-
1
-
-
0036009329
-
DNA-cation interactions: Quo vadis?
-
Egli,M. (2002) DNA-cation interactions: quo vadis? Chem. Biol., 9, 277-286.
-
(2002)
Chem. Biol.
, vol.9
, pp. 277-286
-
-
Egli, M.1
-
2
-
-
0035367927
-
DNA-cation interactions: The major and minor grooves are flexible ionophores
-
Hud,N.V. and Polak,M. (2001) DNA-cation interactions: the major and minor grooves are flexible ionophores. Curr. Opin. Struct. Biol., 11, 293-301.
-
(2001)
Curr. Opin. Struct. Biol.
, vol.11
, pp. 293-301
-
-
Hud, N.V.1
Polak, M.2
-
3
-
-
0017895903
-
The molecular theory of polyelectrolyte solutions with applications to the electrostatic properties of polynucleotides
-
Manning,G.S. (1978) The molecular theory of polyelectrolyte solutions with applications to the electrostatic properties of polynucleotides. Q. Rev. Biophy., 11, 179-246.
-
(1978)
Q. Rev. Biophy.
, vol.11
, pp. 179-246
-
-
Manning, G.S.1
-
5
-
-
0019544304
-
Effects of methylation on a synthetic polynucleotide: The B-Z transition in poly(dG-m5dC).poly(dG-m5dC)
-
Behe,M.J. and Felsenfeld,G. (1981) Effects of methylation on a synthetic polynucleotide: The B-Z transition in poly(dG-m5dC).poly(dG-m5dC). Proc. Natl Acad. Sci. USA, 78, 1619-1623.
-
(1981)
Proc. Natl Acad. Sci. USA
, vol.78
, pp. 1619-1623
-
-
Behe, M.J.1
Felsenfeld, G.2
-
6
-
-
0021119770
-
The chemistry and biology of left-handed Z-DNA
-
Rich,A., Nordheim,A. and Wang,A.H.J. (1984) The chemistry and biology of left-handed Z-DNA. Annu. Rev. Biochem., 53, 791-846.
-
(1984)
Annu. Rev. Biochem.
, vol.53
, pp. 791-846
-
-
Rich, A.1
Nordheim, A.2
Wang, A.H.J.3
-
7
-
-
0021760887
-
Critical amount of oligovalent ion binding required for the B-Z transition of poly (dG-m5dC)
-
Chen,H.H., Behe,M.J. and Rau,D.C. (1984) Critical amount of oligovalent ion binding required for the B-Z transition of poly (dG-m5dC). Nucleic Acids Res., 12, 2381-2389.
-
(1984)
Nucleic Acids Res.
, vol.12
, pp. 2381-2389
-
-
Chen, H.H.1
Behe, M.J.2
Rau, D.C.3
-
8
-
-
0025778131
-
Computation of ionic distributions around charged biomolecular structures: Results for right-handed and left-handed DNA
-
Klement,R., Soumpasis,D.M. and Jovin,T.M. (1991) Computation of ionic distributions around charged biomolecular structures: results for right-handed and left-handed DNA. Proc. Natl Acad. Sci. USA, 88, 4631-4635.
-
(1991)
Proc. Natl Acad. Sci. USA
, vol.88
, pp. 4631-4635
-
-
Klement, R.1
Soumpasis, D.M.2
Jovin, T.M.3
-
9
-
-
10244280518
-
Ionic effects on DNA electrostatic and elastic stability
-
Vasilescu,D., Jaz,J., Packer,L. and Pullman,B. (eds), Birkhauser Verlag, Basel
-
Fenley,M.O., Manning,G.S. and Olson,W.K. (1990) Ionic effects on DNA electrostatic and elastic stability. In Vasilescu,D., Jaz,J., Packer,L. and Pullman,B. (eds), Water and Ions in Biomolecular Systems. Birkhauser Verlag, Basel, Vol. I, pp. 29-44.
-
(1990)
Water and Ions in Biomolecular Systems
, vol.1
, pp. 29-44
-
-
Fenley, M.O.1
Manning, G.S.2
Olson, W.K.3
-
10
-
-
0027381083
-
Composite cylinder models of DNA: Application to the B-Z transition of DNA
-
Demaret,J.P. and Gueron,M. (1993) Composite cylinder models of DNA: application to the B-Z transition of DNA. Biophys. J., 65, 1700-1713.
-
(1993)
Biophys. J.
