Expression of flap endonuclease-1 during meiosis in a basidiomycete, Coprinus cinereus

Fungal Genetics and Biology

Volumn 41, Issue 5, 2004, Pages 493-500

  Yamaguchi, Taiki ^a   Namekawa, Satoshi H ^a   Hamada, Fumika N ^a   Kasai, Nobuyuki ^a   Nara, Takayuki ^a,b   Watanabe, Kei ^a   Iwabata, Kazuki ^a   Ishizaki, Takashi ^a   Ishii, Satomi ^a   Koshiyama, Akiyo ^a   Inagaki, Sachiyo ^a,c   Kimura, Seisuke ^a   Sakaguchi, Kengo ^a  

^a TOKYO UNIVERSITY OF SCIENCE   (Japan)

^b UNIVERSITY OF ILLINOIS AT URBANA CHAMPAIGN   (United States)

^c OKAYAMA UNIVERSITY   (Japan)

Author keywords

Inserted sequence; Pachytene; Proliferating cell nuclear antigen; Zygotene

Indexed keywords

ARACHIDONATE 5 LIPOXYGENASE ACTIVATING PROTEIN; DEOXYRIBONUCLEASE I;

AMINO ACID SEQUENCE; ARTICLE; BASIDIOMYCETES; CELL CYCLE S PHASE; COPRINUS CINEREUS; EUKARYOTE; FUNGAL STRAIN; FUNGUS ISOLATION; GENE EXPRESSION; GENE INSERTION; HYBRIDIZATION; MEIOSIS; MOLECULAR WEIGHT; NONHUMAN; NORTHERN BLOTTING; OPEN READING FRAME; PRIORITY JOURNAL; PROPHASE; PROTEIN EXPRESSION; SEQUENCE HOMOLOGY;

AMINO ACID SEQUENCE; AMINO ACIDS; COPRINUS; DNA LIGASES; DNA, COMPLEMENTARY; DNA, FUNGAL; FLAP ENDONUCLEASES; GENE EXPRESSION REGULATION, FUNGAL; MEIOSIS; MODELS, MOLECULAR; MOLECULAR SEQUENCE DATA; MOLECULAR WEIGHT; OPEN READING FRAMES; PHYLOGENY; PROLIFERATING CELL NUCLEAR ANTIGEN; PROPHASE; RNA, FUNGAL; RNA, MESSENGER; S PHASE; SEQUENCE ANALYSIS, DNA; SEQUENCE HOMOLOGY, AMINO ACID;

COPRINOPSIS CINEREA; COPRINUS; EUKARYOTA;

EID: 12144286113     PISSN: 10871845     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.fgb.2004.01.008     Document Type: Article

References (33)

