메뉴 건너뛰기




Volumn 11, Issue 2, 2004, Pages 145-152

Virtual-SAGE: A new approach to EST data analysis

Author keywords

Alternative splicing; High throughput EST analysis; Software; Transcript 3 end variation; Virtual SAGE

Indexed keywords

COMPLEMENTARY DNA; CONTIG; ENDONUCLEASE; GLUTATHIONE TRANSFERASE; LIPID TRANSFER PROTEIN; METHYLTRANSFERASE; NUCLEOSIDE DIPHOSPHATE KINASE; POLYADENYLIC ACID; PROFILIN; RIBOSOME PROTEIN; RNA BINDING PROTEIN;

EID: 11144333773     PISSN: 13402838     EISSN: None     Source Type: Journal    
DOI: 10.1093/dnares/11.2.145     Document Type: Article
Times cited : (3)

References (23)
  • 3
    • 0033853089 scopus 로고    scopus 로고
    • SAGEmap: A public gene expression resource
    • Lash, A. E., Tolstoshev, C. M., Wagner, L., et al. 2000, SAGEmap: a public gene expression resource. Genome Res., 10, 1051-1060.
    • (2000) Genome Res. , vol.10 , pp. 1051-1060
    • Lash, A.E.1    Tolstoshev, C.M.2    Wagner, L.3
  • 5
    • 0036000101 scopus 로고    scopus 로고
    • SAGE profiling and demonstration of differential gene expression along the axial developmental gradient of lignifying xylem in loblolly pine (Pinus taedd)
    • Lorenz, W. W. and Dean, J. F. D. 2002, SAGE profiling and demonstration of differential gene expression along the axial developmental gradient of lignifying xylem in loblolly pine (Pinus taedd). Tree Physiol., 22, 301-310.
    • (2002) Tree Physiol. , vol.22 , pp. 301-310
    • Lorenz, W.W.1    Dean, J.F.D.2
  • 6
    • 0036267752 scopus 로고    scopus 로고
    • Gene expression profiling of human GV oocytes: An analysis of a profile obtained by serial analysis of gene expression (SAGE)
    • Stanton, J. L., Bascand, M., Fisher, L., Quinn, M., Macgregor, A., and Green, D. P. 2002, Gene expression profiling of human GV oocytes: an analysis of a profile obtained by serial analysis of gene expression (SAGE). J. Reprod. Immunol., 53, 193-201.
    • (2002) J. Reprod. Immunol. , vol.53 , pp. 193-201
    • Stanton, J.L.1    Bascand, M.2    Fisher, L.3    Quinn, M.4    Macgregor, A.5    Green, D.P.6
  • 7
    • 0032849859 scopus 로고    scopus 로고
    • CAPS: A DNA sequence assembly program
    • Huang, X. and Madan, A. 1999, CAPS: A DNA sequence assembly program. Genome Res., 9, 868-877.
    • (1999) Genome Res. , vol.9 , pp. 868-877
    • Huang, X.1    Madan, A.2
  • 8
    • 0033598805 scopus 로고    scopus 로고
    • In silico detection of control signals: mRNA 3′-end-processing sequences in diverse species
    • Graber, J. H., Cantor, C. R., Mohr, S. C., and Smith, T. F. 1999, In silico detection of control signals: mRNA 3′-end-processing sequences in diverse species. Proc. Natl. Acad. Sci. U.S.A., 96, 14055-14060.
    • (1999) Proc. Natl. Acad. Sci. U.S.A. , vol.96 , pp. 14055-14060
    • Graber, J.H.1    Cantor, C.R.2    Mohr, S.C.3    Smith, T.F.4
  • 9
    • 0036779335 scopus 로고    scopus 로고
    • Regulation of translational initiation in plants
    • Kawaguchi, R. and Bailey-Serres, J. 2002, Regulation of translational initiation in plants. Cure. Opin. Plant Biol., 5, 460-465.
    • (2002) Cure. Opin. Plant Biol. , vol.5 , pp. 460-465
    • Kawaguchi, R.1    Bailey-Serres, J.2
  • 10
    • 0037308625 scopus 로고    scopus 로고
    • Translational control by the 3′-UTR: The ends specify the means
    • Mazumder, B., Seshadri, V., and Fox, P. L. 2003, Translational control by the 3′-UTR: the ends specify the means. Trends Biochem. Sci., 28, 91-98.
    • (2003) Trends Biochem. Sci. , vol.28 , pp. 91-98
    • Mazumder, B.1    Seshadri, V.2    Fox, P.L.3
  • 11
    • 0030573995 scopus 로고    scopus 로고
    • The effect of the length of the 3′-untranslated region on expression in plants
    • Tanguay, R. L. and Gallie, D. R. 1996a, The effect of the length of the 3′-untranslated region on expression in plants. FEBS Lett., 394, 285-288.
    • (1996) FEBS Lett. , vol.394 , pp. 285-288
    • Tanguay, R.L.1    Gallie, D.R.2
  • 12
    • 0029655282 scopus 로고    scopus 로고
    • Translational efficiency is regulated by the length of the 3′ untranslated region
    • Tanguay, R. L. and Gallic, D. R. 1996b, Translational efficiency is regulated by the length of the 3′ untranslated region. Mol. Cell Biol., 16, 146-156.
    • (1996) Mol. Cell Biol. , vol.16 , pp. 146-156
    • Tanguay, R.L.1    Gallic, D.R.2
  • 14
    • 0036006857 scopus 로고    scopus 로고
    • ABA, ethylene and the control of shoot and root growth under water stress
