-
1
-
-
0031626723
-
Statistical significance of ungapped alignments
-
eds. R. Altman, A. Dunker, L. Hunter, T. Klein)
-
N. N. Alexandrov and V. V. Solovyev. Statistical significance of ungapped alignments. Pacific Symposium on Biocomputing (PSB-98), (eds. R. Altman, A. Dunker, L. Hunter, T. Klein), pages 463-472, 1998.
-
(1998)
Pacific Symposium on Biocomputing (PSB-98
, pp. 463-472
-
-
Alexandrov, N.N.1
Solovyev, V.V.2
-
2
-
-
0022885515
-
Locally optimal subalignments using nonlinear similarity functions
-
S. F. Altschul and B. W. Erickson. Locally optimal subalignments using nonlinear similarity functions. Bulletin of Mathematical Biology, 48:633-660, 1986.
-
(1986)
Bulletin of Mathematical Biology
, vol.48
, pp. 633-660
-
-
Altschul, S.F.1
Erickson, B.W.2
-
3
-
-
0023820293
-
Significance levels for biological sequence comparison using nonlinear similarity functions
-
S. F. Altschul and B. W. Erickson. Significance levels for biological sequence comparison using nonlinear similarity functions. Bulletin of Mathematical Biology, 50:77-92, 1988.
-
(1988)
Bulletin of Mathematical Biology
, vol.50
, pp. 77-92
-
-
Altschul, S.F.1
Erickson, B.W.2
-
4
-
-
0030801002
-
Gapped blast and psi-blast: A new generation of protein database search programs
-
S. F. Altschul, T. L. Madden, A. A. Schaffer, J. Zhang, Z. Zhang, W. Miller, and D. J. Lipman. Gapped Blast and Psi-Blast: a new generation of protein database search programs. Nucleic Acids Research, 25:3389-3402, 1997.
-
(1997)
Nucleic Acids Research
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schaffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
5
-
-
0035021688
-
A new approach to sequence comparison: Normalized local alignment
-
A. N. Arslan, O. Egecioglu, and P. A. Pevzner. A new approach to sequence comparison: Normalized local alignment. Bioinformatics, 17(4):327-337, 2001.
-
(2001)
Bioinformatics
, vol.17
, Issue.4
, pp. 327-337
-
-
Arslan, A.N.1
Egecioglu, O.2
Pevzner, P.A.3
-
6
-
-
0027840782
-
Applications of approximate string matching to 2d shape recognition
-
H. Bunke and U. Biihler. Applications of approximate string matching to 2d shape recognition. Pattern Recognition, 26(12):1797-1812, 1993.
-
(1993)
Pattern Recognition
, vol.26
, Issue.12
, pp. 1797-1812
-
-
Bunke, H.1
Biihler, U.2
-
7
-
-
0346968317
-
An improved algorithm for solving the banded cyclic string-to-string correction problem
-
K-L. Chung. An improved algorithm for solving the banded cyclic string-to-string correction problem. Theoretical Computer Science, 201:275-279, 1998.
-
(1998)
Theoretical Computer Science
, vol.201
, pp. 275-279
-
-
Chung, K.-L.1
-
8
-
-
0018318610
-
Size normalization and pattern orientation problems in syntactics clustering
-
K. S. Fu and S. Y. Lu. Size normalization and pattern orientation problems in syntactics clustering. IEEE Trans. Systems Man Cybernet, 9:55-58, 1979.
-
(1979)
IEEE Trans. Systems Man Cybernet
, vol.9
, pp. 55-58
-
-
Fu, K.S.1
Lu, S.Y.2
-
10
-
-
0030190375
-
Efficient dynamic programming alignment of cyclic shifts by shift elimination
-
J. Gregor and M. G. Thomason. Efficient dynamic programming alignment of cyclic shifts by shift elimination. Pattern Recognition, 29(7): 1179-1185, 1996.
-
(1996)
Pattern Recognition
, vol.29
, Issue.7
, pp. 1179-1185
-
-
Gregor, J.1
Thomason, M.G.2
-
11
-
-
44949272730
-
A time-efficient, linear-space local similarity algorithm
-
X. Huang and W. Miller. A time-efficient, linear-space local similarity algorithm. Advances in Applied Mathematics, 12:337-357, 1991.
-
(1991)
Advances in Applied Mathematics
, vol.12
, pp. 337-357
-
-
Huang, X.1
Miller, W.2
-
12
-
-
0001282046
-
Incremental string comparison
-
G. M. Landau, E. W. Myers, and J. P. Schmidt. Incremental string comparison. Siam J. Comput., 27(2):557-582, 1998.
-
(1998)
Siam J. Comput
, vol.27
, Issue.2
, pp. 557-582
-
-
Landau, G.M.1
Myers, E.W.2
Schmidt, J.P.3
-
13
-
-
0025437146
-
On a cyclic string-to-string correction problem
-
M. Maes. On a cyclic string-to-string correction problem. Information Processing Letters, 35:73-78, 1990.
-
(1990)
Information Processing Letters
, vol.35
, pp. 73-78
-
-
Maes, M.1
-
14
-
-
0019887799
-
The identification of common molecular subsequences
-
T. F. Smith and M. S. Waterman. The identification of common molecular subsequences, J. of Molecular Biology, 147:195-197, 1981.
-
(1981)
J. of Molecular Biology
, vol.147
, pp. 195-197
-
-
Smith, T.F.1
Waterman, M.S.2
-
15
-
-
0033370743
-
A simple algorithm for detecting circular permutations in proteins
-
S. Uliel, A. Fliess, A. Amir, and R. Unger. A simple algorithm for detecting circular permutations in proteins. Bioinformatics, 15(ll):930-936, 1999.
-
(1999)
Bioinformatics
, vol.15
, pp. 930-936
-
-
Uliel, S.1
Fliess, A.2
Amir, A.3
Unger, R.4
-
16
-
-
0015960104
-
The string-to-string correction problem
-
R. A. Wagner and M. J. Fisher. The string-to-string correction problem. J. Assoc. Comput. Mach., 21(1):168-173, 1974.
-
(1974)
J. Assoc. Comput. Mach
, vol.21
, Issue.1
, pp. 168-173
-
-
Wagner, R.A.1
Fisher, M.J.2
-
18
-
-
0023661088
-
A new algorithm for best subsequence alignments with application to tRNA-rRNA comparisons
-
M. S. Waterman and M. Eggert A new algorithm for best subsequence alignments with application to tRNA-rRNA comparisons. J. Comput. Biol., 197:723-728, 1987.
-
(1987)
J. Comput. Biol
, vol.197
, pp. 723-728
-
-
Waterman, M.S.1
Eggert, M.2
-
19
-
-
0031927028
-
Alignments without low-scoring regions
-
Z. Zhang, P. Berman, and W. Miller. Alignments without low-scoring regions. J. Comput. Biol, 5:197-200, 1998.
-
(1998)
J. Comput. Biol
, vol.5
, pp. 197-200
-
-
Zhang, Z.1
Berman, P.2
Miller, W.3
-
20
-
-
0033492834
-
Post-processing long pairwise alignments
-
Z. Zhang, P. Berman, T. Wiehe, and W. Miller. Post-processing long pairwise alignments. Bioinformatics, 15:1012-1019, 1999.
-
(1999)
Bioinformatics
, vol.15
, pp. 1012-1019
-
-
Zhang, Z.1
Berman, P.2
Wiehe, T.3
Miller, W.4
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