1. Felsenstein J. Confidence limits on phylogenies: an approach using the bootstrap. Evolution. 39:1985;783-791.
2. Freudenreich C.H., Kantrow S.M., Zakian V.A. Expansion and length-dependent fragility of CTG repeats in yeast. Science. 279:1998;853-856.
3. Guex N., Peitsch M.C. SWISS-MODEL and the Swiss-PdbViewer: an environment for comparative protein modeling. Electrophoresis. 18:1997;2714-2723.
4. Gurr S.J., Unkles S.E., Kinghorn J.R. The structure and organization of nuclear genes of filament fungi. Kinghorn J.R. Gene structure in eukaryotic microbes. 1987;93-139 IRL Press, London.
5. Hamada F., Namekawa S., Kasai N., Nara T., Kimura S., Sugawara F., Sakaguchi K. Proliferating cell nuclear antigen from a basidiomycete, Coprinus cinereus. Alternative truncation and expression in meiosis. Eur. J. Biochem. 269:2002;164-174.
6. Harrington J.J., Lieber M.R. Functional domains within FEN-1 and RAD2 define a family of structure-specific endonucleases: implications for nucleotide excision repair. Genes Dev. 8:1994;1344-1355.
7. Hotta Y., Stern H. Analysis of DNA synthesis during meiotic prophase in Lilium. J. Mol. Biol. 55:1971;337-355.
8. ′ exonuclease for the stability of simple repetitive DNA Science. 269:1995;238-240.
9. Kimura S., Suzuki T., Yanagawa Y., Yamamoto T., Nakagawa H., Tanaka I., Hashimoto J., Sakaguchi K. Characterization of plant proliferating cell nuclear antigen (PCNA) and flap endonuclease-1 (FEN-1), and their distribution in mitotic and meiotic cell cycles. Plant J. 28:2001;643-653.
10. Kimura S., Ueda T., Hatanaka M., Takenouchi M., Hashimoto J., Sakaguchi K. Plant homologue of flap endonuclease-1: molecular cloning, characterization, and evidence of expression in meristematic tissues. Plant Mol Biol. 42:2000;415-427.
11. Kitamura A., Kouroku Y., Onoue M., Kimura S., Takenouchi M., Sakaguchi K. A new meiotic endonuclease from Coprinus meiocytes. Biochim. Biophys. Acta. 1342:1997;205-216.
12. Levin D.S., McKenna A.E., Motycka T.A., Matsumoto Y., Tomkinson A.E. Interaction between PCNA and DNA ligase I is critical for joining of Okazaki fragments and long-patch base-excision repair. Curr. Biol. 10:2000;919-922.
13. Lieber M.R. The FEN-1 family of structure-specific nucleases in eukaryotic DNA replication, recombination and repair. Bioessays. 19:1997;233-240.
14. Lu B.C., Jeng D.Y. Meiosis in Coprinus VII. The prekaryogamy S-phase and the postkaryogamy DNA replication in C. lagopus. J. Cell Sci. 17:1975;461-470.
15. Lu B.C., Sakaguchi K. An endo-exonuclease from meiotic tissues of the basidiomycete Coprinus cinereus. Its purification and characterization. J. Biol. Chem. 266:1991;21060-21066.
16. Maga G., Villani G., Tillement V., Stucki M., Locatelli G.A., Frouin I., Spadari S., Hubscher U. Okazaki fragment processing: modulation of the strand displacement activity of DNA polymerase delta by the concerted action of replication protein A, proliferating cell nuclear antigen, and flap endonuclease-1. Proc. Natl. Acad. Sci. USA. 98:2001;14298-14303.
17. Matsui E., Musti K.V., Abe J., Yamasaki K., Matsui I., Harata K. Molecular structure and novel DNA binding sites located in loops of flap endonuclease-1 from Pyrococcus horikoshii. J. Biol. Chem. 277:2002;37840-37847.
18. 2. Nucleic Acids Res. 30:2002;3273-3277.
19. Murray J.M., Tavassoli M., al-Harithy R., Sheldrick K.S., Lehmann A.R., Carr A.M., Watts F.Z. Structural and functional conservation of the human homolog of the Schizosaccharomyces pombe rad2 gene, which is required for chromosome segregation and recovery from DNA damage. Mol. Cell. Biol. 14:1994;4878-4888.
20. Namekawa S., Hamda F., Sawado T., Ishi S., Nara T., Ishizaki T., Ohuchi T., Arai T., Sakaguchi K. Dissociation of DNA polymerase α-primase complex during meiosis in Coprinus Cinereus. Eur.J.Biochem. 270:2003;1-10.
21. Namekawa S., Ichijima Y., Hamada F., Kasai N., Iwabata K., Nara T., Teraoka H., Sugawara F., Sakaguchi K. DNA ligase IV from a Basidiomycete, Coprinus cinereus, and its expression during meiosis. Microbiology. 149:2003;2111-2118.
22. Namekawa S., Hamada F., Ishii S., Ichijima Y., Yamaguchi T., Nara T., Kimura S., Ishizaki T., Iwabata K., Koshiyama A., Teraoka H., Sakaguchi K. Coprinus cinereus DNA ligase I during meiotic development. Biochim. Biophys. Acta. 1627:2003;47-55.
23. Nara T., Hamada F., Namekawa S., Sakaguchi K. Strand exchange reaction in vitro and DNA-dependent ATPase activity of recombinant LIM15/DMC1 and RAD51 proteins from Coprinus cinereus. Biochem. Biophys. Res. Commun. 285:2001;92-97.
24. Nara T., Saka T., Sawado T., Takase H., Ito Y., Hotta Y., Sakaguchi K. Isolation of a LIM15/DMC1 homolog from the basidiomycete Coprinus cinereus and its expression in relation to meiotic chromosome pairing. Mol. Gen. Genet. 262:1999;781-789.
25. Peitsch M.C. ProMod and Swiss-Model: Internet-based tools for automated comparative protein modeling. Biochem. Soc. Trans. 24:1996;274-279.
26. Peitsch M.C., Wells T.N., Stampf D.R., Sussman J.L. The Swiss-3DImage collection and PDB-Browser on the World-Wide Web. Trends Biochem. Sci. 20:1995;82-84.
27. Plug A.W., Xu J., Reddy G., Golub E.I., Ashley T. Presynaptic association of Rad51 protein with selected sites in meiotic chromatin. Proc. Natl. Acad. Sci. USA. 93:1996;5920-5924.
28. Pukkila P.J., Lu B.C. Silver staining of meiotic chromosomes in the fungus, Coprinus cinereus. Chromosoma. 91:1985;108-112.
29. Pukkila P.J., Yashar B.M., Binninger D.M. Analysis of meiotic development in Coprinus cinereus. Symp. Soc. Exp. Biol. 38:1984;177-194.
30. Raju N.B., Lu B.C. Meiosis in Coprinus: III. Timing of meiotic events in C. lagopus (sensu Buller). Can. J. Bot. 48:1970;2183-2186.
31. Sakaguchi K., Lu B.C. Meiosis in Coprinus: characterization and activities of two forms of DNA polymerase during meiotic stages. Mol. Cell Biol. 2:1982;752-757.
32. Towbin H., Staehelin T., Gordon J. Electrophoretic transfer of proteins from polyacrylamide gels to nitrocellulose sheets: procedure and some applications. Proc. Natl. Acad. Sci. USA. 76:1979;4350-4534.
33. Villeneuve A.M., Hillers K.J. Whence meiosis? Cell. 106:2001;647-650.