Test of Significant Differences with a priori Probability in Microarray Experiments

Analytical Sciences

Volumn 19, Issue 11, 2003, Pages 1529-1535

  Toda, Kyoko ^a   Ishida, Seiichi ^a   Nakata, Kotoko ^a   Matsuda, Rieko ^a   Shigemoto Mogami, Yukari ^a   Fujishita, Kayoko ^a   Ozawa, Shogo ^a   Sawada, Jun Ichi ^a   Inoue, Kazuhide ^a   Shudo, Koichi ^a,b   Hayashi, Yuzuru ^a  

^a NATIONAL INSTITUTE OF HEALTH SCIENCES   (Japan)

^b Japan Pharmaceutical Info Center   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

CELL CULTURE; GENE EXPRESSION; MICROARRAYS;

A-PRIORI PROBABILITIES; GENE EXPRESSION LEVELS; INSTRUMENTAL ANALYSIS; LIMIT OF DETECTION; MACROPHAGE DIFFERENTIATIONS; MICROARRAY EXPERIMENTS; SAMPLE PREPARATION; STANDARD DEVIATION;

UNCERTAINTY ANALYSIS;

ARTICLE; CELL DIFFERENTIATION; DNA MICROARRAY; DNA REPAIR; EVALUATION; GENE EXPRESSION; GENE REPLICATION; MACROPHAGE; PROBABILITY; STATISTICAL ANALYSIS;

EID: 10744219908     PISSN: 09106340     EISSN: None     Source Type: Journal    
DOI: 10.2116/analsci.19.1529     Document Type: Article

References (35)

1. M.-L. T. Lee, F. C. Kuo, G. A. Whitmore, and J. Sklar, Proc. Natl. Acad. Sci. USA, 2000, 97, 9834.
2. W. Pan, Bioinformatics, 2000, 18, 546.
3. W. Pan, J. Lin, and C. T. Le, Genome Biology, 2002, 3.
4. D. M. Rocke and B. Durbin, J. Comput. Biol., 2001, 8, 557.
5. M. A. Newton, C. M. Kendziorski, C. S. Richmond, F. R. Blatiner, and K. W. Tsui, J. Comput. Biol., 2001, 8, 37.
6. T. Ideker, V. Thorsson, S. F. Siegel, and L. E. Hood, J. Comput. Biol., 2000, 7, 805.
7. P. Baldi and A. D. Long, Bioinformatics, 2001, 17, 509.
8. V. G. Tusher, R. Tibshirani, and G. Chu, Proc. Natl. Acad. Sci. USA, 2001, 98, 5116.
9. R. D. Wolfinger, G. Gibson, E. D. Wolfinger, L. Bennett, H. Hamadeh, P. Bushel, C. Afshari, and R. S. Paules, J. Comput. Biol., 2001, 8, 625.
10. C. Li and W. H. Wong, Proc. Natl. Acad. Sci. USA, 2001, 98, 31.
11. L. Wernisch, S. L. Kendall, S. Soneji, A. Wietzorrek, T. Parish, J. Hinds, P. D. Butcher, and N. G. Stoker, Bioinformatics, 2003, 19, 53.
12. J. F. K. Huber, J. A. R. J. Hulsman, and C. A. M. Meijers, J. Chromatogr., 1971, 62, 79.
13. H. Barth, E. Dallmeier, G. Courtois, H. E. Keller, and B. L. Karger, J. Chromatogr., 1973, 83, 289.
14. E. Grushka and I. Zamir, Chem. Anal., 1989, 98, 529.
15. J. D. Ingle, Jr. and S. R. Crouch, "Spectrochemical analysis", 1988, Prentice-Hall, Inc., New Jersey.
16. N. W. Bower and J. D. Ingle, Jr., Anal. Chem., 1976, 48, 686.
17. N. W. Bower and J. D. Ingle, Jr., Anal. Chem., 1977, 49, 574.
18. C. Th. J. Alkemade, W. Snelleman, G. D. Boutilier, B. D. Pollard, J. D. Winefordner, T. L. Chester, and N. Omenetto, Spectrochim. Acta, 1978, 33B, 383.
19. G. D. Boutilier, B. D. Pollard, J. D. Winefordner, T. L. Chester, and N. Omenetto, Spectrochim. Acta, 1978, 33B, 401.
20. C. Th. J. Alkemade, W. Snelleman, G. D. Boutilier, and J. D. Winefordner, Spectrochim. Acta, 1980, 35B, 261.
21. P. W. J. M. Boumans, Anal. Chem., 1994, 66, 459A.
22. P. W. J. M. Boumans, Spectrochim. Acta, 1981, 36B, 1031.
23. Y. Hayashi and R. Matsuda, Anal. Chem., 1994, 66, 2874.
24. Y. Hayashi, R. Matsuda, and R. B. Poe, Chromatographia, 1995, 41, 66.
25. R. Matsuda, Y. Hayashi, S. Sasaki, K. Saito, K. Iwaki, H. Harakawa, M. Satoh, Y. Ishizuki, and T. Kato, Anal. Chem., 1998, 70, 319.
26. E. D. Prudnikov, J. W. Elgersma, and H. C. Smit, J. Anal. At. Spectrom., 1994, 9, 619.
27. H. C. Smit and H. L. Walg, Chromatographia, 1976, 9, 483.
28. Y. Hayashi, R. Matsuda, and R. B. Poe, Analyst, 1995, 121, 591.
29. H. Q. Nguyen, B. Hoffman-Liebermann, and D. A. Liebermann, Cell, 1993, 72, 197.
30. P. Tamayo, D. Slonim, J. Mesirov, Q. Zhu, S. Kitareewan, E. Dmitrovsky, E. Lander, and T. R. Golub, Proc. Natl. Acad. Sci. USA, 1999, 96, 2907.
31. K. Nakajima, M. Hamanoue, M. Shimojo, N. Takei, and S. Kohsaka, Biomed. Res., 1989, 10, 411.
32. J. C. Miller and J. N. Miller, "Statistics for analytical chemistry", 1988, Ellis Horwood, West Sussex.
33. A. Sakuma, "Bioassay-Design and analysis", 1964, University of Tokyo.
34. G. L. Long and J. D. Winefordner, Anal. Chem., 1983, 55, 712A.
35. D. C. Hoyle, M. Rattray, R. Jupp, and A. Brass, Bioinformatics, 2002, 18, 576.