, vol.57
, pp. 1057-1061
-
-
Romanowski, G.1
Lorenz, M.G.2
Wackernagel, W.3
-
29
-
-
0034882012
-
Extraction and purification of microbial DNA from soil and sediment samples
-
Rose-Amseleg, C. L., E. Garnier-Sillam, and M. Harry. 2001. Extraction and purification of microbial DNA from soil and sediment samples. Appl. Soil Ecol. 18:47-60.
-
(2001)
Appl. Soil Ecol.
, vol.18
, pp. 47-60
-
-
Rose-Amseleg, C.L.1
Garnier-Sillam, E.2
Harry, M.3
-
30
-
-
0024218461
-
Recovery of DNA from soils and sediments
-
Steffan, R. J., J. Goksoyr, A. K. Bej, and R. M. Atlas. 1988. Recovery of DNA from soils and sediments. Appl. Environ. Microbiol. 54:2908-2915.
-
(1988)
Appl. Environ. Microbiol.
, vol.54
, pp. 2908-2915
-
-
Steffan, R.J.1
Goksoyr, J.2
Bej, A.K.3
Atlas, R.M.4
-
31
-
-
0025903592
-
Rapid method for direct extraction of DNA from soil and sediments
-
Tsai, Y. L., and B. H. Olson. 1991. Rapid method for direct extraction of DNA from soil and sediments. Appl. Environ. Microbiol. 57:1070-1074.
-
(1991)
Appl. Environ. Microbiol.
, vol.57
, pp. 1070-1074
-
-
Tsai, Y.L.1
Olson, B.H.2
-
32
-
-
0026615106
-
Release of bacterial DNA by marine nanoflagellates, an intermediate step in phosphorus regeneration
-
Turk, V., A.-S. Rehnstam, E. Lundberg, and A. Hagstrom. 1992. Release of bacterial DNA by marine nanoflagellates, an intermediate step in phosphorus regeneration. Appl. Environ. Microbiol. 58:3744-3750.
-
(1992)
Appl. Environ. Microbiol.
, vol.58
, pp. 3744-3750
-
-
Turk, V.1
Rehnstam, A.-S.2
Lundberg, E.3
Hagstrom, A.4
-
33
-
-
0037741943
-
Diverse plant and animal genetic records from Holocene and Pleistocene sediments
-
Willerslev, E. A. J. Hansen, J. Binladen, T. B. Brand, M. T. P. Gilbert, B. Shapiro, M. Bunce, C. Wiuf, D. A. Gilichinsky, and A. Cooper. 2003. Diverse plant and animal genetic records from Holocene and Pleistocene sediments. Science 300:791-795.
-
(2003)
Science
, vol.300
, pp. 791-795
-
-
Willerslev, E.1
Hansen, A.J.2
Binladen, J.3
Brand, T.B.4
Gilbert, M.T.P.5
Shapiro, B.6
Bunce, M.7
Wiuf, C.8
Gilichinsky, D.A.9
Cooper, A.10
-
34
-
-
0030748867
-
Inhibition and facilitation of nucleic acid amplification
-
Wilson, I. G. 1997. Inhibition and facilitation of nucleic acid amplification. Appl. Environ. Microbiol. 63:3741-3751.
-
(1997)
Appl. Environ. Microbiol.
, vol.63
, pp. 3741-3751
-
-
Wilson, I.G.1
-
36
-
-
0037394735
-
Mechanisms underlying the impact of humic acids on DNA quantification by SYBR Green I and consequences for the analysis of soils and aquatic sediments
-
Zipper, H., C. Buta, K. Lämmle, H. Brunner, J. Bernhagen, and F. Vitzthum. 2003. Mechanisms underlying the impact of humic acids on DNA quantification by SYBR Green I and consequences for the analysis of soils and aquatic sediments. Nucleic Acids Res. 31:e39.
-
(2003)
Nucleic Acids Res.
, vol.31
-
-
Zipper, H.1
Buta, C.2
Lämmle, K.3
Brunner, H.4
Bernhagen, J.5
Vitzthum, F.6
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