, vol.65
, pp. 1700-1713
-
-
Demaret, J.P.1
Gueron, M.2
-
11
-
-
0343619499
-
A unified theory of the B-Z transition of DNA in high and low concentrations of multivalent ions
-
Gueron,M., Demaret,J.P. and Filoche,M. (2000) A unified theory of the B-Z transition of DNA in high and low concentrations of multivalent ions. Biophy. J., 78, 1070-1083.
-
(2000)
Biophy. J.
, vol.78
, pp. 1070-1083
-
-
Gueron, M.1
Demaret, J.P.2
Filoche, M.3
-
12
-
-
0022425387
-
Structural basis for stabilization of Z-DNA by cobalt hexammine and magnesium cations
-
Gessner,R.V., Quigley,G.J., Wang,A.H.J., van der Marel,G.A., van Boom,J.H. and Rich,A. (1985) Structural basis for stabilization of Z-DNA by cobalt hexammine and magnesium cations. Biochemistry, 24, 237-240.
-
(1985)
Biochemistry
, vol.24
, pp. 237-240
-
-
Gessner, R.V.1
Quigley, G.J.2
Wang, A.H.J.3
van der Marel, G.A.4
van Boom, J.H.5
Rich, A.6
-
14
-
-
0032128296
-
Structure of d(CACGCG).d(CGCGTG) in crystals grown in the presence of ruthenium (III) hexammine chloride
-
Karthe,P. and Gautham,N. (1998) Structure of d(CACGCG).d(CGCGTG) in crystals grown in the presence of ruthenium (III) hexammine chloride. Acta Crystallogr., D54, 501-509.
-
(1998)
Acta Crystallogr.
, vol.D54
, pp. 501-509
-
-
Karthe, P.1
Gautham, N.2
-
15
-
-
0029037450
-
Sequence-dependent micro heterogeneity of Z-DNA: The crystal and molecular structures of d(CACGCG).d(CGCGTG) and d(CGCACG).d(CGTGCG)
-
Sadasivan,C. and Gautham,N. (1995) Sequence-dependent micro heterogeneity of Z-DNA: the crystal and molecular structures of d(CACGCG).d(CGCGTG) and d(CGCACG).d(CGTGCG). J. Mol. Biol., 248 918-930.
-
(1995)
J. Mol. Biol.
, vol.248
, pp. 918-930
-
-
Sadasivan, C.1
Gautham, N.2
-
16
-
-
84920325457
-
AMoRe: An automated package for molecular replacement
-
Navaza,J. (1994) AMoRe: an automated package for molecular replacement. Acta Crystallogr., A50, 157-163.
-
(1994)
Acta Crystallogr.
, vol.A50
, pp. 157-163
-
-
Navaza, J.1
-
17
-
-
0028103275
-
The CCP4 suite: Programs for protein crystallography
-
Collaborative Computational Project, Number 4
-
Collaborative Computational Project, Number 4 (1994) The CCP4 suite: programs for protein crystallography. Acta Crystallogr. D50, 760-763.
-
(1994)
Acta Crystallogr.
, vol.D50
, pp. 760-763
-
-
-
18
-
-
0019875825
-
Left-handed double helical DNA: Variations in the backbone conformation
-
Wang,A.H.J., Quigley,G.J., Kolpak, van Boom,J.H., van der Marel,G. and Rich,A. (1981) Left-handed double helical DNA: variations in the backbone conformation. Science, 211, 171-176.
-
(1981)
Science
, vol.211
, pp. 171-176
-
-
Wang, A.H.J.1
Quigley, G.J.2
Kolpak van Boom, J.H.3
van der Marel, G.4
Rich, A.5
-
19
-
-
0030924992
-
Refinement of macromolecular structures by the maximum-likelihood method
-
Murshudov,G.N., Vagin,A.A. and Dodson,E.J. (1997) Refinement of macromolecular structures by the maximum-likelihood method. Acta Crystallogr., D53, 240-255.
-
(1997)
Acta Crystallogr.
, vol.D53
, pp. 240-255
-
-
Murshudov, G.N.1
Vagin, A.A.2
Dodson, E.J.3
-
20
-
-
0032522139
-
DNA bending: The prevalence of kinkiness and the virtues of normality
-
Dickerson,R.E. (1998) DNA bending: the prevalence of kinkiness and the virtues of normality. Nucleic Acids Res., 26 1906-1926.
-
(1998)
Nucleic Acids Res.
