Dynamics of double-stranded RNA segments in a Helicobasidium mompa clone from a tulip tree plantation

FEMS Microbiology Ecology

Volumn 51, Issue 2, 2005, Pages 293-301

  Ikeda, Ken Ichi ^a   Nakamura, Hitoshi ^a   Arakawa, Masao ^a   Toshiyuki Koiwa, ^b   Matsumoto, Naoyuki ^a  

^a NATIONAL INSTITUTE FOR AGRO ENVIRONMENTAL SCIENCES   (Japan)

^b 560 11Yahaba   (Japan)

Author keywords

Double stranded (ds) RNA; Helicobasidium mompa; Mycelial compatibility group (MCG); Mycovirus; Transmission

Indexed keywords

DOUBLE STRANDED RNA; FUNGAL RNA;

RNA; ROOT ROT;

ARTICLE; CORRELATION ANALYSIS; ELECTROPHORESIS; FUNGAL VIRULENCE; FUNGUS; FUNGUS GROWTH; HELICOBASIDIUM MOMPA; HYBRIDIZATION; MYCELIUM; NONHUMAN; PRIORITY JOURNAL; TULIP;

AGRICULTURE; BASIDIOMYCOTA; LIRIODENDRON; PLANT DISEASES; RNA, DOUBLE-STRANDED; RNA, FUNGAL; VIRULENCE;

FUNGI; HELICOBASIDIUM MOMPA; HELICOBASIDIUM PURPUREUM; MYCOVIRUS; TULIPA; VIOLA (ANGIOSPERM);

EID: 11044237896     PISSN: 01686496     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.femsec.2004.09.011     Document Type: Article

References (48)

