Neuropogon and the phylogeny of Usnea s.l. (Parmeliaceae, Lichenized Ascomycetes)

Taxon

Volumn 53, Issue 4, 2004, Pages 925-934

  Articus, Kristina ^a  

^a UPPSALA UNIVERSITY   (Sweden)

Author keywords

Bayesian inference; Dolichousnea; Eumitria; ITS LSU; Molecular phylogeny; Neuropogon; Usnea; Usneoid; tubulin

Indexed keywords

PHYLOGENY;

ASCOMYCOTA; DOLICHOUSNEA; DOLICHOUSNEA ARTICUS; DOLICHOUSNEA DIFFRACTA; DOLICHOUSNEA LONGISSIMA; DOLICHOUSNEA TRICHODEOIDES; EUMITRIA; EUMITRIA PECTINATA; NEUROPOGON; PARMELIACEAE; USNEA;

EID: 11244258229     PISSN: 00400262     EISSN: None     Source Type: Journal    
DOI: 10.2307/4135560     Document Type: Article

References (34)

1. Akaike, H. 1973. Information theory as an extension of the maximum likelihood principle. Pp. 26-281 in: Petrov, B. N. & Csaki, F. (eds.), Second International Symposium on Information theory. Akademiai Kiado, Budapest.
2. Articus, K., Mattsson, J.-E., Tibell, L., Grube, M. & Wedin, M. 2002. Ribosomal DNA and β-tubulin data do not support the separation of the lichens Usnea florida and U. subfloridana as distinct species. Mycol. Res. 106: 412-418.
3. Du Rietz, G. E. 1926. Om släktena Evernia Ach., Letharia (Th.Fr.) Zahlbr. emend. D. R. och Usnea Ach. subgenus Neuropogon (Nees & Flot.) Jatta. Svensk Bot. Tidskr. 20: 89-93.
4. Döring, H., Clerc, P., Grube, M. & Wedin, M. 2000. Mycobiont-specific PCR primers for the amplification of nuclear ITS and LSU rDNA from lichenized ascomycetes. Lichenologist 32: 200-204.
5. Farris, J. S., Albert, V. A., Källersjö, M., Lipscomb, D. & Kluge, A. G. 1997. Parsimony jackknifing outperforms neighbor-joining. Cladistics 12: 99-124.
6. Galloway, D. J. 1983. New taxa in the New Zealand lichen flora. New Zealand J. Bot. 21: 191-200.
7. Galloway, D. J. 1985. Flora of New Zealand Lichens. P. D. Hasselberg, Government Printer, Wellington.
8. Galloway, D. J. 1992. Checklist of New Zealand Lichens. DSIR Land Resources Scientific Report, No. 26, DSIR Land Resources, Christchurch.
9. Gardes, M. & Bruns, T. D. 1993. ITS primers with enhanced specificity for basidiomycetes - application to the identification of mycorrhizae and rusts. Molec. Ecol. 2: 113-118.
10. Glass, N. L. & Donaldson, G. C. 1995. Development of primer sets designed for use with the PCR to amplify conserved genes from filamentous ascomycetes. Appl. Environm. Microbiol. 61: 1323-1330.
11. Hall, T. 2001. BioEdit. Biological Sequence Alignment Editor for Windows 95/98/NT. North Carolina State University. Internet address http://www.mbio. ncsu.edu/BioEdit/bio edit.html
12. Hawksworth, D. L., Kirk, P. M., Sutton, B. C. & Pegler, D. N. 1995. Ainsworth & Bisby's Dictionary of the Fungi, ed. 8. CAB International, Wallingford.
13. Henssen, A. & Jahns, H. M. 1974. Lichenes. Georg Thieme Verlag, Stuttgart.
14. Huelsenbeck, J. P. & Ronquist, F. 2001. MRBAYES: Bayesian inference of phylogenetic trees. Bioinformatics 17: 754-755.
15. Krog, H. 1976. Lethariella and Protousnea, two new lichen genera in the Parmeliaceae. Norweg. J. Bot. 23: 83-106.
16. Krog, H. 1982. Evolutionary trends in foliose and fruticose lichens of the Parmeliaceae. J. Hattori Bot. Lab. 52: 303-311.
17. Lamb, I. M. 1964. Antarctic lichens I. The genera Usnea, Ramalina, Himantormia, Alectoria, Cornicularia. British Antarctic Survey, Scientific Reports 38: 1-34, appendix I, II, pls. I-IX.
18. Malcolm, W. M. & Galloway, D. J. 1997. New Zealand Lichens: Checklist, Key, and Glossary. Museum of New Zealand Te Papa Tongarewa, Wellington.
19. Motyka, J. 1936-1938. Lichenum Generis Usnea Studium Monographicum. Pars Systematica, vol. 1. Leopoli.
20. Nees von Esenbeck, C. G. & von Flotow, J. 1835. Einige neue Flechtenarten. Linnaea 9: 495-502.
21. Nylander, J. A. A. 2002. MrModeltest v1.0b. Program distributed by the author. Department of Systematic Zoology, Uppsala University. http://www.ebc.uu.se/systzoo/staff/ nylander.html.
22. Ohmura, Y. 2001. Taxonomic study of the genus Usnea (lichenized Ascomycetes) in Japan and Taiwan. J. Hattori Bot. Lab. 90: 1-96.
23. Ohmura, Y. 2002. Phylogenetic evaluation of infrageneric groups of the genus Usnea based on ITS regions in rDNA. J. Hattori Bot. Lab. 91: 231-243.
24. Rogers, R. W. 1981. The Genera of Australian Lichens. St. Lucia, Queensland.
25. Ronquist, F. & Huelsenbeck, J. P. 2003. MRBAYES 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19: 1572-1574.
26. Stevens, G. N. 1999. A revision of the lichen family Usneaceae in Australia. Biblioth. Lichenol.: 1-128.
27. Swinscow, T. D. V. & Krog, H. 1974. Usnea subgenus Eumitria in East Africa. Norweg. J. Bot. 21: 165-185.
28. Swofford, D. L. 2002. PAUP*. Phylogenetic Analysis Using Parsimony (*and Other Methods). Version 4. Sinauer Associates, Sunderland, Massachusetts.
29. Tavares, I. I. 1987. The taxa of Usnea (Lichenes) described by Michaux from eastern North America. Mycotaxon 30: 39-68.
30. Tavares, I. I., Baltzo, D. E. & Wright, D. 1998. Usnea wirthii in western North America. Pp. 187-199 in: Glenn, M. G., Harris, R. C., Dirig, R. & Cole, M. S. (eds.), Lichenographia Thomsoniana: North American Lichenology in Honor of John W. Thomson. Mycotaxon Ltd., Ithaca, New York.
31. Taylor, T. 1847. New lichens, principally from the herbarium of Sir William J. Hooker. London J. Bot. 6: 148-197.
32. Walker, F. J. 1985. The lichen genus Usnea subgenus Neuropogon. Bull. Brit. Mus. (Nat. Hist.), Bot. 13: 1-130.
33. White, T. J., Bruns, T., Lee, S. & Taylor, J. 1990. Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. Pp. 31-322 in: Innis, M. A., Gelfand, D. H., Sninsky, J. J. & White, T. J. (eds.), PCR Protocols. Academic Press, San Diego.
34. Vilgalys, R. 2001. Conserved Primer Sequences for PCR Amplification and Sequencing of Nuclear Ribosomal DNA. Duke University. http://www.biology.duke. edu/ fungi/mycolab/primers.htm