-
2
-
-
0019457194
-
Purification and properties of a copper-containing nitrite reductase from a denitrifying bacterium, Alcaligenes faecalis
-
Kakutani, T., Watanabe, H., Arima, K., and Beppu, T. (1981) Purification and properties of a copper-containing nitrite reductase from a denitrifying bacterium, Alcaligenes faecalis, J. Biochem. 89, 453-461.
-
(1981)
J. Biochem.
, vol.89
, pp. 453-461
-
-
Kakutani, T.1
Watanabe, H.2
Arima, K.3
Beppu, T.4
-
3
-
-
0027437592
-
Purification and characterisation of the dissimilatory nitrite reductase from Alcaligenes xylosoxidans subsp. xylosoxidans (NCIMB 11015): Evidence for the presence of both type 1 and type 2 copper centres
-
Abraham, Z. H., Lowe, D. J., and Smith, B. E. (1993) Purification and characterisation of the dissimilatory nitrite reductase from Alcaligenes xylosoxidans subsp. xylosoxidans (NCIMB 11015): Evidence for the presence of both type 1 and type 2 copper centres, Biochem. J. 295, 587-593.
-
(1993)
Biochem. J.
, vol.295
, pp. 587-593
-
-
Abraham, Z.H.1
Lowe, D.J.2
Smith, B.E.3
-
4
-
-
0021478113
-
Characterization of nitrite reductase from a denitrifier. Alcaligenes sp. NCIB 11015. A novel copper protein
-
Masuko, M., Iwasaki, H., Sakurai, T., Suzuki, S., and Nakahara, A. (1984) Characterization of nitrite reductase from a denitrifier, Alcaligenes sp. NCIB 11015. A novel copper protein, J. Biochem. 96, 447-454.
-
(1984)
J. Biochem.
, vol.96
, pp. 447-454
-
-
Masuko, M.1
Iwasaki, H.2
Sakurai, T.3
Suzuki, S.4
Nakahara, A.5
-
5
-
-
0015327555
-
A nitrite reductase from Achromobacter cycloclastes
-
Iwasaki, H., and Matsubara, T. (1972) A nitrite reductase from Achromobacter cycloclastes, J. Biochem. 71, 645-652.
-
(1972)
J. Biochem.
, vol.71
, pp. 645-652
-
-
Iwasaki, H.1
Matsubara, T.2
-
6
-
-
0023656565
-
Type 1, blue copper proteins constitute a respiratory nitrite-reducing system in Pseudomonas aureofaciens
-
Zumft, W. G., Gotzmann, D. J., and Kroneck, P. M. (1987) Type 1, blue copper proteins constitute a respiratory nitrite-reducing system in Pseudomonas aureofaciens, Eur. J. Biochem. 168, 301-307.
-
(1987)
Eur. J. Biochem.
, vol.168
, pp. 301-307
-
-
Zumft, W.G.1
Gotzmann, D.J.2
Kroneck, P.M.3
-
7
-
-
0026353602
-
The 2.3 Å X-ray structure of nitrite reductase from Achromobacter cycloclastes
-
Godden, J. W., Turley, S., Teller, D. C., Adman, E. T., Liu, M. Y., Payne, W. J., and LeGall, J. (1991) The 2.3 Å X-ray structure of nitrite reductase from Achromobacter cycloclastes, Science 253, 438-442.
-
(1991)
Science
, vol.253
, pp. 438-442
-
-
Godden, J.W.1
Turley, S.2
Teller, D.C.3
Adman, E.T.4
Liu, M.Y.5
Payne, W.J.6
LeGall, J.7
-
9
-
-
0028298314
-
X-ray structure and site directed mutagenesis of a nitrite reductase from Alcaligenes faecalis-S6-Roles of 2 copper atoms in nitrite reduction
-
Kukimoto, M., Nishiyama, M., Murphy, M. E. P., Turley, S., Adman, E. T., Horinouchi, S., and Beppu, T. (1994) X-ray structure and site directed mutagenesis of a nitrite reductase from Alcaligenes faecalis-S6-Roles of 2 copper atoms in nitrite reduction, Biochemistry 33, 5246-5252.
-
(1994)
Biochemistry
, vol.33
, pp. 5246-5252
-
-
Kukimoto, M.1
Nishiyama, M.2
Murphy, M.E.P.3
Turley, S.4
Adman, E.T.5
Horinouchi, S.6
Beppu, T.7
-
10
-
-
0029164551
-
Structure of Alcaligenes faecalis nitrite reductase and a copper site mutant, M150E, that contains zinc
-
Murphy, M. E. P., Turley, S., Kukimoto, M., Nishiyama, M., Horinouchi, S., Sasaki, H., Tanokura, M., and Adman, E. T. (1995) Structure of Alcaligenes faecalis nitrite reductase and a copper site mutant, M150E, that contains zinc, Biochemistry 34, 12107-12117.