1. K. Ito Studies on Murasaki-monpa disease caused by Helicobasidium mompa Tanaka Bull. Gov. Forest Exp. Station 43 1949 1 126
2. N. Matsumoto Biological control of root diseases with dsRNA based on population structure of pathogens Jpn. Agric. Res. Quart. 32 1998 31 35
3. H. Katsumata, T. Ogata, and N. Matsumoto Population structure of Helicobasidium mompa in apple orchards in Fukushima Ann. Phytopathol. Soc. Jpn. 62 1996 490 491
4. A.D.M. Rayner The phytopathological significance of mycelial individualism Annu. Rev. Phytopathol. 29 1991 305 323
5. C.G. Shaw, and L.F. Roth Persistence and distribution of a clone of Armillaria mellea in a ponderosa pine forest Phytopathology 66 1976 1210 1213
6. M.L. Smith, J.N. Bruhn, and J.B. Anderson The fungus Armillaria bulbosa is among the largest and oldest living organisms Nature 356 1992 428 431
7. S.A. Ghabrial Effects of fungal viruses on their hosts Annu. Rev. Phytopathol. 18 1980 441 461
8. D.L. Nuss Biological control of chestnut blight: an example of virus-mediated attenuation of fungal pathogenesis Microbiol. Rev. 56 1992 561 576
9. G.H. Choi, and D.L. Nuss Hypovirulence of chestnut blight fungus conferred by an infectious viral cDNA Science 257 1992 800 803
10. H.J. Rogers, and K.W. Buck Transmission of double-stranded RNA and a disease factor in Ophiostoma ulmi Plant Pathol. 35 1986 277 287
11. S. Kanematsu, M. Arakawa, Y. Oikawa, M. Onoue, H. Osaki, H. Nakamura, K. Ikeda, Y. Kuga-Uetake, H. Nitta, A. Sasaki, K. Suzaki, K. Yoshida, and N. Matsumoto A reovirus causes hypovirulence of Rosellinia necatrix Phytopathology 94 2004 561 568
12. B.I. Hillman, S. Supyani, H. Kondo, and N. Suzuki A reovirus of the fungus Cryphonectria parasitica that is infectious as particles and related to the Coltivirus genus of animal pathogens J. Virol. 78 2004 892 898
13. K. Ikeda, H. Nakamura, and N. Matsumoto Hypovirulent strain of the violet root rot fungus Helicobasidium mompa J. Gen. Plant Pathol. 69 2003 385 390
14. Buck, K.W. (1986) An over view In: Fungal Virology (Buck, K.W., Ed.), pp. 1-84 and 221-236. CRC Press, Boca Rayton
15. M.J. Dickinson, C.R. Wellings, and A. Pryor Variation in the double-stranded RNA phenotype between and within different rust species Can. J. Bot. 68 1989 599 604
16. A. Finkler, Y. Koltin, I. Barash, B. Sneh, and D. Pozniak Isolation of a virus from virulent strains of Rhizoctonia solani J. Gen. Virol. 66 1985 1221 1232
17. K. Ihrmark, H. Johannesson, E. Stenstrom, and J. Stenlid Transmission of double-stranded RNA in Heterobasidion annosum Fung. Genet. Biol. 36 2002 147 154
18. Y.C. Liu, and M.G. Milgroom Correlation between hypovirus transmission and the number of vegetative incompatibility (vic) genes different among isolates from a natural population of Cryphonectria parasitica Phytopathology 86 1996 79 86
19. D.K. Lakshman, and S.M. Tavantzis Spontaneous appearance of genetically distinct double-stranded RNA elements in Rhizoctonia solani Phytopathology 84 1994 633 639
20. P. Compel, I. Papp, M. Bibo, C. Fekete, and L. Hornok Genetic interrelationships and genome organization of double-stranded RNA elements of Fusarium poae Virus Genes 18 1998 49 56
21. H. Osaki, K. Nomura, N. Matsumoto, and Y. Ohtsu Characterisation of double-stranded RNA elements in the violet root rot fungus Helicobasidium mompa Mycol. Res. 108 2004 635 640
22. M. Bissegger, D. Rigling, and U. Heiniger Population structure and disease development of Cryphonectria parasitica in European chestnut forests in the presence of natural hypovirulence Phytopathology 87 1997 50 59
23. K. Ikeda, H. Nakamura, M. Arakawa, and N. Matsumoto Diversity and vertical transmission of double-stranded RNA elements in root rot pathogens of trees, Helicobasidium mompa and Rosellinia necatrix Mycol. Res. 108 2004 626 634
24. H. Nakamura, Y. Uetake, M. Arakawa, I. Okabe, and N. Matsumoto An improved method for isolating violet root rot fungus, Helicobasidium mompa, from basidiocarps J. Gen. Plant Pathol. 67 2001 37 40
25. M. Arakawa, H. Nakamura, Y. Uetake, and N. Matsumoto Presence and distribution of double-stranded RNA elements in the white root rot fungus Rosellinia necatrix Mycoscience 43 2002 21 26
