Polarized intercalation site in Z-DNA

Supramolecular Chemistry

Volumn 9, Issue 1, 1998, Pages 37-46

  Taylor, Eric R ^a   Wiechelman, Karen ^a  

^a UNIVERSITY OF LOUISIANA AT LAFAYETTE   (United States)

Author keywords

Conformationally polarized; Intercalation; Z DNA

Indexed keywords

EID: 11644303676     PISSN: 10610278     EISSN: None     Source Type: Journal    
DOI: 10.1080/10610279808034965     Document Type: Article

References (66)

1. Gessner, R. (1989). High Resolution X-Ray Diffraction Studies of Z-DNA, Cambridge, Berlin, pp. 36-183.
2. Wang, A. H.-J., Gessner, R. V., van der Marel, G. A., van Boom, J. H. and Rich, A. (1985). Proc. Natl. Acad. Sci. (USA), 82, 3611.
3. Hebert, A. and Rich, A. (1996). J. Biol. Chem., 271, 11595.
4. Wang, A. H.-J., Quigley, G. J., Kolpak, F. J., Crawford, J. L., van Boom, J. H., van der Marel, G. and Rich, A. (1979). Nature, 282, 680.
5. Ericksson, M., Norden, B., Lycksell, P.-O., Graslund, A. and Jemstrom, B. (1985). J. Chem. Soc. Chem. Commun., 17, 1300.
6. Wang, A. H.-J., Hakoshima, T., van der Marel, G., van Boom, J. H. and Rich, A. (1984). Cell, 37, 321.
7. Schroth, G. P., Kagawa, T. F. and Ho, P. S. (1993). Biochemistry, 32, 13381.
8. Gessner, R. V., Frederick, C. A., Quigley, G. J., Rich, A. and Wang, A. H.-J. (1989). J. Biol. Chem., 264, 7921.
9. Arnott, S., Chandrasekaran, R., Birdsall, D. L., Leslie, A. G. W. and Ratliff, R. L. (1980). Nature, 283, 743.
10. Santella, R. M., Grunberger, D., Weinstein, I. B. and Rich, A. (1981). Proc. Natl. Acad. Sci. (USA), 78, 1451.
11. Sobell, H. M., and Jain, S. C. (1972). J. Mol. Biol., 68, 21.
12. Sakore, T. D., Jain, S. C., Tsai, C.-C. and Sobell, H. M. (1977). Proc. Natl. Acad. Sci. (USA), 74, 188.
13. Seeman, N. C., Day, R. O. and Rich, A. (1975). Nature, 253, 324.
14. Tsai, C.-C., Jain, S. C. and Sobell, H. M. (1975). Proc. Natl. Acad. Sci. (USA), 72, 628.
15. Jain, S. C., Tsai, C.-C. and Sobell, H. M. (1977). J. Mol. Biol., 114, 317.
16. Berman, H. M., Neidle, S. and Stodola, R. K. (1978). Proc. Natl. Acad. Sci. (USA), 75, 828.
17. Neidle, S., Taylor, G., Sanderson, M., Shieh, H.-S. and Berman, H. M. (1978). Nucl. Acids Res., 11, 4417.
18. Wang, A. H.-J., Nathans, J., van der Marel, G., van Boom, J. H. and Rich, A. (1978). Nature, 276, 471.
19. Sakore, T. D., Reddy, B. S. and Sobell, H. M. (1979). J. Mol. Biol., 135, 763.
20. Jain, S. C., Bhandary, K. K. and Sobell, H. M. (1979). J. Mol. Biol., 135, 813.
21. Reddy, B. S., Seshadri, T. P., Skaore, T. D. and Sobell, H. M. (1979). J. Mol. Biol., 135, 787.
22. Wang, A. H.-J., Quigley, G. J. and Rich, A. (1979). Nucl. Acids Res., 6, 3879.
23. Shieh, H.-S., Berman, H. M., Dabrow, M. and Neidle, S. (1980). Nucl. Acids Res., 8, 85.
24. Westhof, E. and Sundaralingam, M. (1980). Proc. Natl. Acad. Sci. (USA), 77, 1852.
25. Westhof, E. and Sundaralingam, M. (1980). J. Mol. Biol., 142, 331.
26. Quigley, G. J., Wang, A. H.-J., Ugetto, G., van der Marel, G., van Boom, J. H. and Rich, A. (1980). Proc. Natl. Acad. Sci. (USA), 77, 7201.
27. Viswamitra, M. A., Kennard, O., Cruse, W. B. T., Egert, E., Sheldrick, G. M., Jones, P. G., Waring, M. J., Wakelin, L. P. G. and Olsen, R. K. (1981). Nature, 289, 817.
28. Hingerty, B. and Broyde, S. (1982). Biochemistry, 21, 3243.
29. Miller, K. J. (1979). Biopolymers, 18, 959.
30. Miller, K. J. and Pycior, J. F. (1979). Biopolymers, 18, 2683.