    • Sharp, R. E. and LeNoble, M. E. 2002, ABA, ethylene and the control of shoot and root growth under water stress. J. Exp. Bot., 53, 33-37.
    • (2002) J. Exp. Bot. , vol.53 , pp. 33-37
    • Sharp, R.E.1    LeNoble, M.E.2
  • 15
    • 0027260941 scopus 로고
    • cDNA structure, expression and nucleic acid-binding properties of three RNA-binding proteins in tobacco: Occurrence of tissue-specific alternative splicing
    • Hirose, T., Sugita, M., and Sugiura, M. 1993, cDNA structure, expression and nucleic acid-binding properties of three RNA-binding proteins in tobacco: occurrence of tissue-specific alternative splicing. Nucleic Acids Res., 21, 3981-3987.
    • (1993) Nucleic Acids Res. , vol.21 , pp. 3981-3987
    • Hirose, T.1    Sugita, M.2    Sugiura, M.3
  • 16
    • 0037266853 scopus 로고    scopus 로고
    • The circadian clock regulated RNA-binding protein AtGRP7 autoregulates its expression by influencing alternative splicing of its own pre-mRNA
    • Staiger, D., Zecca, L., Wieczorek Kirk, D. A., Apel, K., and Eckstein, L. 2003, The circadian clock regulated RNA-binding protein AtGRP7 autoregulates its expression by influencing alternative splicing of its own pre-mRNA. Plant J., 33, 361-371.
    • (2003) Plant J. , vol.33 , pp. 361-371
    • Staiger, D.1    Zecca, L.2    Wieczorek Kirk, D.A.3    Apel, K.4    Eckstein, L.5
  • 17
    • 0026661353 scopus 로고
    • Different mechanisms generating sequence variability are revealed in distinct regions of the hydroxyproline-rich glycoprotein gene from maize and related species
    • Raz, R., Jose, M., Moya, A., Martinez-Izquierdo, J. A., and Puigdomenech, P. 1993, Different mechanisms generating sequence variability are revealed in distinct regions of the hydroxyproline-rich glycoprotein gene from maize and related species. Mol. Gen. Genet., 233, 252-259.
    • (1993) Mol. Gen. Genet. , vol.233 , pp. 252-259
    • Raz, R.1    Jose, M.2    Moya, A.3    Martinez-Izquierdo, J.A.4    Puigdomenech, P.5
  • 18
    • 0028534696 scopus 로고
    • Environmental stress-mediated differential 3′ end formation of chloroplast RNA-binding protein transcripts
    • Breiteneder, H., Michalowski, C. B., and Bohnert, H. J. 1994, Environmental stress-mediated differential 3′ end formation of chloroplast RNA-binding protein transcripts. Plant Mol. Biol., 26, 833-849.
    • (1994) Plant Mol. Biol. , vol.26 , pp. 833-849
    • Breiteneder, H.1    Michalowski, C.B.2    Bohnert, H.J.3
  • 19
    • 0028351948 scopus 로고
    • The contribution of AAUAAA and the upstream element UUUGUA to the efficiency of mRNA 3′-end formation in plants
    • Rothnie, H. M., Reid, J., Hohn, T. 1994, The contribution of AAUAAA and the upstream element UUUGUA to the efficiency of mRNA 3′-end formation in plants. EMBO J., 13, 2200-2210.
    • (1994) EMBO J. , vol.13 , pp. 2200-2210
    • Rothnie, H.M.1    Reid, J.2    Hohn, T.3
  • 20
    • 0029360431 scopus 로고
    • Alternative splicing results in two different transcripts for H-protein of the glycine cleavage system in the C4 species Flaveria trinervia
    • Kopriva, S., Cossu, R., and Bauwe, H. 1995, Alternative splicing results in two different transcripts for H-protein of the glycine cleavage system in the C4 species Flaveria trinervia. Plant J., 8, 435-441.
    • (1995) Plant J. , vol.8 , pp. 435-441
    • Kopriva, S.1    Cossu, R.2    Bauwe, H.3
  • 21
    • 0033117331 scopus 로고    scopus 로고
    • An allele of the ripening-specific 1-aminocyclopropane-1-carboxylic acid synthase gene (ACS1) in apple fruit with a long storage life
    • Sunako, T., Sakuraba, W., Senda, M., Akada, S., Ishikawa, R., Niizeki, M., and Harada, T. 1999, An allele of the ripening-specific 1-aminocyclopropane- 1-carboxylic acid synthase gene (ACS1) in apple fruit with a long storage life. Plant Physiol, 119, 1297-1304.
    • (1999) Plant Physiol. , vol.119 , pp. 1297-1304
    • Sunako, T.1    Sakuraba, W.2    Senda, M.3    Akada, S.4    Ishikawa, R.5    Niizeki, M.6    Harada, T.7
  • 22
    • 0036895733 scopus 로고    scopus 로고
    • Characterization of two putative ethylene receptor genes expressed during peach fruit development and abscission
    • Rasori, A., Ruperti, B., Bonghi, C., Tonutti, P., and Ramina, A. 2002, Characterization of two putative ethylene receptor genes expressed during peach fruit development and abscission. J. Exp. Bot., 53, 2333-2339.
    • (2002) J. Exp. Bot. , vol.53 , pp. 2333-2339
    • Rasori, A.1    Ruperti, B.2    Bonghi, C.3    Tonutti, P.4    Ramina, A.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.