Bovine genomics update: Making a cow jump over the moon

Genetical Research

Volumn 84, Issue 1, 2004, Pages 3-9

  Sonstegard, Tad S ^a   Van Tassell, Curtis P ^a  

^a AGRICULTURAL RESEARCH SERVICE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BIOLOGICAL MARKER; CALPASTATIN; GROWTH HORMONE RECEPTOR; LEPTIN RECEPTOR; THYROGLOBULIN;

ANIMAL WELLBEING; BIOLOGICAL TRAIT; CATTLE; CATTLE FARMING; DNA FINGERPRINTING; DNA LIBRARY; FOOD SAFETY; GENE SEQUENCE; GENETIC GAIN; GENETIC LINKAGE; GENETIC SELECTION; GENOME ANALYSIS; INTERNET; NONHUMAN; PHENOTYPIC VARIATION; QUALITATIVE ANALYSIS; QUANTITATIVE ANALYSIS; REVIEW; SINGLE NUCLEOTIDE POLYMORPHISM;

ANIMALS; CATTLE; CHROMOSOME MAPPING; GENETIC MARKERS; GENOME; GENOMICS; QUANTITATIVE TRAIT LOCI;

ANIMALIA; BOS TAURUS; BOVINAE;

EID: 10344228734     PISSN: 00166723     EISSN: None     Source Type: Journal    
DOI: 10.1017/S0016672304006925     Document Type: Review

References (52)

