-
1
-
-
36849126204
-
Studies in molecular dynamics. I. General method
-
Alder, B. J., and T. E. Wainwright. 1959. Studies in molecular dynamics. I. General method. J. Chem. Phys. 31:459-466.
-
(1959)
J. Chem. Phys.
, vol.31
, pp. 459-466
-
-
Alder, B.J.1
Wainwright, T.E.2
-
2
-
-
36749107785
-
Molecular dynamics simulations at constant temperature and/or pressure
-
Andersen, H. C. 1980. Molecular dynamics simulations at constant temperature and/or pressure. J. Chem. Phys. 72:2384-2393.
-
(1980)
J. Chem. Phys.
, vol.72
, pp. 2384-2393
-
-
Andersen, H.C.1
-
3
-
-
84946639640
-
Molecular dynamics of rigid and non-rigid necklaces of hard discs
-
Bellemans, A., J. Orban, and D. VanBelle. 1980. Molecular dynamics of rigid and non-rigid necklaces of hard discs. Mol. Phys. 39:781-782.
-
(1980)
Mol. Phys.
, vol.39
, pp. 781-782
-
-
Bellemans, A.1
Orban, J.2
VanBelle, D.3
-
4
-
-
0030853453
-
Polyalanine-based peptides as models for self-associated β-sheet complexes
-
Blondelle, S. E., B. Forood, R. A. Houghten, and E. Perez-Paya. 1997. Polyalanine-based peptides as models for self-associated β-sheet complexes. Biochemistry. 36:8393-8400.
-
(1997)
Biochemistry
, vol.36
, pp. 8393-8400
-
-
Blondelle, S.E.1
Forood, B.2
Houghten, R.A.3
Perez-Paya, E.4
-
5
-
-
0033060450
-
Oculopharyngeal muscular dystrophy
-
Brais, B., G. A. Rouleau, J. P. Bouchard, M. Farde, and F. M. S. Tome. 1999. Oculopharyngeal muscular dystrophy. Semin. Neurol. 19:59-66.
-
(1999)
Semin. Neurol.
, vol.19
, pp. 59-66
-
-
Brais, B.1
Rouleau, G.A.2
Bouchard, J.P.3
Farde, M.4
Tome, F.M.S.5
-
6
-
-
0024359551
-
Thermal stabilities of globular proteins
-
Dill, K. A., D. O. V. Alonzo, and K. Hutchinson. 1989. Thermal stabilities of globular proteins. Biochemistry. 28:5439-5449.
-
(1989)
Biochemistry
, vol.28
, pp. 5439-5449
-
-
Dill, K.A.1
Alonzo, D.O.V.2
Hutchinson, K.3
-
7
-
-
0036228167
-
Exploring protein aggregation and self-propagation using lattice models: Phase diagram and kinetics
-
Dima, R. I., and D. Thirumalai. 2002. Exploring protein aggregation and self-propagation using lattice models: phase diagram and kinetics. Prot. Sci. 11:1036-1049.
-
(2002)
Prot. Sci.
, vol.11
, pp. 1036-1049
-
-
Dima, R.I.1
Thirumalai, D.2
-
8
-
-
0036923039
-
Molecular dynamics simulations of the SH3 domain aggregation suggests a generic amyloidogenesis mechanism
-
Ding, F., N. V. Dokholyan, S. V. Buldyrev, H. E. Stanley, and E. I. Shakhnovich. 2002. Molecular dynamics simulations of the SH3 domain aggregation suggests a generic amyloidogenesis mechanism. J. Mol. Biol. 324:851-857.
-
(2002)
J. Mol. Biol.
, vol.324
, pp. 851-857
-
-
Ding, F.1
Dokholyan, N.V.2
Buldyrev, S.V.3
Stanley, H.E.4
Shakhnovich, E.I.5
-
9
-
-
0141480850
-
Mechanism for the α-helix to β-hairpin transition
-
Ding, F., J. M. Borreguero, S. V. Buldyrey, H. E. Stanley, and N. V. Dokholyan. 2003. Mechanism for the α-helix to β-hairpin transition. Proteins Struct. Funct. Genet. 53:220-228.
-
(2003)
Proteins Struct. Funct. Genet.