26. H. Nakayashiki, K. Kiyotomi, Y. Tosa, and S. Mayama Transposition of the retrotransposon MAGGY in heterologous species of filamentous fungi Genetics 153 1999 693 703
27. S.A. Bulat, M. Lübeck, I.A. Alekhina, D.F. Jensen, I.M.B. Knudsen, and P.S. Lübeck Identification of a universally primed-PCR-derived sequence-characterized amplified region marker for an antagonistic strain of Clonostachys rosea and development of a strain-specific PCR detection assay Appl. Environ. Microbiol. 66 2000 4758 4763
28. K. Ikeda, H. Nakamura, and N. Matsumoto Mycelial incompatibility operative in pairings between single basidiospore isolates of Helicobasidium mompa Mycol. Res. 107 2003 847 853
29. Y. Uetake, H. Nakamura, M. Arakawa, I. Okabe, and N. Matsumoto A root box method to estimate virulence of Helicobasidium mompa using carrots and its comparison with the conventional method using apple stocks J. Gen. Plant Pathol. 67 2001 175 181
30. K. Yukita, and T. Akahira A method to inoculate the pathogen of violet root rot, Helicobasidium mompa into the apple rootstock, Malus prunifolia Jpn. J. Phytopathol. 66 2000 269 270
31. Y. Uetake, H. Nakamura, K. Ikeda, M. Arakawa, and N. Matsumoto Helicobasidium mompa isolates from sweet potato in continuous monoculture fields J. Gen. Plant Pathol. 69 2003 42 44
32. S. Hiremath, B. L'Hostis, S.A. Ghabrial, and R.E. Rhoads Terminal structure of hypovirulence-associated dsRNAs in the chestnut blight fungus Endothia parasitica Nucleic Acids Res. 14 1986 9877 9896
33. J. Tartaglia, C.P. Paul, D.W. Fulbright, and D.L. Nuss Structural properties of double-stranded RNAs associated with biological control of chestnut blight fungus Proc. Natl. Acad. Sci. USA 83 1986 9109 9113
34. J.A. Dodds Association of type 1 viral-like dsRNA with club-shaped particles in hypovirulent strains of Endothia parasitica Virology 107 1980 1 12
35. K.J. Morten, and R.G.T. Hicks Changes in double-stranded RNA profiles in Agaricus bisporus during subculture FEMS Microbiol. Lett. 91 1992 159 164
36. R. Shapira, G.H. Choi, B.I. Hillman, and D.L. Nuss The contribution of defective RNAs to the complexity of viral-encoded double-stranded RNA populations present in hypovirulent strains of the chestnut blight fungus Cryphonectria parasitica EMBO J. 10 1991 741 746
37. K. Nomura, H. Osaki, T. Iwanami, N. Matsumoto, and Y. Ohtsu Cloning and characterization of a Totivirus double-stranded RNA from the plant pathogenic fungus, Helicobasidium mompa Tanaka Virus Genes 26 2003 219 226
38. H. Osaki, K. Nomura, T. Iwanami, S. Kanematsu, I. Okabe, N. Matsumoto, A. Sasaki, and Y. Ohtsu Detection of a double-stranded RNA virus from a strain of the violet root rot fungus Helicobasidium mompa Tanaka Virus Genes 25 2002 139 145
39. U. Heiniger, and D. Rigling Biological control of chestnut blight in Europe Annu. Rev. Phytopathol. 32 1994 581 599
40. R. Nannelli, T. Turchetti, and G. Maresi Corticolous mites (acari) as potential vectors of Cryphonectria parasitica (Murr.) Barr hypovirulent strains Int. J. Acarol. 24 1998 237 244
41. J.S. Russin, L. Shain, and G.L. Nordin Insects as carriers of virulent and cytoplasmic hypovirulent isolates of the chestnut blight fungus J. Econ. Entomol. 77 1984 838 846
42. P.J. Shipton Monoculture and soilborne plant pathogens Annu. Rev. Phytopathol. 15 1977 387 407
43. T. Araki Soil conditions and the violet and white root rot diseases of fruit trees Bull. Natl. Inst. Agric. Sci. (Jpn.) C-21 1967 1 109
44. R.J. Cook, L.S. Thomashow, D.M. Weller, D. Fujimoto, M. Mazzola, G. Bangera, and D.S. Kim Molecular mechanisms of defense by rhizobacteria against root disease Proc. Natl. Acad. Sci. USA 92 1995 4197 4201
45. D.M. Weller, J.M. Raaijmakers, B.B. Gardener, and L.S. Thomashow Microbial populations responsible for specific soil suppressiveness to plant pathogens Annu. Rev. Phytopathol. 40 2002 309 348
46. S.J. Schrag, and P. Wiener Emerging infectious disease: what are the relative roles of ecology and evolution? Trends Ecol. Evol. 10 1995 319 324
47. B. Toma, and L. Andral Epidemiology of fox rabies Adv. Virus Res. 21 1977 1 36
48. K. Tarutani, K. Nagasaki, and M. Yamaguchi Viral impacts on total abundance and clonal composition of the harmful bloom-forming phytoplankton Heterosigma akashiwo Appl. Environ. Microbiol. 66 2000 4916 4920