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note
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In vitro binding experiments were done as described in (6).
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note
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The constructs encoding Flag-TNFR-1 and Flag-ΔTNFR-1 were described elsewhere (18). To facilitate epitope tagging, we cloned DR3 and ΔDR3(1-321) into the FLAG plasmid pCMV1FLAG (IBI Kodak) with the use of the signal peptide provided by the vector. Transfection of 293 cells was done by calcium phosphate precipitation with the constructs encoding the indicated proteins in combination with pcDNA3-CrmA (17) to prevent cell death and thus maintain protein expression. Cells were lysed in 1 ml of lysis buffer (50 mM Hepes, 150 mM NaCl, 1 mM EDTA, 1% NP-40, and a protease inhibitor cocktail). Lysates were immunoprecipitated with a control monoclonal antibody (mAb) or Flag mAb for at least 4 hours at 4°C, as described (18). The beads were washed three times with lysis buffer, but in the case of TRADD binding, the NaCl concentration was adjusted to 1 M. The precipitates were fractionated by 12.5% SDS-polyacrylamide gel electrophoresis (PAGE) and transferred to nitrocellulose. Subsequent protein immunoblotting was performed as described (10, 18).
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Cell death assays were done as described (6, 18). The data (mean ± SD) are the percentage of round blue cells among the total number of blue cells counted. Data were obtained from at least three independent experiments.
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NF-κB luciferase assays were performed as described (11, 12, 14, 18). The amounts of dominant negative inhibitors used were four times the amounts of the death receptors. Total DNA was kept constant.
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36
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note
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Supported by the Medical Scientist Training Program (A.M.C.) and NIH grant GM-07863 (A.M.C.). The initial EST clones used in this study were discovered as part of a joint collaboration between scientists at The Institute for Genomic Research and at Human Genome Sciences. We thank D. Goeddel for the TRAF2 and RIP constructs, I. Jones for manuscript preparation, and H. Duan and C. Vincenz for helpful discussions.
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