Elucidation of correspondence between swine chromosome 4 and human chromosome 1 by assigning 27 genes to the ImpRH map, and development of microsatellites in the proximity of 14 genes

Cytogenetic and Genome Research

Volumn 101, Issue 1, 2003, Pages 84-89

  Hiraiwa, H ^a,b,c   Sawazaki, T ^b   Suzuki, K ^b   Fujishima Kanaya, N ^b   Toki, D ^b   Ito, Y ^c   Uenishi, H ^c   Hayashi, T ^c   Awata, T ^c   Yasue, H ^c  

^a NEW ENERGY AND INDUSTRIAL TECHNOLOGY DEVELOPMENT ORGANIZATION   (Japan)

^b STAFF Institute   (Japan)

^c NATIONAL INSTITUTE OF AGROBIOLOGICAL SCIENCES   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

MICROSATELLITE DNA;

ANIMAL; ANIMAL CELL; ARTICLE; BACTERIAL ARTIFICIAL CHROMOSOME; CENTROMERE; CHROMOSOME; CHROMOSOME 1; CHROMOSOME 4; CHROMOSOME ANALYSIS; CHROMOSOME ARM; CHROMOSOME MAP; CHROMOSOME REARRANGEMENT; COMPARATIVE STUDY; EVOLUTION; GENE; GENE ABCD3; GENE ADORA3; GENE CCT3; GENE CD5L; GENE DDR2; GENE EAT2; GENE EXTL2; GENE FCER1G; GENE GBP1; GENE GBP2; GENE GCLM; GENE GFI1; GENE IGSF2; GENE KCNA3; GENE KCND3; GENE LAMB3; GENE LIBRARY; GENE LMNA; GENE LOCATION; GENE MAPPING; GENE NOTCH2; GENE NRAS; GENE PEA15; GENE PTFGRN; GENE PTGFR; GENE S100A10; GENE SHC1; GENE SSR2; GENE SYCP1; GENE WNT2B; GENETIC LINKAGE; GENETICS; HUMAN; HUMAN CELL; METHODOLOGY; MICROSATELLITE MARKER; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; RADIATION HYBRID MAPPING; SWINE; SYNTENY; TELOMERE;

ANIMALS; CHROMOSOME MAPPING; CHROMOSOMES, ARTIFICIAL, BACTERIAL; CHROMOSOMES, HUMAN, PAIR 1; CHROMOSOMES, MAMMALIAN; GENOMIC LIBRARY; HUMANS; MICROSATELLITE REPEATS; RADIATION HYBRID MAPPING; SWINE; SYNTENY;

SUS SCROFA;

EID: 10744221074     PISSN: 14248581     EISSN: None     Source Type: Journal    
DOI: 10.1159/000073423     Document Type: Article

References (19)