, vol.26
, pp. 1906-1926
-
-
Dickerson, R.E.1
-
21
-
-
0024058085
-
The definition of generalized helicoidal parameters and of axis curvature for irregular nucleic acids
-
Lavery,R. and Sklenar,H. (1988) The definition of generalized helicoidal parameters and of axis curvature for irregular nucleic acids. J. Biomol. Struct. Dyn., 6, 63-91.
-
(1988)
J. Biomol. Struct. Dyn.
, vol.6
, pp. 63-91
-
-
Lavery, R.1
Sklenar, H.2
-
22
-
-
0031414731
-
Z-DNA crystallography
-
Ho,P.S. and Mooers,B.H.M. (1997) Z-DNA crystallography. Biopolymers, 44, 65-90.
-
(1997)
Biopolymers
, vol.44
, pp. 65-90
-
-
Ho, P.S.1
Mooers, B.H.M.2
-
24
-
-
0030992422
-
Hydrogen-bonded trimers of DNA bases and their interaction with metal cations: Ab initio quantum-chemical and empirical potential study
-
Sponer,J., Burda,J.V., Mejzlik,P., Leszczynski,J. and Hobza,P. (1997) Hydrogen-bonded trimers of DNA bases and their interaction with metal cations: ab initio quantum-chemical and empirical potential study. J. Biomol. Struct. Dyn., 14, 613-628.
-
(1997)
J. Biomol. Struct. Dyn.
, vol.14
, pp. 613-628
-
-
Sponer, J.1
Burda, J.V.2
Mejzlik, P.3
Leszczynski, J.4
Hobza, P.5
-
25
-
-
0029788346
-
Hydrogen bonding and stacking of DNA bases: A review of quantum-chemical ab initio studies
-
Sponer,J., Leszczynski.J. and Hobza,P. (1996) Hydrogen bonding and stacking of DNA bases: a review of quantum-chemical ab initio studies. J. Biomol. Struct. Dyn., 14, 117-135.
-
(1996)
J. Biomol. Struct. Dyn.
, vol.14
, pp. 117-135
-
-
Sponer, J.1
Leszczynski, J.2
Hobza, P.3
-
26
-
-
0013936167
-
Codon-anticodon pairing: The wobble hypothesis
-
Crick,F.H. (1966) Codon-anticodon pairing: the wobble hypothesis. J. Mol. Biol., 19, 548-555.
-
(1966)
J. Mol. Biol.
, vol.19
, pp. 548-555
-
-
Crick, F.H.1
-
27
-
-
0022427781
-
G:T wobble base-pairing in Z-DNA at 1.0 A atomic resolution: The crystal structure of d(CGCGTG)
-
Ho,P.S., Frederick,C.A., Quigley,G.J., van der Marel,G.A., van Boom,J.H., Wang,A.H.J. and Rich,A. (1985) G:T wobble base-pairing in Z-DNA at 1.0 A atomic resolution: the crystal structure of d(CGCGTG). EMBO J., 4, 3617-3623.
-
(1985)
EMBO J.
, vol.4
, pp. 3617-3623
-
-
Ho, P.S.1
Frederick, C.A.2
Quigley, G.J.3
van der Marel, G.A.4
van Boom, J.H.5
Wang, A.H.J.6
Rich, A.7
-
28
-
-
0022400608
-
Structural studies of DNA fragments: The G:T wobble base pair in A, B and Z DNA; the G:A base pair in B-DNA
-
Kennard,O. (1985) Structural studies of DNA fragments: the G:T wobble base pair in A, B and Z DNA; the G:A base pair in B-DNA. J. Biomol. Struct. Dyn., 3, 205-226.
-
(1985)
J. Biomol. Struct. Dyn.
, vol.3
, pp. 205-226
-
-
Kennard, O.1
-
29
-
-
0030929889
-
A magnesium ion core at the heart of a ribozyme domain
-
Cate,J.H., Hanna,R.L. and Doudna,J.A. (1997) A magnesium ion core at the heart of a ribozyme domain. Nature Struct. Biol., 4 553-558.
-
(1997)
Nature Struct. Biol.
, vol.4
, pp. 553-558
-
-
Cate, J.H.1
Hanna, R.L.2
Doudna, J.A.3
-
30
-
-
0030587890
-
Metal-binding sites in the major groove of a large ribozyme domain
-
Cate,J.H. and Doudna,J.A. (1996) Metal-binding sites in the major groove of a large ribozyme domain. Structure, 4, 1221-1229.
