-
1
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
Altschul SF, Madden TL, Schäffer AA, Zhang J, Zhang Z, Miller W, Lipman DJ. 1997. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucl. Acids Res. 25: 3389-3402.
-
(1997)
Nucl. Acids Res.
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schäffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
2
-
-
0034716945
-
Conservation and variation in superantigen structure and activity highlighted by the three-dimensional structures of two new superantigens from Streptococcus pyogenes
-
Arcus VL, Proft T, Sigrell JA, Baker HM, Fraser JD, Baker EN. 2000. Conservation and variation in superantigen structure and activity highlighted by the three-dimensional structures of two new superantigens from Streptococcus pyogenes. J. Mol. Biol. 299(1): 157-168.
-
(2000)
J. Mol. Biol.
, vol.299
, Issue.1
, pp. 157-168
-
-
Arcus, V.L.1
Proft, T.2
Sigrell, J.A.3
Baker, H.M.4
Fraser, J.D.5
Baker, E.N.6
-
4
-
-
0032981961
-
Free energy landscapes of encounter complexes in protein-protein association
-
Camacho CJ, Weng Z, Vajda S, DeLisi C. 1999. Free energy landscapes of encounter complexes in protein-protein association. Biophys. J. 76: 1166-1178.
-
(1999)
Biophys. J.
, vol.76
, pp. 1166-1178
-
-
Camacho, C.J.1
Weng, Z.2
Vajda, S.3
DeLisi, C.4
-
5
-
-
0024346908
-
Interaction of Staphylococcus aureus toxin 'superantigens' with human T cells
-
Choi YW, Kotzin B, Herron L, Callahan J, Marrack P, Kappler J. 1989. Interaction of Staphylococcus aureus toxin 'superantigens' with human T cells. Proc. Natl Acad. Sci. USA 86: 8941-8945.
-
(1989)
Proc. Natl Acad. Sci. USA
, vol.86
, pp. 8941-8945
-
-
Choi, Y.W.1
Kotzin, B.2
Herron, L.3
Callahan, J.4
Marrack, P.5
Kappler, J.6
-
6
-
-
0029985104
-
Crystal structure of a T-cell receptor beta-chain complexed with a superantigen
-
Fields BA, Malchiodi EL, Li H, Ysern X, Stauffacher CV, Schlievert PM, Karjalainen K, Mariuzza RA. 1996. Crystal structure of a T-cell receptor beta-chain complexed with a superantigen. Nature 384: 188-192.
-
(1996)
Nature
, vol.384
, pp. 188-192
-
-
Fields, B.A.1
Malchiodi, E.L.2
Li, H.3
Ysern, X.4
Stauffacher, C.V.5
Schlievert, P.M.6
Karjalainen, K.7
Mariuzza, R.A.8
-
7
-
-
0024503250
-
High-affinity binding of staphylococcal enterotoxins A and B to HLA-DR
-
Fraser JD. 1989. High-affinity binding of staphylococcal enterotoxins A and B to HLA-DR. Nature 339: 221-223.
-
(1989)
Nature
, vol.339
, pp. 221-223
-
-
Fraser, J.D.1
-
8
-
-
0342751302
-
Superantigens - Powerful modifiers of the immune system
-
Fraser J, Arcus V, Kong P, Baker E, Proft T. 2000. Superantigens - powerful modifiers of the immune system. Mol. Med. Today 6: 125-132.
-
(2000)
Mol. Med. Today
, vol.6
, pp. 125-132
-
-
Fraser, J.1
Arcus, V.2
Kong, P.3
Baker, E.4
Proft, T.5
-
9
-
-
0031473847
-
SWISS-MODEL and the Swiss-PdbViewer: An environment for comparative protein modeling
-
All figures were made with the program Swissprot
-
Guex N, Peitsch MC. 1997. SWISS-MODEL and the Swiss-PdbViewer: an environment for comparative protein modeling. Electrophoresis 18: 2714-2723. (All figures were made with the program Swissprot www.expasy.org/spdbv/)
-
(1997)
Electrophoresis
, vol.18
, pp. 2714-2723
-
-
Guex, N.1
Peitsch, M.C.2
-
10
-
-
0003544049
-
-
Vdf Hochschulverlag AG an der ETH Zürich: Zürich
-
Gunsteren van WF, Billeter SR, Eising AA, Hünenberger PH, Krüger P, Mark AE, Scott WRP, Tironi IG. 1996. Biomolecular Simulation: The GROMOS96 Manual and User Guide. Vdf Hochschulverlag AG an der ETH Zürich: Zürich.