, vol.53
, pp. 220-228
-
-
Ding, F.1
Borreguero, J.M.2
Buldyrey, S.V.3
Stanley, H.E.4
Dokholyan, N.V.5
-
10
-
-
0035961329
-
The structural basis of protein folding and its links with human disease
-
Dobson, C. M. 2001. The structural basis of protein folding and its links with human disease. Phil. Trans. R. Soc. Lond. B. 356:133-145.
-
(2001)
Phil. Trans. R. Soc. Lond. B
, vol.356
, pp. 133-145
-
-
Dobson, C.M.1
-
11
-
-
0033863220
-
Activation barriers to structural transition determine deposition rates of Alzheimer's disease Aβ amyloid
-
Esler, W. P., A. M. Felix, E. R. Stimson, M. J. Lacherunann, J. R. Ghilardi, Y. A. Lu, H. V. Vinters, P. W. Mantyh, J. P. Lee, and J. E. Maggio. 2000. Activation barriers to structural transition determine deposition rates of Alzheimer's disease Aβ amyloid. J. Struct. Biol. 130:174-183.
-
(2000)
J. Struct. Biol.
, vol.130
, pp. 174-183
-
-
Esler, W.P.1
Felix, A.M.2
Stimson, E.R.3
Lacherunann, M.J.4
Ghilardi, J.R.5
Lu, Y.A.6
Vinters, H.V.7
Mantyh, P.W.8
Lee, J.P.9
Maggio, J.E.10
-
12
-
-
0037048673
-
Solvent environment conducive to protein aggregation
-
Fernandez, A., and M. D. L. Boland. 2002. Solvent environment conducive to protein aggregation. FEBS Lett. 529:298-302.
-
(2002)
FEBS Lett.
, vol.529
, pp. 298-302
-
-
Fernandez, A.1
Boland, M.D.L.2
-
13
-
-
0031932169
-
Protein aggregation: Folding aggregates, inclusion bodies and amyloid
-
Fink, A. L. 1998. Protein aggregation: folding aggregates, inclusion bodies and amyloid. Fold. Des. 3:R9-23.
-
(1998)
Fold. Des.
, vol.3
-
-
Fink, A.L.1
-
14
-
-
0029010810
-
Formation of an extremely stable polyalanine β-sheet macromolecule
-
Forood, B., E. Perez-Paya, R. A. Houghten, and S. E. Blondelle. 1995. Formation of an extremely stable polyalanine β-sheet macromolecule. Biochem. Biophys. Res. Commun. 211:7-13.
-
(1995)
Biochem. Biophys. Res. Commun.
, vol.211
, pp. 7-13
-
-
Forood, B.1
Perez-Paya, E.2
Houghten, R.A.3
Blondelle, S.E.4
-
15
-
-
0032729982
-
Computationally derived structural models of the β-amyloid found in Alzheimer's disease plaques and the interaction with possible aggregation inhibitors
-
George, A. R., and D. R. Howlett. 1999. Computationally derived structural models of the β-amyloid found in Alzheimer's disease plaques and the interaction with possible aggregation inhibitors. Biopolymers. 50:733-741.
-
(1999)
Biopolymers
, vol.50
, pp. 733-741
-
-
George, A.R.1
Howlett, D.R.2
-
16
-
-
0037627715
-
The role of side-chain interactions in the early steps of aggregation: Molecular dynamics simulations of an amyloid-forming peptide from the yeast prion Sup35
-
Gsponer, J., U. Haberthur, and A. Caflisch. 2003. The role of side-chain interactions in the early steps of aggregation: molecular dynamics simulations of an amyloid-forming peptide from the yeast prion Sup35. Proc. Natl. Acad. Sci. USA. 100:5154-5159.
-
(2003)
Proc. Natl. Acad. Sci. USA
, vol.100
, pp. 5154-5159
-
-
Gsponer, J.1
Haberthur, U.2
Caflisch, A.3
-
17
-
-
0030601851
-
Kinetics and thermodynamics of folding of a de novo designed four-helix bundle protein
-
Guo, Z., and D. Thirumalai. 1996. Kinetics and thermodynamics of folding of a de novo designed four-helix bundle protein. J. Mol. Biol. 263:323-343.
