Identification of an evolutionary conserved SURF-6 domain in a family of nucleolar proteins extending from human to yeast

Biochemical and Biophysical Research Communications

Volumn 327, Issue 1, 2005, Pages 143-149

  Polzikov, Mikhail ^a,b   Zatsepina, Olga ^a   Magoulas, Charalambos ^b  

^a SHEMYAKIN OVCHINNIKOV INSTITUTE OF BIOORGANIC CHEMISTRY   (Russian Federation)

^b QUEEN MARY UNIVERSITY OF LONDON   (United Kingdom)

Author keywords

Nucleolar localization signals; Nucleolus; Ribosomal biogenesis; rrp14; SURF 6; Yeast cell polarity; ykl082c

Indexed keywords

PROTEIN; PROTEIN SURF 6; UNCLASSIFIED DRUG;

ARTICLE; BIOGENESIS; CARBOXY TERMINAL SEQUENCE; CONTROLLED STUDY; DATA BASE; EUKARYOTE; GENE DELETION; GENE SEQUENCE; GENE TARGETING; HUMAN; HUMAN CELL; MOLECULAR EVOLUTION; NONHUMAN; NUCLEOLUS; NUCLEOTIDE SEQUENCE; POLARIZATION; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN FAMILY; PROTEIN PROTEIN INTERACTION; SACCHAROMYCES CEREVISIAE; YEAST;

AMINO ACID SEQUENCE; ANIMALS; CELL NUCLEOLUS; CONSERVED SEQUENCE; EVOLUTION, MOLECULAR; HUMANS; MOLECULAR SEQUENCE DATA; NUCLEAR LOCALIZATION SIGNALS; NUCLEAR PROTEINS; PROTEIN STRUCTURE, TERTIARY; PROTEIN TRANSPORT; SACCHAROMYCES CEREVISIAE; SEQUENCE ALIGNMENT;

EUKARYOTA; MAMMALIA; SACCHAROMYCES CEREVISIAE;

EID: 11144222941     PISSN: 0006291X     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.bbrc.2004.11.148     Document Type: Article

References (37)