-
(1996)
Biomolecular Simulation: The GROMOS96 Manual and User Guide
-
-
Van Gunsteren, W.F.1
Billeter, S.R.2
Eising, A.A.3
Hünenberger, P.H.4
Krüger, P.5
Mark, A.E.6
Scott, W.R.P.7
Tironi, I.G.8
-
11
-
-
0037018102
-
Structure of a complex of the human alpha/beta T cell receptor (TCR) HA1.7, influenza hemagglutinin peptide, and major histocompatibility complex class II molecule, HLA-DR4 (DRA*0101 and DRB1*0401): Insight into TCR cross-restriction and alloreactivity
-
Hennecke J, Wiley DC. 2002. Structure of a complex of the human alpha/beta T cell receptor (TCR) HA1.7, influenza hemagglutinin peptide, and major histocompatibility complex class II molecule, HLA-DR4 (DRA*0101 and DRB1*0401): insight into TCR cross-restriction and alloreactivity. J. Exp. Med. 195: 571-581.
-
(2002)
J. Exp. Med.
, vol.195
, pp. 571-581
-
-
Hennecke, J.1
Wiley, D.C.2
-
12
-
-
0034329441
-
Structure of a covalently stabilized complex of a human alpha/beta T-cell receptor, influenza HA peptide and MHC class II molecule, HLA-DR1
-
Hennecke J, Carfi A, Wiley DC. 2000. Structure of a covalently stabilized complex of a human alpha/beta T-cell receptor, influenza HA peptide and MHC class II molecule, HLA-DR1. EMBO J. 19: 5611-5624.
-
(2000)
EMBO J.
, vol.19
, pp. 5611-5624
-
-
Hennecke, J.1
Carfi, A.2
Wiley, D.C.3
-
13
-
-
1242272034
-
Design of chimeric receptor mimics with different TcRVβ isoforms: Type-specific inhibition of superantigen pathogenesis
-
Hong-Geller E, Möllhoff M, Shiflett PR, Gupta G. 2004. Design of chimeric receptor mimics with different TcRVβ isoforms: type-specific inhibition of superantigen pathogenesis. J. Biol. Chem. JBC, 279: 5676-5684.
-
(2004)
J. Biol. Chem. JBC
, vol.279
, pp. 5676-5684
-
-
Hong-Geller, E.1
Möllhoff, M.2
Shiflett, P.R.3
Gupta, G.4
-
14
-
-
23444454615
-
Three-dimensional structure of a human class II histocompatibility molecule complexed with superantigen
-
Jardetzky TS, Brown JH, Gorga JC, Stern LJ, Urban RG, Chi YI, Stauffacher C, Strominger JL, Wiley DC. 1994. Three-dimensional structure of a human class II histocompatibility molecule complexed with superantigen. Nature 368: 711-718.
-
(1994)
Nature
, vol.368
, pp. 711-718
-
-
Jardetzky, T.S.1
Brown, J.H.2
Gorga, J.C.3
Stern, L.J.4
Urban, R.G.5
Chi, Y.I.6
Stauffacher, C.7
Strominger, J.L.8
Wiley, D.C.9
-
15
-
-
0035812599
-
Energetics, stability, and prediction of transmembrane helices
-
Jayasinghe S, Hristova K, White SH. 2001. Energetics, stability, and prediction of transmembrane helices. J. Mol. Biol. 312: 927-934.