1. Arias, J. & Kirkpatrick, B. (2004). Mapping of bovine ovulation rate QTL: an analytical approach for three generation pedigrees. Animal Genetics 35, 7-13.
2. Ashwell, M. S., Heyen, D. W., Sonstegard, T. S., Van Tassell, C. P., Da, Y., VanRaden, P. M., Ron, M., Weller, J. I. & Lewin, H. A. (2004). Detection of quantitative trait loci affecting milk production, health, and reproductive traits in Holstein cattle. Journal of Dairy Science 87, 468-475.
3. Band, M. R., Larson, J. H., Rebeiz, M., Green, C. A., Heyen, D. W., Donovan, J., Windish, R., Steining, C., Mahyuddin, P., Womack, J. E. & Lewin, H. A. (2000). An ordered comparative map of the cattle and human genomes. Genome Research 10, 1359-1368.
4. Barendse, W. J. (1999). Assessing lipid metabolism. Patent number WO 99/23248.
5. Barendse, W., Armitage, S. M., Kossarek, L. M., Shalom, A., Kirkpatrick, B. W., Ryan, A. M., Clayton, D., Li, L., Neilbergs, H. K., Zhang, N., Grosse, W. M., Weiss, J., Creighton, P., McCarthy, F., Ron, M., Teale, A. J., Fries, R., McGraw, R. A., Moore, S. S., Georges, M., Soller, M., Womack, J. E. & Hetzel, D. J. S. (1994). A genetic linkage map of the bovine genome. Nature Genetics 6, 227-235.
6. Barendse, W., Vaiman, D., Kemp, S. J., Sugimoto, Y., Armitage, S. M., Williams, J. L., Sun, H. S., Eggen, A., Agaba, M., Aleyasin, S. A., Band, M., Bishop, M. D., Buitkamp, J., Byrne, K., Collins, F., Cooper, L., Coppettiers, W., Denys, B., Drinkwater, R. D., Easterday, K., Elduque, C., Ennis, S., Erhardt, G., Li, L. & Lil, L. (1997). A medium-density genetic linkage map of the bovine genome. Mammalian Genome 8, 21-28.
7. Beckmann, J. S. & Soller, M. (1983). Restriction fragment length polymorphisms in genetic improvement: methodologies, mapping and costs. Theoretical and Applied Genetics 67, 35.
8. Beh, K. J., Hulme, D. J., Callaghan, M. J., Leish, Z., Lenane, I., Windon, R. G. & Maddox, J. F. (2002). A genome scan for quantitative trait loci affecting resistance to Trichostrongylus colubriformis in sheep. Animal Genetics 33, 97-106.
9. Bennewitz, J., Reinsch, N., Grohs, C., Leveziel, H., Malafosse, A., Thomsen, H., Xu, N., Looft, C., Kuhn, C., Brockmann, G. A., Schwerin, M., Weimann, C., Hiendleder, S., Erhardt, G., Medjugorac, I., Russ, I., Forster, M., Brenig, B., Reinhardt, F., Reents, R., Averdunk, G., Blumel, J., Boichard, D. & Kalm, E. (2003). Combined analysis of data from two grand-daughter designs: a simple strategy for QTL confirmation and increasing experimental power in dairy cattle. Genetics, Selection, Evolution 35, 319-338.
10. Bennewitz, J., Reinsch, N., Paul, S., Looft, C., Kaupe, B., Weimann, C., Erhardt, G., Thaller, G., Kuhn, C., Schwerin, M., Thomsen, H., Reinhardt, F., Reents, R. & Kalm, E. (2004). The DGAT1 K232A mutation is not solely responsible for the milk production quantitative trait locus on the bovine chromosome 14. Journal of Dairy Science 87 431-442.
11. Bishop, M. D., Kappes, S. M., Keele, J. W., Stone, R. W., Sunden, S. L. F., Hawkins, G. A., Toldo, S. S., Fries, R., Grosz, M. D., Yoo, J. & Beattie, C. W. (1994). A genetic linkage map for cattle. Genetics 136, 619-639.
12. Blattman, A. N., Kirkpatrick, B. W. & Gregory, K. E. (1996). A search for quantitative trait loci for ovulation rate in cattle. Animal Genetics 27, 157-162.
13. Blott, S., Kim, J. J., Moisio, S., Schmidt-Kuntzel, A., Cornet, A., Berzi, P., Cambisano, N., Ford, C., Grisart, B., Johnson, D., Karim, L., Simon, P., Snell, R., Spelman, R., Wong, J., Vilkki, J., Georges, M., Farnir, F. & Coppieters, W. (2003). Molecular dissection of a quantitative trait locus. A phenylaianine-to-tyrosine substitution in the transmembrane domain of the bovine growth hormone receptor is associated with a major effect on milk yield and composition. Genetics 163, 253-266.
14. Boichard, D., Grohs, C., Bourgeois, F., Cerqueira, F., Faugeras, R., Neau, A., Rupp, R., Amigues, Y., Boscher, M. Y. & Leveziel, H. (2003). Detection of genes influencing economic traits in three French dairy cattle breeds. Genetics, Selection, Evolution 35, 77-101.
15. Bovenhuis, H., van Arendonk, J. A. & Korver, S. (1992). Associations between milk protein polymorphisms and milk production traits. Journal of Dairy Science 75, 2549-2559.
16. Casas, E., Keele, J. W., Shackelford, S. D., Koohmaraie, M., Sonstegard, T. S., Smith, T. P., Kappes, S. M. & Stone, R. T. (1998). Association of the muscle hypertrophy locus with carcass traits in beef cattle. Journal of Animal Science 76, 468-473.
17. Freyer, G., Sorensen, P., Kuhn, C., Weikard, R. & Hoeschele, I. (2003). Search for pleiotropic QTL on chromosome BTA6 affecting yield traits of milk production. Journal of Dairy Science 86, 999-1008.
