Molecular systematics and radiation of western North American nymphophiline gastropods

Molecular Phylogenetics and Evolution

Volumn 34, Issue 2, 2005, Pages 284-298

  Liu, Hsiu Ping ^a   Hershler, Robert ^b  

^a UNIVERSITY OF DENVER   (United States)

^b SMITHSONIAN INSTITUTION   (United States)

Author keywords

Gastropods; Hydrobiidae; Molecular systematics; mtDNA; Pyrgulopsis; Western North America

Indexed keywords

ANIMAL; ARTICLE; GENE LINKAGE DISEQUILIBRIUM; GENETICS; MOLECULAR EVOLUTION; NORTH AMERICA; PHYLOGENY; SNAIL; STATISTICAL MODEL;

ANIMALS; EVOLUTION, MOLECULAR; LIKELIHOOD FUNCTIONS; LINKAGE DISEQUILIBRIUM; NORTH AMERICA; PHYLOGENY; SNAILS;

FLORIDOBIA; GASTROPODA; HYDROBIIDAE; NYMPHOPHILUS; PYRGULOPSIS;

EID: 11144344495     PISSN: 10557903     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.ympev.2004.09.013     Document Type: Article

References (81)

1. R.C. Belcher The geomorphic evolution of the Rio Grande Baylor Geol. Stud. Bull. 29 1975 1 64
2. S.S. Berry A new Pyrgulopsis from Oregon Nautilus 60 1947 76 78
3. A. Bucklin Use of formalin-preserved samples for molecular analysis Newsl. Crustacean Mol. Technol. 2 1992 3
4. J.B. Burch North American Freshwater Snails 1989 Malacological Publications Hamburg, MI
5. R. Call, and H.A. Pilsbry On Pyrgulopsis, a new genus of rissoid mollusk, with descriptions of two new forms Proc. Davenport Acad. Sci. 5 1886 9 14
6. R.V. Chamberlin, and E. Berry Mollusks of the Pliocene deposits at Collinston Utah. Nautilus 47 1933 25 29
7. Christiansen, R.L., Yeats, R.S., 1992. Post-Laramide geology of the U.S. Cordilleran region. In: Burchfiel, B.C., Lipman, P.W., Zoback, M.L. (Eds.), The Cordilleran Orogen: Conterminous U.S. Geol. Soc. Am., Boulder, pp. 261-406
8. G.M. Davis, and M. Mazurkiewicz Systematics of Cincinnatia winkleyi Proc. Acad. Nat. Sci. Philadelphia 137 1985 28 47
9. J.E. Deacon, and W.L. Minckley Desert fishes G.W. Brown Jr. Desert Biology 1974 Academic Press New York 385 488
10. J.S. Farris, M. Källersjö, A.G. Kluge, and C. Bult Testing significance of incongruence Cladistics 10 1994 315 319
11. J. Felsenstein Evolutionary trees from DNA sequences: a maximum likelihood approach J. Mol. Evol. 17 1981 368 376
12. J. Felsenstein Confidence limits on phylogenies: an approach using the bootstrap Evolution 39 1985 783 791
13. M. Fishbein, C. Hibsch-Jetter, D.E. Soltis, and L. Hufford Phylogeny of Saxifragales (Angiosperms, Eudicots): analysis of a rapid, ancient radiation Syst. Biol. 50 2001 817 847
14. O. Folmer, M. Black, W. Hoeh, R. Lutz, and R. Vrijenhoek DNA primers for amplification of mitochondrial cytochrome c oxidase subunit I from diverse metazoan invertebrates Mol. Mar. Biol. Biotech. 3 1994 294 299
15. N. Goldman, J.P. Anderson, and A.G. Rodrigo Likelihood-based tests of topologies in phylogenetics Syst. Biol. 49 2000 652 670
16. W.O. Gregg, and D.W. Taylor Fontelicella (Prosobranchia: Hydrobiidae), a new genus of West American freshwater snails Malacologia 3 1965 103 110
17. R.L. Gresens Regional significance of a late Eocene/early Oligocene erosion surface exposed in central Washington State Abstr. Geol. Soc. Am. 10 3 1978 107
18. R.L. Gresens Extension of the Telluride erosion surface to Washington State, and its regional and tectonic significance Tectonophysics 79 1981 145 164
19. M. Hasegawa, H. Kishino, and T. Yano Dating of the human-ape splitting by a molecular clock of mitochondrial DNA J. Mol. Evol. 22 1985 160 174