-
(2001)
J. Mol. Biol.
, vol.312
, pp. 927-934
-
-
Jayasinghe, S.1
Hristova, K.2
White, S.H.3
-
16
-
-
0024309955
-
V beta-specific stimulation of human T cells by staphylococcal toxins
-
Kappler J, Kotzin B, Herron L, Gelfand EW, Bigler RD, Boylston A, Carrel S, Posnett DN, Choi Y, Marrack P. 1989. V beta-specific stimulation of human T cells by staphylococcal toxins. Science 244: 811-813.
-
(1989)
Science
, vol.244
, pp. 811-813
-
-
Kappler, J.1
Kotzin, B.2
Herron, L.3
Gelfand, E.W.4
Bigler, R.D.5
Boylston, A.6
Carrel, S.7
Posnett, D.N.8
Choi, Y.9
Marrack, P.10
-
17
-
-
0028168571
-
Binding of a soluble alpha beta T-cell receptor to super-antigen/major histocompatibility complex ligands
-
Kappler J, White J, Kozono H, Clements J, Marrack P. 1994. Binding of a soluble alpha beta T-cell receptor to super-antigen/major histocompatibility complex ligands. Proc. Natl Acad. Sci. USA 91: 8462-8466.
-
(1994)
Proc. Natl Acad. Sci. USA
, vol.91
, pp. 8462-8466
-
-
Kappler, J.1
White, J.2
Kozono, H.3
Clements, J.4
Marrack, P.5
-
18
-
-
0035853281
-
High affinity T cell receptors from yeast display libraries block T cell activation by superantigens
-
Kieke MC, Sundberg E, Shusta EV, Mariuzza RA, Wittrup KD, Kranz DM. 2001. High affinity T cell receptors from yeast display libraries block T cell activation by superantigens. J. Mol. Biol. 307: 1305-1315.
-
(2001)
J. Mol. Biol.
, vol.307
, pp. 1305-1315
-
-
Kieke, M.C.1
Sundberg, E.2
Shusta, E.V.3
Mariuzza, R.A.4
Wittrup, K.D.5
Kranz, D.M.6
-
19
-
-
0031310154
-
Energy minimization of globular proteins with solvent effects included. Comparison of empirical solvation energy terms and explicit water treatment
-
Kierzek A, Zielenkiewicz P. 1997. Energy minimization of globular proteins with solvent effects included. Comparison of empirical solvation energy terms and explicit water treatment. Acta Biochim. Pol. 44: 549-556.
-
(1997)
Acta Biochim. Pol.
, vol.44
, pp. 549-556
-
-
Kierzek, A.1
Zielenkiewicz, P.2
-
20
-
-
0028559548
-
Toxic shock syndrome toxin-1 complexed with a class II major histocompatibility molecule HLA-DR1
-
Kim J, Urban RG, Strominger JL, Wiley DC. 1994. Toxic shock syndrome toxin-1 complexed with a class II major histocompatibility molecule HLA-DR1. Science 266: 1870-1874.
-
(1994)
Science
, vol.266
, pp. 1870-1874
-
-
Kim, J.1
Urban, R.G.2
Strominger, J.L.3
Wiley, D.C.4
-
21
-
-
0029881007
-
MOLMOL: A program for display and analysis of macromolecular structures
-
Koradi R, Billeter M, Thrich K. 1996. MOLMOL: a program for display and analysis of macromolecular structures. J. Mol. Graph. 14: 51-55; www.mol.biol.ethz.ch/wuthrich/software/molmol/
-
(1996)
J. Mol. Graph.
, vol.14
, pp. 51-55
-
-
Koradi, R.1
Billeter, M.2
Thrich, K.3
-
22
-
-
0031987803
-
Superantigens of Gram-positive bacteria: Structure-function analyses and their implications for biological activity
-
Kotb M. 1998. Superantigens of Gram-positive bacteria: structure-function analyses and their implications for biological activity. Curr. Opin. Microbiol. 1: 56-65.
-
(1998)
Curr. Opin. Microbiol.