1. Andersson L, Haley CS, Ellegren H, Knott SA, Johansson M, Andersson K, Andersson-Eklund L, Edfors-Lilja I, Fredholm M, Hansson I, Hakansson J, Lundstrom K: Genetic mapping of quantitative trait loci for growth and fatness in pigs. Science 263:1771-1774 (1994).
2. Boehnke M, Lunetta K, Hauser E, Lange K, Uro J, Vanderstoep J: RHMAP 3.0 University of Michigan, http://www.sph.umich.edu/group/statgen/software (1996).
3. de Koning DJ, Janss LL, Rattink AP, van Oers PA, de Vries BJ, Groenen MA, van der Poel JJ, de Groot PN, Brascamp EW, van Arendonk JA: Detection of quantitative trait loci for backfat thickness and intramuscular fat content in pigs (Sus scrofa). Genetics 152:1679-1690 (1999).
4. Fridolfsson AK, Hori T, Wintero AK, Fredholm M, Yerle M, Robic A, Andersson L, Ellegren H: Expansion of the pig comparative map by expressed sequence tags (EST) mapping. Mammal Genome 8:907-912 (1997).
5. Fujishima-Kanaya N, Toki D, Suzuki K, Sawazaki T, Hiraiwa H, Iida M, Hayashi T, Uenishi H, Wada Y, Ito T, Awata T: Development of 50 gene-associated microsatellite markers using BAC clones and the construction of swine chromosome 4. Anim Genet 34:135-141 (2003).
6. Goureau A, Yerle M, Schmitz A, Riquet J, Milan D, Pinton P, Frelat G, Gellin J: Human and porcine correspondence of chromosome segments using bidirectional chromosome painting. Genomics 36:252-262 (1996).
7. Grindflek E, Szyda J, Liu Z, Lien S: Detection of quantitative trait loci for meat quality in a commercial slaughter pig cross. Mammal Genome 12:299-304 (2001).
8. Hawken RJ, Murtaugh J, Flickinger GH, Yerle M, Robic A, Milan D, Gellin J, Beattie CW, Shook LB, Alexander LJ: A first-generation porcine whole-genome radiation hybrid map. Mammal Genome 10:824-830 (1999).
9. Madsen O, Scally M, Douady CJ, Kao DJ, DeBry RW, Adkins R, Amrine HM, Stanhope MJ, de Jong WW, Springer MS: Parallel adaptive radiations in two major clades of placental mammals. Nature 409:610-614 (2001).
10. Malek M, Dekkers JC, Lee HK, Baas TJ, Rothschild MF: A molecular genome scan analysis to identify chromosomal regions influencing economic traits in the pig. I. Growth and body composition. Mammal Genome 12:630-636 (2001).
11. Milan D, Hawken R, Cabau C, Leroux S, Genet C, Lahbib Y, Tosser G, Robic A, Hatey F, Alexander L, Beattie C, Schook L, Yeale M, Gellin J: IMpRH server an RH mapping server available on the Web. Bioinformatics 16:558-559 (2000).
12. Murphy WJ, Eizirik E, Johnson WE, Zhang YP, Ryder OA, O'Brien SJ: Molecular phylogenetics and the origins of placental mammals. Nature 409: 614-618 (2001).
13. Oefner PJ, Hunicke-Smith SP, Chiang L, Dietrich F, Mulligan J, Davis RW: Efficient random subcloning of DNA sheared in a recirculating point-sink flow system. Nucl Acids Res 24:3879-3886 (1996).
14. Pinton P, Schibler L, Cribiu E, Gellin J, Yerle M: Localization of 113 anchor loci in pigs: improvement of the comparative map for humans, pigs, and goats. Mammal Genome 11:306-315 (2000).
15. Rettenberger G, Klett C, Zechner U, Kunz J, Vogel W, Hameister H: Visualization of the conservation of synteny between humans and pigs by heterologous chromosomal painting. Genomics 26:372-378 (1995).
16. Stratil A, Kubickova S, Peelman LJ, Reiner G, Musilova P, Van Poucke M, Rubes J, Geldermann H: FISH, RH and linkage assignment of the porcine ABCD3 (PXMP1) gene to the distal end of chromosome 4q. Anim Genet 32:323-325 (2001).
17. Suzuki K, Asakawa S, Iida M, Shimanuki S, Fujishima N, Hiraiwa H, Murakami Y, Shimizu N, Yasue H: Construction and evaluation of a porcine bacterial artificial chromosome library. Anim Genet 31:8-12 (2000).
18. Walling GA, Visscher PM, Andersson L, Rothschild MF, Wang L, Moser G, Groenen MA, Bidanel JP, Cepica S, Archibald AL, Geldermann H, de Koning DJ, Milan D, Haley CS: Combined analyses of data from quantitative trait loci mapping studies. Chromosome 4 effects on porcine growth and fatness. Genetics 155:1369-1378 (2000).
19. Yerle M, Pinton P, Robic A, Alfonso A, Palvadeau Y, Delcros C, Hawken R, Alexander L, Beattie C, Schook L, Milan D, Gellin J: Construction of a whole-genome radiation hybrid panel for high-resolution gene mapping in pigs. Cytogenet Cell Genet 82:182-188 (1998).