31. Miller, K. J. (1980). in Proceedings of the Second SUNYA Conversation in the Discipline Biomolecular Stereodynamics, R. H. Sarma, (Ed.), Vol. II, Adenine Press, New York, p. 469.
32. Taylor, E. R. and Olson, W. K. (1983). Biopolymers, 22, 2667.
33. Newlin, D. D., Miller, K. J. and Pilch, D. F. (1983). Biopolymers, 23, 139.
34. Miller, K. J. and Newlin, D. D. (1982). Biopolymers, 21, 633.
35. Sarma, M. H., Mitra, C. K., Sarma, R. H., Miller, K. J. and Archer, S. (1980). Biochem. Biophys. Res. Comm., 94, 1285.
36. Miller, K. J., Burbaum, J. J. and Dommen, J. (1981). in Polynuclear Aromatic Hydrocarbons: Sixth International Symposium on Physical and Biological Chemistry, Columbus, OH, p. 515.
37. Miller, K. J., Lauer, M. and Archer, S. (1980). Intl. J. Quant. Chem.: Quant. Biol., 7, 11.
38. Taylor, E. R. and Miller, K. J. (1984). Biopolymers, 23, 2853.
39. Taylor, E. R., Miller, K. J. and Bleyer, A. J. (1983). J. Biomol. Struct. Dyn., 1, 883.
40. Miller, K. J., Taylor, E. R., Basch, H., Krauss, M. and Stevens, W. J. (1985). J. Biomol. Struct. Dyn., 2, 1157.
41. Bonnet, M. and Taylor, E. R. (1989). J. Biomol. Struct. Dyn., 7, 127.
42. Taylor, E. R. (1992). J. Biomol Struct. Dyn., 10, 533.
43. Neidle, S. (1981). in Topics in Nucleic Acid Structure, S. Neidle (Ed.), Halsted Press, New York, p. 177, refs. therein.
44. LeBreton, P. R. (1984). in Polycyclic Hydrocarbons and Carcinogenesis, R. G. Harvey (Ed.), ACS Symposium Series 283, American Chemical Society, Washington, DC, p. 209.
45. Miller, K. J., Taylor, E. R. and Dommen, J. (1984). in Polycyclic Hydrocarbons and Carcinogenesis, R. G. Harvey (Ed.), ACS Symposium Series 283, American Chemical Society, Washington, DC, p. 239.
46. Berman, H. M. and Neidle, S. (1979). in Stereodynamics of Macromolecular Systems, R. H. Sarma (Ed.), Pergamon Press, New York, p. 367.
47. Taylor, E. R. (1996) in preparation.
48. Taylor, E. R. (1995). J. Chem. Ed., 72, 236.
49. CompuAdd C466D, 486DX2, 540 Mbyte Hard Drive, 12 Mbyte RAM, 2 Mbyte Video RAM.
50. Fortran Power Station, 32 bit, Version 1.0 a, Microsoft Corp.
51. PC version of Mainframe software, beta test, Computer Associates.
52. x is the tilt of the base pairs about the X-axis (also called the kink angle in refs. 38, 39, and 42).
53. Suter, U. W. (1979). J. Am. Chem. Soc., 101, 6481.
54. Sundaralingam, M. (1974). in Structure and Conformation of Nucleic Acids and Protein-Nucleic Acid Interactions, Sundaralingam and Rao (Eds.), University Park press, Baltimore, p. 487.
55. Rich, A., Nordheim, A. and Wang, A. H.-J. (1984). Ann. Rev. Biochem., 53, 791.
56. Sobell, H. M., Lozansky, E. D. and Lessen, M. (1979). Cold Spring Harbor Symp. Quant. Biol., 43, 11.
57. Sobell, H. M., Lozansky, E. D. and Lessen, M. (1979). Energy Res. Abstr., 4, Abstr. No. 31443.
58. th, 2, 553.
59. Bond, P. J., Langridge, R., Jennette, K. W. and Lippard, S. (1975). Proc. Natl. Acad. Sci. (USA), 72, 4825.
60. Crothers, D. M. (1968). Biopolymers, 6, 575.
61. Rich, A., Quigley, G. J. and Wang, A. H.-J. (1979). in Stereodynamics of Molecular Systems, R. H. Sarma (Ed.), Pergamon Press, New York, pp. 315-330.
62. Arnott, S., Bond, P. J. and Chandrasekaran, R. (1980). Nature, 287, 561.
63. Taylor, E. R. (1981). PhD Thesis, Rutgers University, New Brunswick, NJ, 1981.
64. Walker, T. T., Stone, M. P. and Krugh, T. R. (1985). Biochemistry, 24, 7471.
65. Chaires, J. B. (1985). Biochemistry, 24, 7479.
66. Hard, T., Hiort, C. and Norden, B. (1987). J. Biomolec. Struct. Dyn., 5, 89.