, vol.1
, pp. 56-65
-
-
Kotb, M.1
-
23
-
-
0033054709
-
Understanding the mechanism of action of bacterial superantigens from a decade of research
-
Lavoie PM, Thibodeau J, Erard F, Sekaly R-P. 1999. Understanding the mechanism of action of bacterial superantigens from a decade of research. Immunol. Rev. 168: 257-269.
-
(1999)
Immunol. Rev.
, vol.168
, pp. 257-269
-
-
Lavoie, P.M.1
Thibodeau, J.2
Erard, F.3
Sekaly, R.-P.4
-
24
-
-
0035836481
-
Structure-based design of a bispecific receptor mimic that inhibits T cell responses to a superantigen
-
Lehnert NM, Allen DL, Allen BL, Catasti P, Shiflett PR, Chen M, Lehnert BE, Gupta G. 2001. Structure-based design of a bispecific receptor mimic that inhibits T cell responses to a superantigen. Biochemistry 40: 4222-4228.
-
(2001)
Biochemistry
, vol.40
, pp. 4222-4228
-
-
Lehnert, N.M.1
Allen, D.L.2
Allen, B.L.3
Catasti, P.4
Shiflett, P.R.5
Chen, M.6
Lehnert, B.E.7
Gupta, G.8
-
25
-
-
0036234708
-
Superantigens: Microbial agents that corrupt immunity
-
Llewelyn M, Cohen J. 2002. Superantigens: microbial agents that corrupt immunity. Lancet Infect. Dis. 2: 156-162.
-
(2002)
Lancet Infect. Dis.
, vol.2
, pp. 156-162
-
-
Llewelyn, M.1
Cohen, J.2
-
26
-
-
0027340203
-
The bacterial and mouse mammary tumor virus superantigens; two different, families of proteins with the same functions
-
Marrack P, Winslow GM, Choi Y, Scherer M, Pullen A, White J, Kappler JW. 1993. The bacterial and mouse mammary tumor virus superantigens; two different, families of proteins with the same functions. Immunol. Rev. 131: 79-92.
-
(1993)
Immunol. Rev.
, vol.131
, pp. 79-92
-
-
Marrack, P.1
Winslow, G.M.2
Choi, Y.3
Scherer, M.4
Pullen, A.5
White, J.6
Kappler, J.W.7
-
28
-
-
0034816706
-
Calculations of free-energy contributions to protein-RNA complex stabilization
-
Olson MA. 2001. Calculations of free-energy contributions to protein-RNA complex stabilization. Biophys. J. 81: 1841-1853.
-
(2001)
Biophys. J.
, vol.81
, pp. 1841-1853
-
-
Olson, M.A.1
-
29
-
-
0034254854
-
Microbial super-antigens: From structure to function
-
Papageorgiou AC, Acharya KR. 2000. Microbial super-antigens: from structure to function. Trends Microbiol. 8: 369-375.
-
(2000)
Trends Microbiol.
, vol.8
, pp. 369-375
-
-
Papageorgiou, A.C.1
Acharya, K.R.2
-
30
-
-
0030602908
-
The refined crystal structure of toxic shock syndrome toxin-1 at 2.07 angstrom resolution
-
Papageorgiou AC, Brehm RD, Leonidas DD, Tranter HS, Acharya KR. 1996. The refined crystal structure of toxic shock syndrome toxin-1 at 2.07 angstrom resolution. J. Mol. Biol. 260: 553-569.
-
(1996)
J. Mol. Biol.
, vol.260
, pp. 553-569
-
-
Papageorgiou, A.C.1
Brehm, R.D.2
Leonidas, D.D.3
Tranter, H.S.4
Acharya, K.R.5
-
31
-
-
0032549518
-
Crystal structure of microbial superantigen staphylococcal enterotoxin B at 1.5 Å resolution: Implications for superantigen recognition by MHC class II molecules and T-cell receptors
-
Papageorgiou AC, Tranter HS, Acharya KR. 1998. Crystal structure of microbial superantigen staphylococcal enterotoxin B at 1.5 Å resolution: implications for superantigen recognition by MHC class II molecules and T-cell receptors. J. Mol. Biol. 277: 61-79.
