Infectious molecular clone of a recently transmitted pediatric human immunodeficiency virus clade C isolate from Africa: Evidence of intraclade recombination

Journal of Virology

Volumn 78, Issue 24, 2004, Pages 14066-14069

  Grisson, Ricky D ^a,b   Chenine, Agnès Laurence ^a,b   Yeh, Lan Yu ^a   He, Jun ^c   Wood, Charles ^c   Bhat, Ganapati J ^d   Xu, Weidong ^a,b   Kankasa, Chipepo ^d   Ruprecht, Ruth M ^a,b  

^a DANA FARBER CANCER INSTITUTE   (United States)

^b HARVARD MEDICAL SCHOOL   (United States)

^c UNIVERSITY OF NEBRASKA   (United States)

^d UNIVERSITY TEACHING HOSPITAL   (Zambia)

Author keywords

[No Author keywords available]

Indexed keywords

GAG PROTEIN; IMMUNOGLOBULIN ENHANCER BINDING PROTEIN; POL PROTEIN; VIRUS DNA; VIRUS ENVELOPE PROTEIN;

ARTICLE; CASE REPORT; CLADISTICS; ENZYME LINKED IMMUNOSORBENT ASSAY; GENETIC RECOMBINATION; HUMAN; HUMAN IMMUNODEFICIENCY VIRUS 1; INFANT; LONG TERMINAL REPEAT; MOLECULAR CLONING; NUCLEOTIDE SEQUENCE; PERIPHERAL BLOOD MONONUCLEAR CELL; PHYLOGENY; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; PROVIRUS; VACCINE PRODUCTION; VIRUS ISOLATION; ZAMBIA;

AMINO ACID SEQUENCE; CELL LINE; CLONING, MOLECULAR; HIV INFECTIONS; HIV-1; HUMANS; INFANT; MOLECULAR SEQUENCE DATA; PHYLOGENY; RECOMBINATION, GENETIC; SEQUENCE ANALYSIS, DNA; ZAMBIA;

EID: 10044223604     PISSN: 0022538X     EISSN: None     Source Type: Journal    
DOI: 10.1128/JVI.78.24.14066-14069.2004     Document Type: Article

References (25)

