Development of microsatellite markers in bunching onion (Allium fistulosum L.)

Breeding Science

Volumn 54, Issue 4, 2004, Pages 361-365

  Song, Yeon Sang ^a,b   Suwabe, Keita ^a   Wako, Tadayuki ^a   Ohara, Takayoshi ^a   Nunome, Tsukasa ^a   Kojima, Akio ^a  

^a NATIONAL INSTITUTE OF VEGETABLE AND TEA SCIENCE   (Japan)

^b National Institute of Crop Science   (South Korea)

Author keywords

Allium fistulosum; Bunching onion; Dinucleotide motif; Microsatellite

Indexed keywords

ALLIUM; ALLIUM CEPA; ALLIUM FISTULOSUM; ALLIUM SATIVUM; TRANSPOSONS;

EID: 11144322853     PISSN: 13447610     EISSN: None     Source Type: Journal    
DOI: 10.1270/jsbbs.54.361     Document Type: Article

References (26)

1. Anderson, J.A., G.A. Churchill, J.E. Autrique, S.D. Tanksley and M.E. Sorrells (1993) Optimizing parental selection for genetic linkage maps. Genome 36: 181-186.
2. Cai, H.-W., N. Yuyama, H. Tamaki and A. Yoshizawa (2003) Isolation and characterization of simple sequence repeat markers in the hexaploid forage grass timothy (Phleum pratense L.). Theor. Appl. Genet. 107: 1337-1349.
3. Fischer, D. and K. Bachmann (2000) Onion microsatellites for germplasm analysis and their use in assessing intra- and interspecific relatedness within the subgenus Rhizirideum. Theor. Appl. Genet. 101: 153-164.
4. Haishima, M. and H. Ikehashi (1992) Identification of isozyme genes in native varieties of Japanese bunching onion (Allium fistulosum L.). Jpn. J. Breed. 42: 497-505.
5. Haishima, M., J. Kato and H. Ikehashi (1993) Isozyme polymorphism in native varieties of Japanese bunching onion (Allium fistulosum L.). Jpn. J. Breed. 43: 537-547.
6. Jones, C.J., K.J. Edwards, S. Castaglione, M.O. Winfield, F. Sala et al. (1997) Reproducibility testing of RAPD, AFLP and SSR markers in plants by a network of European laboratories. Mol. Breed. 3:381-390.
7. Kirk, J.T.O., H. Rees and G. Evans (1970) Base composition of nuclear DNA within the genus Allium. Heredity 25: 507-512.
8. Lagercrantz, U., H. Ellegren and L. Andersson (1993) The abundance of various polymorphic microsatellite motifs differs between plants and vertebrates. Nucleic Acids Res. 21: 1111-1115.
9. Levinson, G. and G.A. Gutman (1987) Slipped-strand mispairing: a major mechanism for DNA sequence evolution. Mol. Biol. Evol. 4: 203-221.
10. Lian, C., T. Hogetsu, N. Matsushita, A. Guerin-Laguette, K. Suzuki and A. Yamada (2003) Development of microsatellite markers from an ectomycorrhizal fungus, Tricholoma matsutake, by an ISSR-suppression-PCR method. Mycorrhiza 13: 27-31.
11. MacHugh, D.E., M.D. Shriver, R.T. Loftus, P. Cunninham and D.G. Bradley (1997) Microsatellite DNA variation and the evolution, domestication and phylogeography of tauring and zebu cattle (Bos Taurus and Bos indicus). Genetics 146: 1071-1086.
12. MAFF, Japan (2000) Marketing and consumption statistics. http:// www.maff.go.jp/esokuhou/index.html.
13. Mangum, P.D. and E.B. Peffley (1994) Inheritance of ADH, 6-PGDH, PGM, and SKDH in Allium fistulosum L. J. Amer. Soc. Hort. Sci. 119:335-338.
14. Moue, T. and T. Uehara (1985) Inheritance of cytoplasmic male sterility in Allium fistulosum L. (Welsh onion). J. Jpn. Soci. Hort. Sci. 53:432-437 (in Japanese).
15. Plieske, J. and D. Struss (2001) Microsatellite markers for genome analysis in Brassica. I. Development in Brassica napus and abundance in Brassicaceae species. Theor. Appl. Genet. 102: 689-694.
16. Powell, W., M. Morgante, C. Andre, M. Hanafey, J. Vogel, S. Tingey and A. Rafalski (1996) The comparison of RFLP, RAPD, AFLP and SSR (microsatellite) markers for germplasm analysis. Mol. Breed. 2: 225-238.
17. Rozen, S. and H.J. Skaletsky (2000) Primer3 on the WWW for general users and for biologist programmers. In "Bioinformatics Methods and Protocols: Methods in Molecular Biology" Krawetz, S. and S. Misener (eds.), Humana Press, Totowa, NJ. p. 365-386.
18. Smith, J.S.C., E.C.L. Chin, H. Shu, O.S. Smith, S.J. Wall, M.L. Senior, S.E. Mitchell, S. Kresovich and J. Ziegle (1997) An evaluation of the utility of SSR loci as molecular markers in maize (Zea mays L.): comparisons with data from RFLPS and pedigree. Theor. Appl. Genet. 95: 163-173.
19. Stack, S.M. and D.E. Comings (1979) The chromosomes and DNA of Allium cepa. Chromosoma 70: 161-181.
20. Struss, D. and J. Plieske (1998) The use of microsatellite markers for detection of genetic diversity in barley populations. Theor. Appl. Genet. 97:308-315.
21. Suwabe, K., H. Iketani, T. Nunome, T. Kage and M. Hirai (2002) Isolation and characterization of microsatellites in Brassica rapa L. Theor. Appl. Genet. 104: 1092-1098.
22. Szewc-McFadden, A.K., S. Kresovich, S.M. Bliek, S.E. Mitchell and J.R. McFerson (1996) Identification of polymorphic, conserved simple sequence repeats (SSRs) in cultivated Brassica species. Theor. Appl. Genet. 93: 534-538.
23. Taramino, G. and S. Tingey (1996) Simple sequence repeats for germplasm analysis and mapping in maize. Genome 39: 277-287.
24. Uzunova, M.I. and W. Ecke (1999) Abundance, polymorphism and genetic mapping of microsatellites in oilseed rape (Brassica napus L.). Plant Breed. 118: 323-326.
25. Weber, J.L. and P.E. May (1989) Abundant class of human DNA polymorphisms which can be typed using the polymerase chain reaction. Am. J. Human Genet. 44: 388-396.
26. Wu, K.S. and S.D. Tanksley (1993) Abundance, polymorphism and genetic mapping of microsatellites in rice. Mol. Gen. Genet. 241: 225-235.