-
(1998)
J. Mol. Biol.
, vol.277
, pp. 61-79
-
-
Papageorgiou, A.C.1
Tranter, H.S.2
Acharya, K.R.3
-
32
-
-
0004279414
-
-
University of California: San Francisco, CA
-
Pearlman DA, Case DA, Caldwell JW, Ross WH, Cheatham TS III, Ferguson DM, Seibel GL, Chandra Singh U, Weiner PK, Kollman PA. 1995. AMBER 4.1. University of California: San Francisco, CA.
-
(1995)
AMBER 4.1
-
-
Pearlman, D.A.1
Case, D.A.2
Caldwell, J.W.3
Ross, W.H.4
Cheatham III, T.S.5
Ferguson, D.M.6
Seibel, G.L.7
Chandra Singh, U.8
Weiner, P.K.9
Kollman, P.A.10
-
33
-
-
0036467503
-
So many ways of getting in the way: Diversity in the molecular architecture of super-antigen-dependent T-cell signaling complexes
-
Sundberg E, Li Y, Mariuzza R. 2002. So many ways of getting in the way: diversity in the molecular architecture of super-antigen-dependent T-cell signaling complexes. Curr. Opin. Immunol. 14: 36-44.
-
(2002)
Curr. Opin. Immunol.
, vol.14
, pp. 36-44
-
-
Sundberg, E.1
Li, Y.2
Mariuzza, R.3
-
34
-
-
0028806156
-
Bacterial superantigens in human disease: Structure, function and diversity
-
Ulrich RG, Bavari S, Olson MA. 1995. Bacterial superantigens in human disease: structure, function and diversity. Trends Microbiol. 3: 463-468.
-
(1995)
Trends Microbiol.
, vol.3
, pp. 463-468
-
-
Ulrich, R.G.1
Bavari, S.2
Olson, M.A.3
-
35
-
-
0032211007
-
Development of engineered vaccines effective against structurally related bacterial superantigens
-
Ulrich RG, Olson MA, Bavari S. 1998. Development of engineered vaccines effective against structurally related bacterial superantigens. Vaccine 16: 1857-1864.
-
(1998)
Vaccine
, vol.16
, pp. 1857-1864
-
-
Ulrich, R.G.1
Olson, M.A.2
Bavari, S.3
-
36
-
-
0024577093
-
The V beta-specific superantigen staphylococcal enterotoxin B: Stimulation of mature T cells and clonal deletion in neonatal mice
-
White J, Herman A, Pullen AM, Kubo R, Kappler JW, Marrack P. 1989. The V beta-specific superantigen staphylococcal enterotoxin B: stimulation of mature T cells and clonal deletion in neonatal mice. Cell 56: 27-35.
-
(1989)
Cell
, vol.56
, pp. 27-35
-
-
White, J.1
Herman, A.2
Pullen, A.M.3
Kubo, R.4
Kappler, J.W.5
Marrack, P.6
-
37
-
-
0032987478
-
Membrane protein folding and stability: Physical principles
-
White SH, Wimley WC. 1999. Membrane protein folding and stability: physical principles. A. Rev. Biophys. Biomol. Struct. 28: 319-365.
-
(1999)
A. Rev. Biophys. Biomol. Struct.
, vol.28
, pp. 319-365
-
-
White, S.H.1
Wimley, W.C.2
-
38
-
-
0031552370
-
Determination of atomic desolvation energies from the structures of crystallized proteins
-
Zhang C, Vasmatzis G, Cornette JL, DeLisi C. 1997. Determination of atomic desolvation energies from the structures of crystallized proteins. J. Mol. Biol. 267: 707-726.
-
(1997)
J. Mol. Biol.
, vol.267
, pp. 707-726
-
-
Zhang, C.1
Vasmatzis, G.2
Cornette, J.L.3
DeLisi, C.4
|