1. de Roda Husman, A. M., and H. Schuitemaker. 1998. Chemokine receptors and the clinical course of HIV-1 infection. Trends Microbiol. 6:244-249.
2. Esparza, J., and N. Bhamarapravati. 2000. Accelerating the development and future availability of HIV-1 vaccines: why, when, where and how? Lancet 335:2061-2066.
3. Gao, F., D. L. Robertson, C. D. Carruthers, S. G. Morrison, B. Jian, Y. Chen, F. Barre-Sinoussi, M. Girard, A. Srinivasan, A. G. Abimiku, G. M. Shaw, P. M. Sharp, and B. H. Hahn. 1998. A comprehensive panel of near-full-length clones and reference sequences for non-subtype B isolates of human immunodeficiency virus type 1. J. Virol. 72:5680-5698.
4. Handema, R., H. Terunuma, F. Kasolo, H. Kasai, M. Sichone, G. Mulundu, X. Deng, K. Ichiyama, S. Mitarai, M. Honda, N. Yamamoto, and M. Ho. 2001. Emergence of new HIV-1 subtypes other than subtype C among antenatal women in Lusaka, Zambia. AIDS Res. Hum. Retrovir. 17:759-763.
5. Jeeninga, R. E., M. Hoogenkamp, M. Armand-Ugon, M. de Baar, K. Verhoef, and B. Berkhout. 2000. Functional differences between the long terminal repeat transcriptional promoters of human immunodeficiency virus type 1 subtypes A through G. J. Virol. 74:3740-3751.
6. Kalinkovich, A., Z. Weisman, and Z. Bentwich. 1999. Chemokines and chemokine receptors: role in HIV infection. Immunol. Lett. 68:281-287.
7. Kusagawa, S., Y. Takebe, R. Yang, K. Motomura, W. Ampofo, J. Brandful, Y. Koyanagi, N. Yamamoto, T. Sata, K. Ishikawa, Y. Nagai, and M. Tatsumi. 2001. Isolation and characterization of a full-length molecular DNA clone of Ghanaian HIV type 1 intersubtype A/G recombinant CRF02_AG, which is replication competent in a restricted host range. AIDS Res. Hum. Retrovir. 17:649-655.
8. Kusagawa, S., H. Sato, Y. Tomita, M. Tatsumi, K. Kato, K. Motomura, R. Yang, and Y. Takebe. 2002. Isolation and characterization of replication-competent molecular DNA clones of HIV type 1 CRF01_AE with different coreceptor usages. AIDS Res. Hum. Retrovir. 18:115-122.
9. Mochizuki, N., N. Otsuka, K. Matsuo, T. Shiino, A. Kojima, T. Kurata, K. Sakai, N. Yamamoto, S. Isomura, T. N. Dhole, Y. Takebe, M. Matsuda, and M. Tatsumi. 1999. An infectious DNA clone of HIV type 1 subtype C. AIDS Res. Hum. Retrovir. 15:1321-1324.
10. Montano, M. A., C. P. Nixon, T. Ndung'u, H. Bussmann, V. A. Novitsky, D. Dickman, and M. Essex. 2000. Elevated tumor necrosis factor-alpha activation of human immunodeficiency virus type 2 subtype C in Southern Africa is associated with an NF-kappaB enhancer gain-of-function. J. Infect. Dis. 181:76-81.
11. Mukai, T., S. Komoto, T. Kurosu, J. A. Palacios, Y. G. Li, W. Auwanit, M. Tatsumi, and K. Ikuta. 2002. Construction and characterization of an infectious molecular clone derived from the CRF01_AE primary isolate of HIV type 1. AIDS Res. Hum. Retrovir. 18:585-589.
12. Ndung'u, T., B. Renjifo, and M. Essex. 2001. Construction and analysis of an infectious human immunodeficiency virus type 1 subtype C molecular clone. J. Virol. 75:4964-4972.
13. Novelli, P., C. Vella, J. Oxford, and R. S. Daniels. 2000. Construction and biological characterization of an infectious molecular clone of HIV type 1GB8. AIDS Res. Hum. Retrovir. 16:1175-1178.
14. Novelli, P., C. Vella, J. Oxford, and R. S. Daniels. 2002. Construction and characterization of a full-length HIV-1(92UG001) subtype D infectious molecular clone. AIDS Res. Hum. Retrovir. 18:85-88.
15. Novitsky, V. A., M. A. Montano, M. F. McLane, B. Renjifo, F. Vannberg, B. T. Foley, T. P. Ndung'u, M. Rahman, M. J. Makhema, R. Marlink, and M. Essex. 1999. Molecular cloning and phylogenetic analysis of human immunodeficiency virus type 1 subtype C: a set of 23 full-length clones from Botswana. J. Virol. 73:4427-4432.
16. Osmanov, S., C. Pattou, N. Walker, B. Schwardlander, and J. Esparza. 2002. Estimated global distribution and regional spread of HIV-1 genetic subtypes in the year 2000. J. Acquir. Immune Defic. Syndr. 29:184-190.
17. Papathanasopoulos, M. A., T. Cilliers, L. Morris, J. L. Mokili, W. Dowling, D. L. Birx, and F. E. McCutchan. 2002. Full-length genome analysis of HIV-1 subtype C utilizing CXCR4 and intersubtype recombinants isolated in South Africa. AIDS Res. Hum. Retrovir. 18:879-886.
18. Peeters, M., and P. M. Sharp. 2000. Genetic diversity of HIV-1: the moving target. AIDS 14(Suppl. 3):S129-S140.
19. Rodenburg, C. M., Y. Li, S. A. Trask, Y. Chen, J. Decker, D. L. Robertson, M. L. Kalish, G. M. Shaw, S. Allen, B. H. Hahn, and F. Gao. 2001. Near full-length clones and reference sequences for subtype C isolates of HIV type 1 from three different continents. AIDS Res. Hum. Retrovir. 17:161-168.
20. Roof, P., M. Ricci, P. Genin, M. A. Montano, M. Essex, M. A. Wainberg, A. Gatignol, and J. Hiscott. 2002. Differential regulation of HIV-1 clade-specific B, C, and E long terminal repeats by NF-kappaB and the Tat transactivator. Virology 296:77-83.
21. Salminen, M. O., P. K. Ehrenberg, J. R. Mascola, D. E. Dayhoff, R. Merling, B. Blake, M. Louder, S. Hegerich, V. R. Polonis, D. L. Birx, M. L. Robb, F. E. McCutchan, and N. L. Michael. 2000. Construction and biological characterization of infectious molecular clones of HIV-1 subtypes B and E (CRF01_AE) generated by the polymerase chain reaction. Virology 278:103-110.
22. Takahoko, M., M. Tobiume, K. Ishikawa, W. Ampofo, N. Yamamoto, M. Matsuda, and M. Tatsumi. 2001. Infectious DNA clone of HIV type 1 A/G recombinant (CRF02_AG) replicable in peripheral blood mononuclear cells. AIDS Res. Hum. Retrovir. 17:1083-1087.
23. Trask, S. A., C. A. Derdeyn, U. Fideli, Y. Chen, S. Meleth, F. Kasolo, R. Musonda, E. Hunter, F. Gao, S. Allen, and B. H. Hahn. 2002. Molecular epidemiology of human immunodeficiency virus type 1 transmission in a heterosexual cohort of discordant couples in Zambia. J. Virol. 76:397-405.
24. Xu, W., B. A. Smith-Franklin, P.-L. Li, C. Wood, J. He, Q. Du, G. J. Bhat, C. Kankasa, H. Katinger, L. A. Cavacini, M. P. Posner, D. R. Burton, T.-C. Chou, and R. M. Ruprecht. 2001. Potent neutralization of primary human immunodeficiency virus clade C isolates with a synergistic combination of human monoclonal antibodies raised against clade B. J. Hum. Virol. 4:55-61.
25. Zhang, H., G. Orti, Q. Du, J. He, C. Kankasa, G. Bhat, and C. Wood. 2002. Phylogenetic and phenotypic analysis of HIV type 1 env gp120 in cases of subtype C mother-to-child transmission. AIDS Res. Hum. Retrovir. 18:1415-1423.