-
(1996)
J. Mol. Biol.
, vol.263
, pp. 323-343
-
-
Guo, Z.1
Thirumalai, D.2
-
18
-
-
0033582587
-
Thermodynamics of model prions and its implications for the problem of prion protein folding
-
Harrison, P. M., H. S. Chan, S. B. Prusiner, and F. E. Cohen. 1999. Thermodynamics of model prions and its implications for the problem of prion protein folding. J. Mol. Biol. 286:593-606.
-
(1999)
J. Mol. Biol.
, vol.286
, pp. 593-606
-
-
Harrison, P.M.1
Chan, H.S.2
Prusiner, S.B.3
Cohen, F.E.4
-
19
-
-
0030728039
-
Deadly conformations-protein misfolding in prion disease
-
Horwich, A. L., and J. S. Weissman. 1997. Deadly conformations-protein misfolding in prion disease. Cell. 89:499-510.
-
(1997)
Cell
, vol.89
, pp. 499-510
-
-
Horwich, A.L.1
Weissman, J.S.2
-
20
-
-
0037259922
-
Supramolecular structure of helical ribbons self-assembled from a β-sheet peptide
-
Hwang, W., D. M. Marini, R. D. Kamm, and S. Zhang. 2003. Supramolecular structure of helical ribbons self-assembled from a β-sheet peptide. J. Chem. Phys. 118:389-397.
-
(2003)
J. Chem. Phys.
, vol.118
, pp. 389-397
-
-
Hwang, W.1
Marini, D.M.2
Kamm, R.D.3
Zhang, S.4
-
21
-
-
0031974669
-
Conformational studies of human islet amyloid peptide using molecular dynamics and simulated annealing methods
-
Dangovan, U., and A. Ramamoorthy. 1998. Conformational studies of human islet amyloid peptide using molecular dynamics and simulated annealing methods. Biopolymers. 45:9-20.
-
(1998)
Biopolymers
, vol.45
, pp. 9-20
-
-
Dangovan, U.1
Ramamoorthy, A.2
-
23
-
-
0346688724
-
Assembly and kinetic folding pathways of a tetrameric β-sheet complex: Molecular dynamics simulations on simplified off-lattice protein models
-
Jang, H., C. K. Hall, and Y. Zhou. 2004a. Assembly and kinetic folding pathways of a tetrameric β-sheet complex: molecular dynamics simulations on simplified off-lattice protein models. Biophys. J. 86:31-49.
-
(2004)
Biophys. J.
, vol.86
, pp. 31-49
-
-
Jang, H.1
Hall, C.K.2
Zhou, Y.3
-
24
-
-
0347364624
-
Thermodynamics and stability of a β-sheet complex: Molecular dynamics simulations on simplified off-lattice protein models
-
Jang, H., C. K. Hall, and Y. Zhou. 2004b. Thermodynamics and stability of a β-sheet complex: molecular dynamics simulations on simplified off-lattice protein models. Prot. Sci. 13:40-53.
-
(2004)
Prot. Sci.
, vol.13
, pp. 40-53
-
-
Jang, H.1
Hall, C.K.2
Zhou, Y.3
-
25
-
-
0032006678
-
The alternative conformations of amyloidogenic proteins and their multi-step assembly pathways
-
Kelly, J. W. 1998. The alternative conformations of amyloidogenic proteins and their multi-step assembly pathways. Curr. Opin. Struct. Biol. 8:101-106.
-
(1998)
Curr. Opin. Struct. Biol.
, vol.8
, pp. 101-106
-
-
Kelly, J.W.1
-
26
-
-
0036238472
-
Towards an understanding of amyloidogenesis
-
Kelly, J. W. 2002. Towards an understanding of amyloidogenesis. Nat. Struct. Biol. 9:323-325.
-
(2002)
Nat. Struct. Biol.
, vol.9
, pp. 323-325
-
-
Kelly, J.W.1
-
27
-
-
0345818833
-
Deciphering the rules of protein folding
-
King, J. 1989. Deciphering the rules of protein folding. Chem. Eng. News. 34: 32-54.