1. T. Melese, and Z. Xue The nucleolus: an organelle formed by the act of building a ribosome Curr. Opin. Cell Biol. 7 1995 319 324
2. M.O. Olson, K. Hingorani, and A. Szebeni Conventional and nonconventional roles of the nucleolus Int. Rev. Cytol. 219 2002 199 266
3. J.B. Bachant, and S.J. Elledge Mitotic treasures in the nucleolus Nature 398 1999 757 758
4. M. Carmo-Fonseca, L. Mendes-Soares, and I. Campos To be or not to be in the nucleolus Nat. Cell Biol. 2 2000 E107 E112
5. C.L. Sansam, K.S. Wells, and R.B. Emeson Modulation of RNA editing by functional nucleolar sequestration of ADAR2 Proc. Natl. Acad. Sci. USA 100 2003 14018 14023
6. M.T. Teixeira, K. Forstemann, S.M. Gasser, and J. Lingner Intracellular trafficking of yeast telomerase components EMBO Rep. 3 2002 652 659
7. R. Bernardi, and P.P. Pandolfi The nucleolus: at the stem of immortality Nat. Med. 9 2003 24 25
8. J.S. Andersen, C.E. Lyon, A.H. Fox, A.K. Leung, Y.W. Lam, H. Steen, M. Mann, and A.I. Lamond Directed proteomic analysis of the human nucleolus Curr. Biol. 12 2002 1 11
9. A.K. Leung, J.S. Andersen, M. Mann, and A.I. Lamond Bioinformatic analysis of the nucleolus Biochem. J. 376 2003 553 569
10. A. Scherl, Y. Coute, C. Deon, A. Calle, K. Kindbeiter, J.C. Sanchez, A. Greco, D. Hochstrasser, and J.J. Diaz Functional proteomic analysis of human nucleolus Mol. Biol. Cell. 13 2002 4100 4109
11. A.K. Leung, and A.I. Lamond The dynamics of the nucleolus Crit. Rev. Eukaryot. Gene Expr. 13 2003 39 54
12. C. Magoulas, and M. Fried The Surf-6 gene of the mouse surfeit locus encodes a novel nucleolar protein DNA Cell Biol. 15 1996 305 316
13. C. Magoulas, O.V. Zatsepina, P.W. Jordan, E.G. Jordan, and M. Fried The SURF-6 protein is a component of the nucleolar matrix and has a high binding capacity for nucleic acids in vitro Eur. J. Cell Biol. 75 1998 174 183
14. C. Magoulas, and M. Fried Isolation and genomic analysis of the human surf-6 gene: a member of the Surfeit locus Gene 243 2000 115 123
15. A. Bateman, L. Coin, R. Durbin, R.D. Finn, V. Hollich, S. Griffiths-Jones, A. Khanna, M. Marshall, S. Moxon, E.L. Sonnhammer, D.J. Studholme, C. Yeats, and S.R. Eddy The Pfam protein families database Nucleic Acids Res. 32 Database issue 2004 D138 D141
16. E. Staub, P. Fiziev, A. Rosenthal, and B. Hinzmann Insights into the evolution of the nucleolus by an analysis of its protein domain repertoire Bioessays 26 2004 567 581
17. B.L. Drees, B. Sundin, E. Brazeau, J.P. Caviston, G.C. Chen, W. Guo, K.G. Kozminski, M.W. Lau, J.J. Moskow, A. Tong, L.R. Schenkman, A. McKenzie III, P. Brennwald, M. Longtine, E. Bi, C. Chan, P. Novick, C. Boone, J.R. Pringle, T.N. Davis, S. Fields, and D.G. Drubin A protein interaction map for cell polarity development J. Cell Biol. 154 2001 549 571
18. P. Uetz, L. Giot, G. Cagney, T.A. Mansfield, R.S. Judson, J.R. Knight, D. Lockshon, V. Narayan, M. Srinivasan, P. Pochart, A. Qureshi-Emili, Y. Li, B. Godwin, D. Conover, T. Kalbfleisch, G. Vijayadamodar, M. Yang, M. Johnston, S. Fields, and J.M. Rothberg A comprehensive analysis of protein-protein interactions in Saccharomyces cerevisiae Nature 403 2000 623 627
19. A. Fatica, A.D. Cronshaw, M. Dlakic, and D. Tollervey Ssf1p prevents premature processing of an early pre-60S ribosomal particle Mol. Cell 9 2002 341 351
20. E.W. Horsey, J. Jakovljevic, T.D. Miles, P. Harnpicharnchai, and J.L. Woolford Jr. Role of the yeast Rrp1 protein in the dynamics of pre-ribosome maturation RNA 10 2004 813 827
21. C. Shirai, T. Takai, M. Nariai, C. Horigome, and K. Mizuta Ebp2p, the yeast homolog of Epstein-Barr virus nuclear antigen 1-binding protein 2, interacts with factors of both the 60 S and the 40 s ribosomal subunit assembly J. Biol. Chem. 279 2004 25353 25358
22. K.B. Nicholas, H.B. Nicholas Jr., and D.W. Deerfield GeneDoc: analysis and visualization of genetic variation EMBNEW. NEWS 4 1997 14 15
23. D.T. Jones Protein secondary structure prediction based on position-specific scoring matrices J. Mol. Biol. 292 1999 195 202
24. C.J. Sigrist, L. Cerutti, N. Hulo, A. Gattiker, L. Falquet, M. Pagni, A. Bairoch, and P. Bucher PROSITE: a documented database using patterns and profiles as motif descriptors Brief. Bioinform. 3 2002 265 274
25. N.M. Luscombe, and J.M. Thornton Protein-DNA interactions: amino acid conservation and the effects of mutations on binding specificity J. Mol. Biol. 320 2002 991 1009
26. A.G. Murzin, S.E. Brenner, T. Hubbard, and C. Chothia SCOP: a structural classification of proteins database for the investigation of sequences and structures J. Mol. Biol. 247 1995 536 540
27. M. Hatanaka Discovery of the nucleolar targeting signal Bioessays 12 1990 143 148
28. J.D. Weber, M.L. Kuo, B. Bothner, E.L. DiGiammarino, R.W. Kriwacki, M.F. Roussel, and C.J. Sherr Cooperative signals governing ARF-mdm2 interaction and nucleolar localization of the complex Mol. Cell. Biol. 20 2000 2517 2528
29. K.T. Etheridge, S.S. Banik, B.N. Armbruster, Y. Zhu, R.M. Terns, M.P. Terns, and C.M. Counter The nucleolar localization domain of the catalytic subunit of human telomerase J. Biol. Chem. 277 2002 24764 24770
30. M.S. Schmidt-Zachmann, and E.A. Nigg Protein localization to the nucleolus: a search for targeting domains in nucleolin J. Cell Sci. 105 Pt 3 1993 799 806
31. Y. Nishimura, T. Ohkubo, Y. Furuichi, and H. Umekawa Tryptophans 286 and 288 in the C-terminal region of protein B23.1 are important for its nucleolar localization Biosci. Biotechnol. Biochem. 66 2002 2239 2242
32. S. Snaar, K. Wiesmeijer, A.G. Jochemsen, H.J. Tanke, and R.W. Dirks Mutational analysis of fibrillarin and its mobility in living human cells J. Cell Biol. 151 2000 653 662
33. E.C. LaCasse, and Y.A. Lefebvre Nuclear localization signals overlap DNA- or RNA-binding domains in nucleic acid-binding proteins Nucleic Acids Res. 23 1995 1647 1656
34. A.C. Messias, and M. Sattler Structural basis of single-stranded RNA recognition Acc. Chem. Res. 37 2004 279 287
35. J.M. Perez-Canadillas, and G. Varani Recent advances in RNA-protein recognition Curr. Opin. Struct. Biol. 11 2001 53 58
36. E.A. Winzeler, D.D. Shoemaker, A. Astromoff, H. Liang, K. Anderson, B. Andre, R. Bangham, R. Benito, J.D. Boeke, H. Bussey, A.M. Chu, C. Connelly, K. Davis, F. Dietrich, S.W. Dow, M. El Bakkoury, F. Foury, S.H. Friend, E. Gentalen, G. Giaever, J.H. Hegemann, T. Jones, M. Laub, H. Liao, and R.W. Davis Functional characterization of the S. cerevisiae genome by gene deletion and parallel analysis Science 285 1999 901 906
37. W.T. Peng, M.D. Robinson, S. Mnaimneh, N.J. Krogan, G. Cagney, Q. Morris, A.P. Davierwala, J. Grigull, X. Yang, W. Zhang, N. Mitsakakis, O.W. Ryan, N. Datta, V. Jojic, C. Pal, V. Canadien, D. Richards, B. Beattie, L.F. Wu, S.J. Altschuler, S. Roweis, B.J. Frey, A. Emili, J.F. Greenblatt, and T.R. Hughes A panoramic view of yeast noncoding RNA processing Cell 113 2003 919 933