Genetic Analysis of Pseudomonas aeruginosa by Enterobacterial Repetitive Intergenic Consensus Polymerase Chain Reaction (PCR) and Arbitrarily Primed PCR: Gel Analysis Compared with Microchip Gel Electrophoresis

Infection Control and Hospital Epidemiology

Volumn 25, Issue 1, 2004, Pages 65-71

  Jamasbi, Roudabeh J ^a   Kennel, Stephen J ^b   Waters, Larry C ^b   Foote, Linda J ^b   Ramsey, J Michael ^b  

^a BOWLING GREEN STATE UNIVERSITY   (United States)

^b OAK RIDGE NATIONAL LABORATORY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

AGAROSE; BACTERIAL DNA; MONOCLONAL ANTIBODY; PRIMER DNA; REPETITIVE DNA; SPACER DNA;

ARBITRARILY PRIMED POLYMERASE CHAIN REACTION; ARTICLE; BACTERIUM IDENTIFICATION; DNA DETERMINATION; DNA FINGERPRINTING; DNA MICROARRAY; ENTEROBACTERIAL REPETITIVE INTERGENIC CONSENSUS POLYMERASE CHAIN REACTION; ENZYME LINKED IMMUNOSORBENT ASSAY; GEL ELECTROPHORESIS; GENETIC ANALYSIS; INTERMETHOD COMPARISON; LABORATORY AUTOMATION; MICROBIOLOGICAL EXAMINATION; MICROCHIP GEL ELECTROPHORESIS; MOLECULAR PHYLOGENY; NONHUMAN; POLYMERASE CHAIN REACTION; PSEUDOMONAS AERUGINOSA; SEROTYPING;

BACTERIAL TYPING TECHNIQUES; DNA FINGERPRINTING; ELECTROPHORESIS; ELECTROPHORESIS, AGAR GEL; HUMANS; POLYMERASE CHAIN REACTION; PSEUDOMONAS AERUGINOSA; REPRODUCIBILITY OF RESULTS; SENSITIVITY AND SPECIFICITY;

EID: 0942287840     PISSN: 0899823X     EISSN: None     Source Type: Journal    
DOI: 10.1086/502295     Document Type: Article

References (33)