20. R. Hershler Systematic revision of the Hydrobiidae (Gastropoda: Rissoacea) of the Cuatro Cienegas Basin, Coahuila, Mexico Malacologia 26 1985 31 123
21. R. Hershler Pyrgulopsis bruneauensis, a new springsnail (Gastropoda: Hydrobiidae) from the Snake River Plain, southern Idaho Proc. Biol. Soc. Wash. 103 1990 803 814
22. R. Hershler A review of the North American freshwater snail genus Pyrgulopsis (Hydrobiidae) Smithson. Contrib. Zool. 554 1994 1 115
23. R. Hershler New freshwater snails of the genus Pyrgulopsis (Rissooidea: Hydrobiidae) from California Veliger 38 1995 343 373
24. R. Hershler A systematic review of the hydrobiid snails (Gastropoda: Rissooidea) of the Great Basin, western United States. Part I. Genus Pyrgulopsis Veliger 41 1998 1 132
25. R. Hershler, and D.L. Gustafson First record for springsnails (Mollusca: Hydrobiidae: Pyrgulopsis) from the northern Rocky Mountains Proc. Biol. Soc. Wash. 114 2001 297 308
26. R. Hershler, and J.J. Landye Arizona Hydrobiidae Smithson. Contrib. Zool. 459 1988 1 63
27. R. Hershler, and H.-P. Liu Taxonomic reappraisal of species assigned to the North American freshwater gastropod subgenus Natricola (Rissooidea: Hydrobiidae) Veliger 47 2004 66 81
28. R. Hershler, and H.-P. Liu A molecular phylogeny of aquatic gastropods provides a new perspective on biogeographic history of the Snake River region Mol. Phylogenet. Evol. 32 2004 927 937
29. R. Hershler, and W.L. Pratt A new Pyrgulopsis (Gastropoda: Hydrobiidae) from southeastern California, with a model for historical development of the Death Valley hydrographic system Proc. Biol. Soc. Wash. 103 1990 279 299
30. R. Hershler, and D.W. Sada Springsnails (Gastropoda: Hydrobiidae) of Ash Meadows, Amargosa Basin, California-Nevada Proc. Biol. Soc. Wash. 100 1987 776 843
31. R. Hershler, and D.W. Sada A new species of hydrobiid snail of the genus Pyrgulopsis from northwestern Nevada Veliger 43 2000 367 375
32. Hershler, R., Sada, D.W., 2002. Biogeography of Great Basin aquatic snails of the genus Pyrgulopsis. In: Hershler, R., Madsen, D.B., Currey, D.R. (Eds.), Great Basin Aquatic Systems History. Smithson. Contrib. Earth Sci., 33, pp. 255-276
33. R. Hershler, and F.G. Thompson North American Hydrobiidae (Gastropoda: Rissoacea): redescription and systematics relationships of Tryonia Stimpson, 1865 and Pyrgulopsis Call and Pilsbry, 1886 Nautilus 101 1987 25 32
34. R. Hershler, and F.G. Thompson Redescription of Paludina integra Say, 1821, type species of the genus Cincinnatia (Gastropoda: Hydrobiidae) J. Moll. Stud. 62 1996 33 55
35. R. Hershler, H.-P. Liu, and F.G. Thompson Phylogenetic relationships of North American nymphophiline gastropods based on mitochondrial DNA sequences Zool. Scripta 32 2003 357 366
36. R. Hershler, T.J. Frest, H.-P. Liu, and E.J. Johannes Rissooidean snails from the Pit River Basin, California Veliger 46 2003 275 304
37. J.P. Huelsenbeck, and F. Ronquiest MRBAYES: Bayesian inference of phylogeny Bioinformatics 17 2001 754 755
38. C.R. Hurt Genetic divergence, population structure and historical demography of rare springsnails (Pyrgulopsis) in the lower Colorado River basin Mol. Ecol. 13 2004 1173 1187
39. H. Kishino, and M. Hasegawa Evaluation of the maximum likelihood estimate of the evolutionary tree topologies from DNA sequence data, and the branching order in Hominoidea J. Mol. Evol. 29 1989 170 179
40. H.-P. Liu, R. Hershler, and F.G. Thompson Phylogenetic relationships of the Cochliopinae (Rissooidea: Hydrobiidae): an enigmatic group of aquatic gastropods Mol. Phylogenet. Evol. 21 2001 17 25