-
(1995)
Biochemistry
, vol.34
, pp. 12107-12117
-
-
Murphy, M.E.P.1
Turley, S.2
Kukimoto, M.3
Nishiyama, M.4
Horinouchi, S.5
Sasaki, H.6
Tanokura, M.7
Adman, E.T.8
-
11
-
-
0030811144
-
Structures of a blue-copper nitrite reductase and its substrate bound complex
-
Dodd, F. E., Hasnain, S. S., Abraham, Z. H. L., Eady, R. R., and Smith, B. E. (1997) Structures of a blue-copper nitrite reductase and its substrate bound complex, Acta Crystallogr., Sect. D 53, 406-418.
-
(1997)
Acta Crystallogr., Sect. D
, vol.53
, pp. 406-418
-
-
Dodd, F.E.1
Hasnain, S.S.2
Abraham, Z.H.L.3
Eady, R.R.4
Smith, B.E.5
-
12
-
-
0032544483
-
X-ray structure of a blue-copper nitrite reductase in two crystal forms. The nature of the copper sites, mode of substrate binding, and recognition by redox partner
-
Dodd, F. E., van Beeumen, J., Eady, R. R., and Hasnain, S. S. (1998) X-ray structure of a blue-copper nitrite reductase in two crystal forms. The nature of the copper sites, mode of substrate binding, and recognition by redox partner, J. Mol. Biol. 282, 369-382.
-
(1998)
J. Mol. Biol.
, vol.282
, pp. 369-382
-
-
Dodd, F.E.1
Van Beeumen, J.2
Eady, R.R.3
Hasnain, S.S.4
-
13
-
-
0037466312
-
Atomic resolution structures of native copper nitrite reductase from Alcaligenes xylosoxidans and the active site mutant Asp92Glu
-
Ellis, M. J., Dodd, F. E., Sawers, G., Eady, R. R., and Hasnain, S. S. (2003) Atomic resolution structures of native copper nitrite reductase from Alcaligenes xylosoxidans and the active site mutant Asp92Glu, J. Mol. Biol. 328, 429-438.
-
(2003)
J. Mol. Biol.
, vol.328
, pp. 429-438
-
-
Ellis, M.J.1
Dodd, F.E.2
Sawers, G.3
Eady, R.R.4
Hasnain, S.S.5
-
14
-
-
0033574613
-
Structural and kinetic evidence for an ordered mechanism of nitrite reductase
-
Strange, R. W., Murphy, L. M., Dodd, F. E., Abraham, Z. H. L., Eady, R. R., Smith, B. E., and Hasnain, S. S. (1999) Structural and kinetic evidence for an ordered mechanism of nitrite reductase. J. Mol. Biol. 287, 1001-1009.
-
(1999)
J. Mol. Biol.
, vol.287
, pp. 1001-1009
-
-
Strange, R.W.1
Murphy, L.M.2
Dodd, F.E.3
Abraham, Z.H.L.4
Eady, R.R.5
Smith, B.E.6
Hasnain, S.S.7
-
15
-
-
0036301145
-
Electron donation between copper containing nitrite reductases and cupredoxins: The nature of protein-protein interaction in complex formation
-
Murphy, L. M., Dodd, F. E., Yousafzai, F. K., Eady, R. R., and Hasnain, S. S. (2002) Electron donation between copper containing nitrite reductases and cupredoxins: The nature of protein-protein interaction in complex formation, J. Mol. Biol. 315, 859-871.
-
(2002)
J. Mol. Biol.
, vol.315
, pp. 859-871
-
-
Murphy, L.M.1
Dodd, F.E.2
Yousafzai, F.K.3
Eady, R.R.4
Hasnain, S.S.5
-
16
-
-
0028267847
-
EPR and electron nuclear double resonance (ENDOR) studies show nitrite binding to the type 2 copper centres of the dissimilatory nitrite reductase of Alcaligenes xylosoxidans
-
Howes, B. D., Abraham, Z. H. L., Lowe, D. J., Brüser, T., Eady, R. R., and Smith, B. E. (1994) EPR and electron nuclear double resonance (ENDOR) studies show nitrite binding to the type 2 copper centres of the dissimilatory nitrite reductase of Alcaligenes xylosoxidans, Biochemistry 33, 3171-3177.