-
(1989)
Chem. Eng. News
, vol.34
, pp. 32-54
-
-
King, J.1
-
28
-
-
0022547855
-
X-ray diffraction from intraneuronal paired helical filaments and extraneuronal amyloid fibers in Alzheimer disease indicates cross-β conformation
-
Kirschner, D. A., C. Abraham, and D. J. Selkoe. 1986. X-ray diffraction from intraneuronal paired helical filaments and extraneuronal amyloid fibers in Alzheimer disease indicates cross-β conformation. Proc. Natl. Acad. Sci. USA. 83:503-507.
-
(1986)
Proc. Natl. Acad. Sci. USA
, vol.83
, pp. 503-507
-
-
Kirschner, D.A.1
Abraham, C.2
Selkoe, D.J.3
-
29
-
-
0035832699
-
Effect of Ala-substitution, N- and C-terminal modification and the presence of counter ions on the structure of amyloid peptide fragment 25-35
-
Kortvelyesi, T., G. Kiss, R. F. Murphy, B. Penke, and S. Lovas. 2001. Effect of Ala-substitution, N- and C-terminal modification and the presence of counter ions on the structure of amyloid peptide fragment 25-35. J. Mol. Struct. 545:215-223.
-
(2001)
J. Mol. Struct.
, vol.545
, pp. 215-223
-
-
Kortvelyesi, T.1
Kiss, G.2
Murphy, R.F.3
Penke, B.4
Lovas, S.5
-
30
-
-
0032514748
-
Temperature dependence of amyloid β-protein fibrillization
-
Kusumoto, Y., A. Lomakin, D. B. Teplow, and G. B. Benedek. 1998. Temperature dependence of amyloid β-protein fibrillization. Proc. Natl. Acad. Sci. USA. 95:12277-12282.
-
(1998)
Proc. Natl. Acad. Sci. USA
, vol.95
, pp. 12277-12282
-
-
Kusumoto, Y.1
Lomakin, A.2
Teplow, D.B.3
Benedek, G.B.4
-
31
-
-
0037176280
-
Dynamics and fluidity of amyloid fibrils: A model of fibrous protein aggregates
-
Lakdawala, A. S., D. M. Morgan, D. C. Liotta, D. G. Lynn, and J. P. Snyder. 2002. Dynamics and fluidity of amyloid fibrils: a model of fibrous protein aggregates. J. Am. Chem. Soc. 124:15150-15151.
-
(2002)
J. Am. Chem. Soc.
, vol.124
, pp. 15150-15151
-
-
Lakdawala, A.S.1
Morgan, D.M.2
Liotta, D.C.3
Lynn, D.G.4
Snyder, J.P.5
-
32
-
-
0033040551
-
An atomic model for the pleated β-sheet structure of Aβ amyloid protofilaments
-
Li, L., T. A. Darden, L. Bartolotti, D. Kominos, and L. G. Pedersen. 1999. An atomic model for the pleated β-sheet structure of Aβ amyloid protofilaments. Biophys. J. 76:2871-2878.
-
(1999)
Biophys. J.
, vol.76
, pp. 2871-2878
-
-
Li, L.1
Darden, T.A.2
Bartolotti, L.3
Kominos, D.4
Pedersen, L.G.5
-
33
-
-
0036784617
-
Molecular dynamics simulations of alanine rich β-sheet oligomers: Insight into amyloid formation
-
Ma, B., and R. Nussinov. 2002a. Molecular dynamics simulations of alanine rich β-sheet oligomers: insight into amyloid formation. Prot. Sci. 11:2335-2350.
-
(2002)
Prot. Sci.
, vol.11
, pp. 2335-2350
-
-
Ma, B.1
Nussinov, R.2
-
35
-
-
0010589011
-
Molecular simulation of the amyloid β-peptide Aβ (1-42) of Alzheimer's disease
-
Mager, P. P. 1998a. Molecular simulation of the amyloid β-peptide Aβ (1-42) of Alzheimer's disease. Mol. Sim. 20:201-222.
-
(1998)
Mol. Sim.
, vol.20
, pp. 201-222
-
-
Mager, P.P.1
-
36
-
-
0031766850
-
Molecular simulation of the primary and secondary structures of the Aβ(1-42)-peptide of Alzheimer's disease
-
Mager, P. P. 1998b. Molecular simulation of the primary and secondary structures of the Aβ(1-42)-peptide of Alzheimer's disease. Med. Res. Rev. 18:403-430.