18. Gasbarre, L. C., Sonstegard, T. S., Van Tassell, C. P. & Padilha, T. (2002). Detection of QTL affecting parasite resistance in a selected herd of Angus cattle. Proceedings of the 7th World Congress on Genetics Applied to Livestock Production 31, 627-630. Montpellier, France.
19. Georges, M., Nielsen, D., Mackinnon, M., Mishra, A., Okimoto, R., Pasquino, A. T., Sargeant, L. S., Sorensen, A., Steele, R. R., Zhao, X., Womack, J. E. & Hoeschele, I. (1995). Mapping quantitative trait loci controlling milk production in dairy cattle by exploiting progeny testing. Genetics 139, 907-920.
20. Grisart, B., Coppieters, W., Farnir, F., Karim, L., Ford, C., Berzi, P., Cambisano, N., Mni, M., Reid, S., Simon, P., Spelman, R., Georges, M. & Snell, R. (2002). Positional candidate cloning of a QTL in dairy cattle: identification of a missense mutation in the bovine DGAT1 gene with major effect on milk yield and composition. Genome Research 12, 222-231.
21. Grisart, B., Farnir, F., Karim, L., Cambisano, N., Kim, J. J., Kvasz, A., Mni, M., Simon, P., Frere, J. M., Coppieters, W. & Georges, M. (2004). Genetic and functional confirmation of the causality of the DGAT1 K232A quantitative trait nucleotide in affecting milk yield and composition. Proceedings of the National Academy of Sciences of the USA 101, 2398-2403.
22. Grobet, L., Martin, L. J., Poncelet, D., Pirottin, D., Brouwers, B., Riquet, J., Schoeberlein, A., Dunner, S., Menissier, F., Massabanda, J., Fries, R., Hanset, R. & Georges, M. (1997). A deletion in the bovine myostatin gene causes the double-muscled phenotype in cattle. Nature Genetics 17, 71-74.
23. Hiendleder, S., Thomsen, H., Reinsch, N., Bennewitz, J., Leyhe-Horn, B., Looft, C., Xu, N., Medjugorac, I., Russ, I., Kuhn, C., Brockmann, G. A., Blumel, J., Brenig, B., Reinhardt, F., Reents, R., Averdunk, G., Schwerin, M., Forster, M., Kalm, E. & Erhardt, G. (2003). Mapping of QTL for body conformation and behavior in cattle. Journal of Heredity 94, 496-506.
24. Kappes, S. M., Keele, J. W., Stone, R. T., McGraw, R. A., Sonstegard, T. S., Smith, T. P., Lopez-Corrales, N. L. & Beattie, C. W. (1997). A second-generation linkage map of the bovine genome. Genome Research 7, 235-249.
25. Kappes, S. M., Bennett, G. L., Keele, J. W., Echternkamp, S. E., Gregory, K. E. & Thallman, R. M. (2000). Initial results of genomic scans for ovulation rate in a cattle population selected for increased twinning rate. Journal of Animal Science 78, 3053-3059.
26. Khatkar, M. S., Thomson, P. C., Tammen, I. & Raadsma, H. W. (2004). Quantitative trait loci mapping in dairy cattle: review and meta-analysis. Genetics, Selection, Evolution 36, 163-190.
27. Kim, J. J., Farnir, F., Savell, J. & Taylor, J. F. (2003). Detection of quantitative trait loci for growth and beef carcass fatness traits in a cross between Bos taurus (Angus) and Bos indicus (Brahman) cattle. Journal of Animal Science 81, 1933-1942.
28. Kirkpatrick, B. W., Byla, B. M. & Gregory, K. E. (2000). Mapping quantitative trait loci for bovine ovulation rate. Mammalian Genome 11, 136-139.
29. Lien, S., Karlsen, A., Klemetsdal, G., Vage, D. I., Olsaker, I., Klungland, H., Aasland, M., Heringstad, B., Ruane, J. & Gomez-Raya, L. (2000). A primary screen of the bovine genome for quantitative trait loci affecting twinning rate. Mammalian Genome 11, 877-882.
30. Liu, Y., Jansen, G. B. & Lin, C. Y. (2004). Quantitative trait loci mapping for dairy cattle production traits using a maximum likelihood method. Journal of Dairy Science 87, 491-500.
31. Loftus, R. T., MacHugh, D. E., Bradley, D. G., Sharp, P. M. & Cunningham, P. (1994). Evidence for two independent domestications of cattle. Proceedings of the National Academy of Sciences of the USA 91, 2757-2761.
32. Ma, R. Z., Beever, J. E., Da, Y., Green, C. A., Russ, I., Park, C., Heyen, D. W., Everts, R. E., Fisher, S. R., Overton, K. M., Teale, A. J., Kemp, S. J., Hines, H. C., Guerin, G. & Lewin, H. A. (1996). A male linkage map of the cattle (Bos taurus) genome. Journal of Heredity 87, 261-271.
33. MacNeil, M. D. & Grosz, M. D. (2002). Genome-wide scans for QTL affecting carcass traits in Hereford × composite double backcross populations. Journal of Animal Science 80, 2316-2324.
34. McPherron, A. C., Lawler, A. M. & Lee, S. J. (1997). Regulation of skeletal muscle mass in mice by a new TGF-beta superfamily member. Nature 387, 83-90.
35. Mosig, M. O., Lipkin, E., Khutoreskaya, G., Tchourzyna, E., Soller, M. & Friedmann, A. (2001). A whole genome scan for quantitative trait loci affecting milk protein percentage in Israeli-Holstein cattle, by means of selective milk DNA pooling in a daughter design, using an adjusted false discovery rate criterion. Genetics 157, 1683-1698.