41. H.-P. Liu, R. Hershler, and K. Clift Mitochondrial DNA sequences reveal extensive cryptic diversity within a western American springsnail Mol. Ecol. 12 2003 2771 2782
42. W.P. Maddison, and D.R. Maddison MacClade, version 3.0 1992 Sinauer Associates Sunderland, MA
43. S.T. Malcomber Phylogeny of Gaertnera Lam. (Rubiaceae) based on multiple DNA markers: evidence of a rapid radiation in a widespread, morphologically diverse genus Evolution 56 2002 42 57
44. Malde, H.E., 1991. Quaternary geology and structural history of the Snake River Plain, Idaho and Oregon. In: Morrison, R.B. (Ed.), The Geology of North America. vol. K-2, Quaternary Nonglacial Geology: Conterminous US. Geol. Soc. Am., Boulder, pp. 251-281
45. K.E. von Martens Land and freshwater Mollusca F.G. Godman O. Salvin Biologia Centrali-Americana 1890-1901 R.H. Porter London 1 706
46. H.-J. Megens, C.H.M. van Moorsel, W.H. Piel, N.E. Pierce, and R. de Jong Tempo of speciation in a butterfly genus from the Southeast Asian tropics, inferred from mitochondrial and nuclear DNA sequence data Mol. Phylogenet. Evol. 31 2004 1181 1196
47. C.L. Morrison, R. Ríos, and J.E. Duffy Phylogenetic evidence for an ancient rapid radiation of Caribbean sponge-dwelling snapping shrimps (Synalpheus) Mol. Phylogenet. Evol. 30 2004 563 581
48. Nevada Natural Heritage Program, 2000. Scorecard 2000: highest priority conservation sites. Available from: 〈http://heritage.nv.gov/reports/ scor2000.pdf(6/9/04)〉
49. New Mexico Department of Game and Fish, 2000. Threatened and endangered species of New Mexico. Biennial review and recommendations. Available from: 〈http://www.wildlife.state.nm.us/PageMill_Images/NonGame/ %20T%26E%20BR%20Booklet.pdf(6/9/04)〉
50. Palumbi, S., Martin, A., Romano, S., McMillan, W.O., Stice, L., Grabowski, G., 1991. The simple fool's guide to PCR. Privately distributed, Honolulu
51. D. Posada, and K.A. Crandall Modeltest: testing the model of DNA substitution Bioinformatics 14 1998 817 818
52. A.R. Potochnik, and P.E. Damon Tectonic and geomorphic implications of post-Laramide erosion Abstr. Geol. Soc. Am. 18 5 1986 403
53. E.M. Prager, and A.C. Wilson Ancient origin of lactalbumin from lysozyme: Analysis of DNA and amino acid sequences J. Mol. Evol. 27 1988 326 335
54. L. Rüber, J.L. Van Tassell, and R. Zardoya Rapid speciation and ecological divergence in the American seven-spined gobies (Gobiidae, Gobiosomatini) inferred from a molecular phylogeny Evolution 57 2003 1584 1598
55. N. Saitou, and M. Nei The neighbor-joining method: a new method for reconstructing phylogenetic trees Mol. Biol. Evol. 4 1987 406 425
56. State of Utah Division of Wildlife Resources, 2003. Utah sensitive species list. Available from: 〈http://dwrcdc.nr.utah.gov/ucdc/ViewReports/ SSL&Appendices121803.pdf(6/9/04)〉
57. R.E.C. Stearns Description of a new hydrobiinoid gasteropod from the mountain lakes of the Sierra Nevada, with remarks on allied species and the physiographical features of said region Proc. Acad. Nat. Sci. Philadelphia 35 1883 171 176
58. R.E.C. Stearns Report on the land and fresh-water shells collected in California and Nevada by the Death Valley Expedition, including a few additional species obtained by Dr. C. Hart Merriam and assistants in parts of the southwestern United States North Am. Fauna 7 1893 269 283