-
(1998)
Med. Res. Rev.
, vol.18
, pp. 403-430
-
-
Mager, P.P.1
-
37
-
-
0346488919
-
Molecular simulation to aid in the understanding of the Aβ(1-42) peptide of Alzheimer's disease
-
Mager, P. P., R. Reinhardt, and K. Fischer. 2001. Molecular simulation to aid in the understanding of the Aβ(1-42) peptide of Alzheimer's disease. Mol. Sim. 26:367-379.
-
(2001)
Mol. Sim.
, vol.26
, pp. 367-379
-
-
Mager, P.P.1
Reinhardt, R.2
Fischer, K.3
-
38
-
-
0034901811
-
Probing the origins of increased activity of the E22Q Dutch mutant Alzheimer's β-amyloid peptide
-
Massi, F., and J. E. Straub. 2001a. Probing the origins of increased activity of the E22Q Dutch mutant Alzheimer's β-amyloid peptide. Biophys. J. 81:697-709.
-
(2001)
Biophys. J.
, vol.81
, pp. 697-709
-
-
Massi, F.1
Straub, J.E.2
-
39
-
-
0037472829
-
Structural and dynamical analysis of the hydration of the Alzheimer's β-amyloid peptide
-
Massi, F., and J. E. Straub. 2001b. Structural and dynamical analysis of the hydration of the Alzheimer's β-amyloid peptide. J. Comput. Chem. 24:143-153.
-
(2001)
J. Comput. Chem.
, vol.24
, pp. 143-153
-
-
Massi, F.1
Straub, J.E.2
-
40
-
-
0035133048
-
Simulation study of the structure and dynamics of the Alzheimer's amyloid peptide congener in solution
-
Massi, F., J. W. Peng, J. P. Lee, and J. E. Straub. 2001. Simulation study of the structure and dynamics of the Alzheimer's amyloid peptide congener in solution. Biophys. J. 81:31-44.
-
(2001)
Biophys. J.
, vol.81
, pp. 31-44
-
-
Massi, F.1
Peng, J.W.2
Lee, J.P.3
Straub, J.E.4
-
41
-
-
0036081257
-
Charge states rather than propensity for β-structure determine enhanced fibrillogenesis in wild-type Alzheimer's β-amyloid peptide compared to E22Q Dutch mutant
-
Massi, F., D. Klimov, D. Thirumalai, and J. E. Straub. 2002. Charge states rather than propensity for β-structure determine enhanced fibrillogenesis in wild-type Alzheimer's β-amyloid peptide compared to E22Q Dutch mutant. Prot. Sci. 11:1639-1647.
-
(2002)
Prot. Sci.
, vol.11
, pp. 1639-1647
-
-
Massi, F.1
Klimov, D.2
Thirumalai, D.3
Straub, J.E.4
-
42
-
-
0037381819
-
Simulations of human lysozyme: Probing the conformations triggering amyloidosis
-
Moraitakis, G., and J. M. Goodfellow. 2003. Simulations of human lysozyme: probing the conformations triggering amyloidosis. Biophys. J. 84:2149-2158.
-
(2003)
Biophys. J.
, vol.84
, pp. 2149-2158
-
-
Moraitakis, G.1
Goodfellow, J.M.2
-
43
-
-
7244253280
-
Solvent effects on the conformational transition of a model polyalanine peptide
-
Nguyen, H. D., A. J. Marchut, and C. K. Hall. 2004. Solvent effects on the conformational transition of a model polyalanine peptide. Prot. Sci. 13:2909-2924.
-
(2004)
Prot. Sci.
, vol.13
, pp. 2909-2924
-
-
Nguyen, H.D.1
Marchut, A.J.2
Hall, C.K.3
-
44
-
-
9244260521
-
Molecular dynamics simulations of spontaneous fibril formation
-
Nguyen, H. D., and C. K. Hall. 2004. Molecular dynamics simulations of spontaneous fibril formation. Proc. Natl. Acad. Sci. USA. 101:16180-16185.