-
(1994)
Biochemistry
, vol.33
, pp. 3171-3177
-
-
Howes, B.D.1
Abraham, Z.H.L.2
Lowe, D.J.3
Brüser, T.4
Eady, R.R.5
Smith, B.E.6
-
17
-
-
0028964698
-
The substrate binding site in Cu nitrite reductase and its similarity to Zn carbonic anhydrase
-
Strange, R. W., Dodd, F. E., Abraham, Z. H. L., Grossmann, J. G., Brüser, T., Eady, R. R., Smith, B. E., and Hasnain, S. S. (1995) The substrate binding site in Cu nitrite reductase and its similarity to Zn carbonic anhydrase, Nat. Struct. Biol. 2, 287-292.
-
(1995)
Nat. Struct. Biol.
, vol.2
, pp. 287-292
-
-
Strange, R.W.1
Dodd, F.E.2
Abraham, Z.H.L.3
Grossmann, J.G.4
Brüser, T.5
Eady, R.R.6
Smith, B.E.7
Hasnain, S.S.8
-
18
-
-
0017681196
-
DNA sequencing with chain terminating inhibitors
-
Sanger, F., Nicklen, S., and Coulson, A. R. (1977) DNA sequencing with chain terminating inhibitors, Proc. Nat. Acad. Sci. U.S.A. 74, 5463-5467.
-
(1977)
Proc. Nat. Acad. Sci. U.S.A.
, vol.74
, pp. 5463-5467
-
-
Sanger, F.1
Nicklen, S.2
Coulson, A.R.3
-
19
-
-
0344573109
-
Catalytic and spectroscopic analysis of blue copper-containing nitrite reductase mutants altered in the environment of the type 2 copper centre: Implications for substrate interaction
-
Prudencio, M., Eady, R. R., and Sawers, G. (1999) Catalytic and spectroscopic analysis of blue copper-containing nitrite reductase mutants altered in the environment of the type 2 copper centre: Implications for substrate interaction, J. Bacteriol. 181, 2323-2329.
-
(1999)
J. Bacteriol.
, vol.181
, pp. 2323-2329
-
-
Prudencio, M.1
Eady, R.R.2
Sawers, G.3
-
20
-
-
0018110755
-
Isolation and characterization of nitrate reductase from Escherichia coli
-
MacGregor, C. H. (1978) Isolation and characterization of nitrate reductase from Escherichia coli, Methods Enzymol. 53, 347-355.
-
(1978)
Methods Enzymol.
, vol.53
, pp. 347-355
-
-
MacGregor, C.H.1
-
21
-
-
0031059866
-
Processing of X-ray diffraction data collected in oscillation mode
-
Otwinowski, Z., and Minor, W. (1997) Processing of X-ray diffraction data collected in oscillation mode, Methods Enzymol. 276, 307-326.
-
(1997)
Methods Enzymol.
, vol.276
, pp. 307-326
-
-
Otwinowski, Z.1
Minor, W.2
-
22
-
-
84920325457
-
AMoRe: An automated package for molecular replacement
-
Navaza, J. (1994) AMoRe: An automated package for molecular replacement, Acta Crystallogr., Sect. A 50, 157-163.
-
(1994)
Acta Crystallogr., Sect. A
, vol.50
, pp. 157-163
-
-
Navaza, J.1
-
23
-
-
0030924992
-
Refinement of macromolecular structures by the maximum likelihood method
-
Murshudov, G. N., Vagin, A. A., and Dodson, E. J. (1997) Refinement of macromolecular structures by the maximum likelihood method, Acta Crystallogr., Sect. D 53, 240-255.
-
(1997)
Acta Crystallogr., Sect. D
, vol.53
, pp. 240-255
-
-
Murshudov, G.N.1
Vagin, A.A.2
Dodson, E.J.3
-
24
-
-
84889120137
-
Improved methods for building protein models in electron density maps and the location of errors in these models
-
Jones, T. A., Zou, J. Y., Cowan, S. W., and Kjeldgaard, M. (1991) Improved methods for building protein models in electron density maps and the location of errors in these models, Acta Crystallogr., Sect. A 47, 110-119.
-
(1991)
Acta Crystallogr., Sect. A
, vol.47
, pp. 110-119
-
-
Jones, T.A.1
Zou, J.Y.2
Cowan, S.W.3
Kjeldgaard, M.4
-
25
-
-
0026597444
-
Free R value: A novel statistical quantity for assessing the accuracy of crystal structures
-
Brünger, A. T. (1992) Free R value: A novel statistical quantity for assessing the accuracy of crystal structures, Nature 355, 472-475.