59. Stewart, J.H., 1998. Regional characteristics, tilt domains, and extensional history of the late Cenozoic Basin and Range province, western North America. In: Faulds, J.E., Stewart, J.H. (Eds.), Accommodation Zones and Transfer Zones: The Regional Segmentation of the Basin and Range Province. Geol. Soc. Am. Spec. Pap. 323, pp. 47-74
60. D.L. Swofford PAUP*: Phylogenetic Analysis Using Parsimony (and other methods). Version 4.0b10 2002 Sinauer Associates Sunderland, MA
61. K. Tamura, and M. Nei Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees Mol. Biol. Evol. 10 1993 512 526
62. D.W. Taylor Distribution of the freshwater clam Pisidium ultramontanum; a zoogeographic inquiry Am. J. Sci. 258-A 1960 325 334
63. D.W. Taylor Historical analysis of distribution of western American freshwater molluscs Am. Zoologist 4 1965 436 437 [abstract]
64. D.W. Taylor Summary of North American Blancan nonmarine mollusks Malacologia 4 1966 1 172
65. D.W. Taylor A remarkable snail fauna from Coahuila, México Veliger 9 1966 152 228
66. D.W. Taylor Index and bibliography of late Cenozoic freshwater Mollusca of western North America Univ. Michigan Pap. Paleontol. 10 1975 1 384
67. Taylor, D.W., 1985. Evolution of freshwater drainages and molluscs in western North America. In: Smiley, C.J., Leviton, A.J. (Eds.), Late Cenozoic History of the Pacific Northwest, Interdisciplinary Studies on the Clarkia Fossil Beds of Northern Idaho. Am. Assoc. Adv. Sci., San Francisco, pp. 265-321
68. D.W. Taylor Fresh-water molluscs from New Mexico and vicinity New Mexico Bur. Mines Miner. Resour. Bull. 116 1987 1 50
69. Taylor, D.W., Bright, R.C., 1987. Drainage history of the Bonneville Basin. In: Kopp, R.S., Cohenour, R.E. (Eds.), Cenozoic Geology of Western Utah. Sites for Precious Metal and Hydrocarbon Accumulations. Utah Geol. Assoc. Publ. 16, pp. 239-256
70. F.G. Thompson The Aquatic Snails of the Family Hydrobiidae of Peninsular Florida 1968 University of Florida Press Gainesville
71. F.G. Thompson Some hydrobiid snails from Georgia and Florida Q. J. Fla. Acad. Sci. 32 1969 241 265
72. F.G. Thompson The hydrobiid snail genus Marstonia Fla. State Mus. Biol. Sci. Bull. 21 1977 113 158
73. F.G. Thompson The systematic relationships of the hydrobioid snail genus Nymphophilis Taylor, 1966, and the status of the subfamily Nymphophilinae Malacol. Rev. 12 1979 41 49
74. F.G. Thompson North American freshwater snail genera of the hydrobiid subfamily Lithoglyphinae Malacologia 25 1984 109 141
75. F.G. Thompson A new freshwater snail from the Coosa River, Alabama (Gastropoda: Prosobranchia: Hydrobiidae) Proc. Biol. Soc. Wash. 108 1995 502 507
76. F.G. Thompson Three new freshwater snails of the genus Cincinnatia from Peninsular Florida (Prosobranchia, Hydrobiidae) Walkerana 11 2000 55 73
77. F.G. Thompson, and R. Hershler Two genera of North American freshwater snails: Marstonia Baker, 1926, resurrected to generic status, and Floridobia, new genus (Prosobranchia: Hydrobiidae: Nymphophilinae) Veliger 45 2003 269 271
78. G.J. Vermeij Biogeography and Adaptation. Patterns of Marine Life 1978 Harvard University Press Cambridge (MA)
79. G.J. Vermeij, and A.P. Covich Coevolution of freshwater gastropods and their predators Am. Naturalist 112 1978 833 843
80. Walker, B., 1908. Pomatiopsis robusta, n. sp. Nautilus 21, 97
81. Young, R.A., 2004. Abstracts for a working conference on the Cenozoic geologic evolution of the Colorado River system and the erosional chronology of the Grand Canyon region. Available from: 〈http://wwwflag.wr.usgs.gov/ GCSymposium/abstract/index.pdf(6/14/04)〉