-
(2004)
Proc. Natl. Acad. Sci. USA
, vol.101
, pp. 16180-16185
-
-
Nguyen, H.D.1
Hall, C.K.2
-
45
-
-
36149044755
-
Molecular dynamics simulation of polymer chains with excluded volume
-
Rapaport, D. C. 1978. Molecular dynamics simulation of polymer chains with excluded volume. J. Phys. A Math. Gen. 11:L213-L217.
-
(1978)
J. Phys. A Math. Gen.
, vol.11
-
-
Rapaport, D.C.1
-
46
-
-
0000439253
-
Molecular dynamics simulation of polymer chains in solution
-
Rapaport, D. C. 1979. Molecular dynamics simulation of polymer chains in solution. J. Chem. Phys. 71:3299-3303.
-
(1979)
J. Chem. Phys.
, vol.71
, pp. 3299-3303
-
-
Rapaport, D.C.1
-
48
-
-
0034272188
-
Temperature dependence of hydrophobic interactions: A mean force perspective, effects of water density, and nonadditivity of thermodynamic signatures
-
Shimizu, S., and H. S. Chan. 2000. Temperature dependence of hydrophobic interactions: a mean force perspective, effects of water density, and nonadditivity of thermodynamic signatures. J. Chem. Phys. 113: 4683-4700.
-
(2000)
J. Chem. Phys.
, vol.113
, pp. 4683-4700
-
-
Shimizu, S.1
Chan, H.S.2
-
49
-
-
0028265912
-
Secondary structure of amyloid β peptide correlates with neurotoxic activity in vitro
-
Simmons, L., P. May, K. Tomaselli, R. Rydel, K. Fuson, E. Brigham, S. Wright, I. Lieberburg, G. Becker, D. Brems, and W. Li. 1994. Secondary structure of amyloid β peptide correlates with neurotoxic activity in vitro. Mol. Pharma. 45:373-379.
-
(1994)
Mol. Pharma
, vol.45
, pp. 373-379
-
-
Simmons, L.1
May, P.2
Tomaselli, K.3
Rydel, R.4
Fuson, K.5
Brigham, E.6
Wright, S.7
Lieberburg, I.8
Becker, G.9
Brems, D.10
Li, W.11
-
50
-
-
0035882559
-
Alpha-helix formation: Discontinuous molecular dynamics on an intermediate-resolution protein model
-
Smith, A. V., and C. K. Hall. 2001a. Alpha-helix formation: discontinuous molecular dynamics on an intermediate-resolution protein model. Proteins Struct. Funct. Genet. 44:344-360.
-
(2001)
Proteins Struct. Funct. Genet.
, vol.44
, pp. 344-360
-
-
Smith, A.V.1
Hall, C.K.2
-
51
-
-
0035882537
-
Assembly of a tetrameric α-helical bundle: Computer simulations on an intermediate-resolution protein model
-
Smith, A. V., and C. K. Hall. 2001b. Assembly of a tetrameric α-helical bundle: computer simulations on an intermediate-resolution protein model. Proteins Struct. Funct. Genet. 44:376-391.
-
(2001)
Proteins Struct. Funct. Genet.
, vol.44
, pp. 376-391
-
-
Smith, A.V.1
Hall, C.K.2
-
52
-
-
0035823222
-
Protein refolding versus aggregation: Computer simulations on an intermediate-resolution protein model
-
Smith, A. V., and C. K. Hall. 2001c. Protein refolding versus aggregation: computer simulations on an intermediate-resolution protein model. J. Mol. Biol. 312:187-202.
-
(2001)
J. Mol. Biol.
, vol.312
, pp. 187-202
-
-
Smith, A.V.1
Hall, C.K.2
-
53
-
-
0031161658
-
Molecular dynamics for polymeric fluids using discontinuous potentials
-
Smith, S. W., C. K. Hall, and B. D. Freeman. 1997. Molecular dynamics for polymeric fluids using discontinuous potentials. J. Comp. Phys. 134: 16-30.
-
(1997)
J. Comp. Phys.
, vol.134
, pp. 16-30
-
-
Smith, S.W.1
Hall, C.K.2
Freeman, B.D.3
-
54
-
-
0036280438
-
Long time dynamic simulations: Exploring the folding pathways of an Alzheimer's amyloid Aβ-peptide
-
Straub, J. E., J. Guevara, S. Huo, and J. P. Lee. 2002. Long time dynamic simulations: exploring the folding pathways of an Alzheimer's amyloid Aβ-peptide. Acc. Chem. Res. 35:473-481.