-
(1996)
Structure
, vol.4
, pp. 1221-1229
-
-
Cate, J.H.1
Doudna, J.A.2
-
31
-
-
0029796982
-
RNA tertiary structure mediation by adenosine platforms
-
Cate,J.H., Gooding,A.R., Podell,E., Zhou,K., Golden,B.L., Kundrot,C.E., Cech,T.R. and Doudna,J.A. (1996) RNA tertiary structure mediation by adenosine platforms. Science, 273, 1678-1685.
-
(1996)
Science
, vol.273
, pp. 1678-1685
-
-
Cate, J.H.1
Gooding, A.R.2
Podell, E.3
Zhou, K.4
Golden, B.L.5
Kundrot, C.E.6
Cech, T.R.7
Doudna, J.A.8
-
32
-
-
0021760907
-
Tautomerism and conformation of the promutagervic analogue N6-methoxy-2′,3′, 5′-tri-O-methyladenosine
-
Birnbaum,I.G., Kierdaszuk,B. and Shugar,D. (1984) Tautomerism and conformation of the promutagervic analogue N6-methoxy-2′ ,3′, 5′-tri-O-methyladenosine. Nucleic Acids Res., 12, 2447-2460.
-
(1984)
Nucleic Acids Res.
, vol.12
, pp. 2447-2460
-
-
Birnbaum, I.G.1
Kierdaszuk, B.2
Shugar, D.3
-
33
-
-
0001038151
-
Metal-stabilized rare tautomers of nucleobases. 6-Imino tautomer of adenine in a mixed-nucleobase complex of mercury (II)
-
Zamora,F., Kunsman,M., Sabat,M. and Lippert,B. (1997) Metal-stabilized rare tautomers of nucleobases. 6-Imino tautomer of adenine in a mixed-nucleobase complex of mercury (II). Inorg. Chem. 36, 1583-87.
-
(1997)
Inorg. Chem.
, vol.36
, pp. 1583-1587
-
-
Zamora, F.1
Kunsman, M.2
Sabat, M.3
Lippert, B.4
-
34
-
-
0017148262
-
Complementary base pairing and the origin of substitution mutations
-
Topal,M.D. and Fresco,J.R. (1976) Complementary base pairing and the origin of substitution mutations. Nature, 263, 285-289.
-
(1976)
Nature
, vol.263
, pp. 285-289
-
-
Topal, M.D.1
Fresco, J.R.2
-
35
-
-
33748480136
-
Effects of metal-ion binding on nucleobase pairing: Stabilization, prevention and mismatch formation
-
Lippert,B. (1997) Effects of metal-ion binding on nucleobase pairing: stabilization, prevention and mismatch formation. J. Chem. Soc., Dalton Trans., 3971-3976.
-
(1997)
J. Chem. Soc., Dalton Trans.
, pp. 3971-3976
-
-
Lippert, B.1
-
36
-
-
0001708368
-
Interactions of metal-ions with nucleotides and nucleic-acids and their constituents
-
Sigel,H. (1993) Interactions of metal-ions with nucleotides and nucleic-acids and their constituents. Chem. Soc. Rev., 22 255-267.
-
(1993)
Chem. Soc. Rev.
, vol.22
, pp. 255-267
-
-
Sigel, H.1
-
37
-
-
0027267925
-
Crystallographic studies of metal ion-DNA interactioris: Different binding modes of cobalt(II), copper(II) and barium(II) to N7 of guanines in Z-DNA and a drug-DNA complex
-
Gao,Y., Sriram,M. and Wang,A.H.J. (1993) Crystallographic studies of metal ion-DNA interactioris: different binding modes of cobalt(II), copper(II) and barium(II) to N7 of guanines in Z-DNA and a drug-DNA complex. Nucleic Acids Res., 17, 4093-4101.
-
(1993)
Nucleic Acids Res.
, vol.17
, pp. 4093-4101
-
-
Gao, Y.1
Sriram, M.2
Wang, A.H.J.3
-
38
-
-
0023056610
-
Interaction of transition metal ions with Z form poly d(A-C).poly d(G-T) and poly d(A-T) studied by I.R. spectroscopy
-
Adam,S., Bourtayre,P., Liquier,J. and Taillandier,E. (1986) Interaction of transition metal ions with Z form poly d(A-C).poly d(G-T) and poly d(A-T) studied by I.R. spectroscopy. Nucleic Acids Res., 14, 3501-3513.
-
(1986)
Nucleic Acids Res.
, vol.14
, pp. 3501-3513
-
-
Adam, S.1
Bourtayre, P.2
Liquier, J.3
Taillandier, E.4
|