-
(1992)
Nature
, vol.355
, pp. 472-475
-
-
Brünger, A.T.1
-
26
-
-
0000127585
-
Automated refinement of protein models
-
Lamzin, V. S., and Wilson, K. S. (1993) Automated refinement of protein models, Acta Crystallogr., Sect. D 49, 129-147.
-
(1993)
Acta Crystallogr., Sect. D
, vol.49
, pp. 129-147
-
-
Lamzin, V.S.1
Wilson, K.S.2
-
27
-
-
0033229975
-
Experimental assessment of differences between related protein crystal structures
-
Kleywegt, G. J. (1999) Experimental assessment of differences between related protein crystal structures, Acta Crystallogr., Sect. D 55, 1878-1857.
-
(1999)
Acta Crystallogr., Sect. D
, vol.55
, pp. 1878-1857
-
-
Kleywegt, G.J.1
-
28
-
-
0036303516
-
Biochemical and crystallographic studies of the Met 144Ala. Asp92Asn, and His254Phe mutants of the nitrite reductase from Alcaligenes xylosoxidans provide insight into the enzyme mechanism
-
Ellis, M. J., Prudencio, M., Dodd, F. E., Strange, R. W., Sawers, G., Eady, R. R., and Hasnain, S. S. (2002) Biochemical and crystallographic studies of the Met 144Ala, Asp92Asn, and His254Phe mutants of the nitrite reductase from Alcaligenes xylosoxidans provide insight into the enzyme mechanism, J. Mol. Biol. 316, 51-64.
-
(2002)
J. Mol. Biol.
, vol.316
, pp. 51-64
-
-
Ellis, M.J.1
Prudencio, M.2
Dodd, F.E.3
Strange, R.W.4
Sawers, G.5
Eady, R.R.6
Hasnain, S.S.7
-
29
-
-
0034901755
-
X-ray structure of a blue copper nitrite reductase at high pH and in copper-free form at 1.9 Å resolution
-
Ellis, M. J., Dodd, F. E., Strange, R. W., Prudencio, M., Sawers, G., Eady, R. R., and Hasnain, S. S. (2001) X-ray structure of a blue copper nitrite reductase at high pH and in copper-free form at 1.9 Å resolution, Acta Crystallogr., Sect. D 57, 1110-1118.
-
(2001)
Acta Crystallogr., Sect. D
, vol.57
, pp. 1110-1118
-
-
Ellis, M.J.1
Dodd, F.E.2
Strange, R.W.3
Prudencio, M.4
Sawers, G.5
Eady, R.R.6
Hasnain, S.S.7
-
30
-
-
20644449681
-
Electron transfer between tryptophan and tyrosine: Theoretical calculation of electron-transfer matrix element for intramolecular hole transfer
-
Xiang-Yain, Li (2000) Electron transfer between tryptophan and tyrosine: Theoretical calculation of electron-transfer matrix element for intramolecular hole transfer, J. Comp. Chem. 22, 565-579.
-
(2000)
J. Comp. Chem.
, vol.22
, pp. 565-579
-
-
Li, X.-Y.1
-
31
-
-
0004293491
-
-
(DeLano W., Ed.) DeLano Scientific, San Carlos, CA
-
DeLano, W. L. (2002) The Pymol User's Manual (DeLano, W., Ed.) DeLano Scientific, San Carlos, CA.
-
(2002)
The Pymol User's Manual
-
-
DeLano, W.L.1
-
32
-
-
0026244229
-
MOLSCRIPT: A program to produce both detailed and schematic plots of protein structures
-
Kraulis, P. J. (1991) MOLSCRIPT: A program to produce both detailed and schematic plots of protein structures, J. Appl. Crystallogr. 24, 946-950.
-
(1991)
J. Appl. Crystallogr.
, vol.24
, pp. 946-950
-
-
Kraulis, P.J.1
-
33
-
-
0030729838
-
An extensively modified version of MOLSCRIPT that includes greatly enhanced coloring capabilities
-
Esnouf, R. M. (1997) An extensively modified version of MOLSCRIPT that includes greatly enhanced coloring capabilities, J. Mol. Graphics Modell. 15, 112-134.
-
(1997)
J. Mol. Graphics Modell.
, vol.15
, pp. 112-134
-
-
Esnouf, R.M.1
-
34
-
-
0030815133
-
Raster3D: Photorealistic molecular graphics
-
Merritt, E. A., and Bacon, D. J. (1997) Raster3D: Photorealistic molecular graphics, Methods Enzymol. 277, 505-524.
-
(1997)
Methods Enzymol.
, vol.277
, pp. 505-524
-
-
Merritt, E.A.1
Bacon, D.J.2
|