-
(2002)
Acc. Chem. Res.
, vol.35
, pp. 473-481
-
-
Straub, J.E.1
Guevara, J.2
Huo, S.3
Lee, J.P.4
-
55
-
-
0001616080
-
Replica-exchange molecular dynamics method for protein folding
-
Sugita, Y., and Y. Okamoto. 1999. Replica-exchange molecular dynamics method for protein folding. Chem. Phys. Lett. 314:141-151.
-
(1999)
Chem. Phys. Lett.
, vol.314
, pp. 141-151
-
-
Sugita, Y.1
Okamoto, Y.2
-
56
-
-
0030801746
-
The structure of amyloid fibrils by electron microscopy and x-ray diffraction
-
Sunde, M., and C. Blake. 1997. The structure of amyloid fibrils by electron microscopy and x-ray diffraction. Adv. Prot. Chem. 50:123-159.
-
(1997)
Adv. Prot. Chem.
, vol.50
, pp. 123-159
-
-
Sunde, M.1
Blake, C.2
-
57
-
-
0028298127
-
Mutations and off-pathway aggregation of proteins
-
Wetzel, R. 1994. Mutations and off-pathway aggregation of proteins. Trends Biotech. 12:193-198.
-
(1994)
Trends Biotech.
, vol.12
, pp. 193-198
-
-
Wetzel, R.1
-
58
-
-
0037907526
-
55 transthyretin variant the most amyloidogenic: Insights from molecular dynamics simulations of transthyretin monomers
-
55 transthyretin variant the most amyloidogenic: insights from molecular dynamics simulations of transthyretin monomers. Prot. Sci. 12:1222-1231.
-
(2003)
Prot. Sci.
, vol.12
, pp. 1222-1231
-
-
Yang, M.1
Lei, M.2
Huo, S.3
-
59
-
-
0038274079
-
The sequence dependence of fiber organization. A comparative molecular dynamics study of the islet amyloid polypeptide segments 22-27 and 22-29
-
Zanuy, D., and R. Nussinov. 2003. The sequence dependence of fiber organization. A comparative molecular dynamics study of the islet amyloid polypeptide segments 22-27 and 22-29. J. Mol. Biol. 329:565-584.
-
(2003)
J. Mol. Biol.
, vol.329
, pp. 565-584
-
-
Zanuy, D.1
Nussinov, R.2
-
60
-
-
0037339326
-
Short peptide amyloid organization: Stabilities and conformations of the islet amyloid peptide NFGAIL
-
Zanuy, D., B. Ma, and R. Nussinov. 2003. Short peptide amyloid organization: stabilities and conformations of the islet amyloid peptide NFGAIL. Biophys. J. 84:1884-1894.
-
(2003)
Biophys. J.
, vol.84
, pp. 1884-1894
-
-
Zanuy, D.1
Ma, B.2
Nussinov, R.3
-
61
-
-
0036377156
-
Amyloid-fibril formation. Proposed mechanisms and relevance to conformational disease
-
Zerovnik, E. 2002. Amyloid-fibril formation. Proposed mechanisms and relevance to conformational disease. Eur. J. Biochem. 269:3362-3371.
-
(2002)
Eur. J. Biochem.
, vol.269
, pp. 3362-3371
-
-
Zerovnik, E.1
-
62
-
-
0001015060
-
Equilibrium thermodynamics of homopolymers and clusters: Molecular dynamics and Monte Carlo simulations of systems with square-well interactions
-
Zhou, Y., M. Karplus, J. M. Wiehert, and C. K. Hall. 1997. Equilibrium thermodynamics of homopolymers and clusters: molecular dynamics and Monte Carlo simulations of systems with square-well interactions. J. Chem. Phys. 107:10691-10708.
-
(1997)
J. Chem. Phys.
, vol.107
, pp. 10691-10708
-
-
Zhou, Y.1
Karplus, M.2
Wiehert, J.M.3
Hall, C.K.4
|