36. Nicholas, F. W. (2003). Online Mendelian Inheritance in Animals (OMIA): a comparative knowledgebase of genetic disorders and other familial traits in non-laboratory animals. Nucleic Acids Research 31, 275-277.
37. Olsen, H. G., Gomez-Raya, L., Vage, D. I., Olsaker, I., Klungland, H., Svendsen, M., Adnoy, T., Sabry, A., Klemetsdal, G., Schulman, N., Kramer, W., Thaller, G., Ronningen, K. & Lien, S. (2002). A genome scan for quantitative trait loci affecting milk production in Norwegian dairy cattle. Journal of Dairy Science 85, 3124-3130.
38. Page, B. T., Casas, E., Heaton, M. P., Cullen, N. G., Hyndman, D. L., Morris, C. A., Crawford, A. M., Wheeler, T. L., Koohmaraie, M., Keele, J. W. & Smith, T. P. (2002). Evaluation of single-nucleotide polymorphisms in CAPN1 for association with meat tenderness in cattle. Journal of Animal Science 80, 3077-3085.
39. Plante, Y., Gibson, J. P., Nadesalingam, J., Mehrabani-Yeganeh, H., Lefebvre, S., Vandervoort, G. & Jansen, G. B. (2001). Detection of quantitative trait loci affecting milk production traits on 10 chromosomes in Holstein cattle. Journal of Dairy Science 84, 1516-1524.
40. Schulman, N. F., Viitala, S. M., de Koning, D. J., Virta, J., Maki-Tanila, A. & Vilkki, J. H. (2004). Quantitative trait loci for health traits in Finnish Ayrshire cattle. Journal of Dairy Science 87, 443-449.
41. Smith, T. P., Lopez-Corrales, N. L., Kappes, S. M. & Sonstegard, T. S. (1997). Myostatin maps to the interval containing the bovine mh locus. Mammalian Genome 8, 742-744.
42. Smith, T. P., Grosse, W. M., Freking, B. A., Roberts, A. J., Stone, R. T., Casas, E., Wray, J. E., White, J., Cho, J., Fahrenkrug, S. C., Bennett, G. L., Heaton, M. P., Laegreid, W. W., Rohrer, G. A., Chitko-McKown, C. G., Pertea, G., Holt, I., Karamycheva, S., Liang, F., Quackenbush, J. & Keele, J. W. (2001). Sequence evaluation of four pooled-tissue normalized bovine cDNA libraries and construction of a gene index for cattle. Genome Research 11, 626-630.
43. Smith, T. P. L., Thallman, R. M., Casas, E., Shackelford, S. D., Wheeler, T. L. & Koohmaraie, M. (2003). Theory and application of genome-based approaches to improve quality and value of beef. Outlook on Agriculture 32, 253-265.
44. Sonstegard, T. S., Capuco, A. V., White, J., Van Tassell, C. P., Connor, E. E., Cho, J., Sultana, R., Shade, L., Wray, J. E., Wells, K. D. & Quackenbush, J. (2002). Analysis of bovine mammary gland EST and functional annotation of the Bos taurus gene index. Mammalian Genome 13, 373-379.
45. Spelman, R. J., Coppettiers, W., Grisart, B., Blott, S. & Georges, M. (2000). Review of QTL mapping in the New Zealand and Dutch dairy cattle populations. Proceedings of the Australian Association of Animal Breeding and Genetics 14, 11-16.
46. Stone, R. T., Grosse, W. M., Casas, E., Smith, T. P., Keele, J. W. & Bennett, G. L. (2002). Use of bovine EST data and human genomic sequences to map 100 gene-specific bovine markers. Mammalian Genome 13, 211-215.
47. Thaller, G., Kuhn, C., Winter, A., Ewald, G., Bellmann, O., Wegner, J., Zuhlke, H. & Fries, R. (2003). DGAT1, a new positional and functional candidate gene for intramuscular fat deposition in cattle. Animal Genetics 34, 354-357.
48. Van Tassell, C. P., Sonstegard, T. S. & Ashwell, M. S. (2004). Mapping quantitative trait loci affecting dairy conformation to chromosome 27 in two Holstein grand-sire families. Journal of Dairy Science 87, 450-457.
49. Viitala, S. M., Schulman, N. F., de Koning, D. J., Elo, K., Kinos, R., Virta, A., Virta, J., Maki-Tanila, A. & Vilkki, J. H. (2003). Quantitative trait loci affecting milk production traits in Finnish Ayrshire dairy cattle. Journal of Dairy Science 86, 1828-1836.
50. Weller, J. I., Kashi, Y. & Soller, M. (1990). Power of daughter and granddaughter designs for determining linkage between marker loci and quantitative trait loci in dairy cattle. Journal of Dairy Science 73, 2525-2537.
51. Wiener, P., Maclean, I., Williams, J. L. & Woolliams, J. A. (2000). Testing for the presence of previously identified QTL for milk production traits in new populations. Animal Genetics 31, 385-395.
52. Williams, J. L., Eggen, A., Ferretti, L., Farr, C. J., Gautier, M., Amati, G., Ball, G., Caramorr, T., Critcher, R., Costa, S., Hextall, P., Hills, D., Jeulin, A., Kiguwa, S. L., Ross, O., Smith, A. L., Saunier, K., Urquhart, B. & Waddington, D. (2002). A bovine whole-genome radiation hybrid panel and outline map. Mammalian Genome 13, 469-474.