1. Boukadida J, Montolenbert M, Gaillard JL, Berche P. Outbreak of gut colonization by Pseudomonas aeruginosa in immunocompromised children undergoing total digestive decontamination: analysis by pulsed-field electrophoresis. J Clin Microbiol 1991;29:2068-2071.
2. Kielhofner M, Almar RL, Hamill RL, Musher DM. Life-threatening Pseudomonas aeruginosa infections in patients with human immunodeficiency virus infections. Clin Infect Dis 1992;14:403-411.
3. Shepp DH, Tang IT, Ramundo MB, Kaplan MH. Serious Pseudomonas aeruginosa infection in AIDS. J Acquir Immune Defic Syndr 1994;7:823-831.
4. Wiblin RT. Nosocomial pneumonia. In: Wenzel RP, ed. Prevention and Control of Nosocomial Infections, ed. 3. Baltimore: Williams & Wilkins; 1997:807-819.
5. Pollack M. Pseudomonas aeruginosa. In: Mandell GL, Benet JE, Dolin R, eds. Principles and Practice of Infections Diseases, ed. 4. New York: Churchill Livingston; 1995:1980-2003.
6. Gordon SM, Serkey JM, Keys TF, et al. Secular trends in nosocomial bloodstream infections in a 55-bed cardiothoracic intensive care unit. Ann Thorac Surg 1998;65:95-100.
7. Kluytmans J. Surgical infections including burns. In: Wenzel RP, ed. Prevention and Control of Nosocomial Infections, ed. 3. Baltimore: Williams & Wilkins; 1997:841-865.
8. Masuda N, Sakagawa E, Ohya S. Outer membrane proteins responsible for multiple drug resistance in Pseudomonas aeruginosa. Antimicrob Agents Chemother 1995;39:645-649.
9. Liu PV. Changes in somatic antigens of P. aeruginosa induced by bacteriophages. J Infect Dis 1969;119:237-246.
10. Pitt TL. Epidemiological typing of Pseudomonas aeruginosa. Eur J Clin Microbiol Infect Dis 1988;7:238-247.
11. Poh CL, Yeo CC. Recent advances in typing of Pseudomonas aeruginosa. J Hosp Infect 1993;24:175-181.
12. Liu PV, Matsumoto H, Kusama H, Bergan T. Survey of heat-stable major somatic antigens of Pseudomonas aeruginosa. Int J Syst Bacteriol 1983;33:256-264.
13. Liu PV, Wang S. Three new major somatic antigens of Pseudomonas aeruginosa. J Clin Microbiol 1990;28:922-925.
14. Jamasbi RJ. Frequency and distribution of Pseudomonas aeruginosa serotypes 0:3, 0:6, 0:11 in three northwestern Ohio hospitals as determined by ELISA using specific monoclonal antibodies. Ohio Journal of Science 1999;99:10-15.
15. Lam JS, MacDonald LA, Lam MYC. Production of monoclonal antibodies against serotype strains of Pseudomonas aeruginosa. Infect Immun 1987;55:2854-2856.
16. Welsh J, McClelland M. Fingerprinting genomes using PCR with arbitrary primers. Nucleic Acids Res 1990;18:7213-7218.
17. Hernandez J, Ferrus MA, Hernandez M, Owen RJ. Arbitrary primed PCR fingerprinting and serotyping of clinical Pseudomonas aeruginosa strains. FEMS Immunol Med Microbiol 1997;17:37-47.
18. Lau YJ, Liu PYF, Hu BS, et al. DNA fingerprinting of Pseudomonas aeruginosa serotype 0:11 by enterobacterial repetitive intergenic consensus-polymerase chain reaction and pulsed-field gel electrophoresis. J Hosp Infect 1995;31:61-66.
19. Nociari MM, Catalano M, Garcia DC, Copenhaver SC, Vasil ML, Sordelli DO. Comparative usefulness of ribotyping, exotoxin A genotyping, and SalI restriction fragment length polymorphism analysis for Pseudomonas aeruginosa lineage assessment. Diagn Microbiol Infect Dis 1996;24:179-190.
20. Waters LC, Jacobson SC, Kroutchinina N, Khandurina J, Foote RS, Ramsey JM. Microchip device for cell lysis, multiplex PCR amplification, and electrophoretic sizing. Anal Chem 1998;70:158-162.
21. Waters LC, Jacobson SC, Kroutchinina N, Khandurina J, Foote RS, Ramsey JM. Multiple sample PCR amplification and electrophoretic analysis on a microchip. Anal Chem 1998;70:5172-5176.
22. Hjerten S. Capillary coating with linear p olyacrylamide for protein separation. J Chromatogr 1985;347:191.
23. Jacobson SC, Hergenröder R, Koutny LB, Warmack RJ, Ramsey JM. Effects of injection schemes and column geometry on the performance of microchip electrophoresis devices. Anal Chem 1994;66:1107-1113.
24. Jacobson SC, Ramsey JM. Integrated microdevice for DNA restriction fragment analysis. Anal Chem 1996;68:720-723.
25. Pitt TL, MacDougal TLJ, Penkothm ARL, Cooke EM. Polyagglutinating and non-typable strains of Pseudomonas aeruginosa in cystic fibrosis. J Med Microbiol 1996;21:179-186.
26. Kersulyte D, Struelens MJ, Deplano A, Berg DE. Comparison of arbitrarily primed PCR and macrorestriction (pulsed-field gel electrophoresis) typing of Pseudomonas aeruginosa strains from cystic fibrosis patients. J Microbiol 1995;33:2216-2219.
27. Olive DM, Bean P. Principal and application of methods for DNA-based typing of microbial organisms. J Clin Microbiol 1999;37:1661-1669.
28. Webster CA, Towner KJ, Humphreys H, Ehrenstein B, Harutng D, Grundman H. Comparison of rapid automated laser fluorescence analysis of DNA fingerprints with four other computer-assisted approaches for studying relationships between Acinetobacter baumannii isolates. J Med Microbiol 1996;44:185-194.
29. Bej AK, Mahbubani MH, Dicesare JL, Atlas RM. Polymerase chain reactions-gene probe detection of microorganisms by using filter-concentrated samples. Appl Environ Microbiol 1991;57:3529-3534.
30. Way JS, Josephson KL, Pillai SD, Abbazadegan M, Gerba CP, Pepper IL. Specific detection of Salmonella spp. by multiplex polymerase chain reaction. Appl Environ Microbiol 1993;59:1473-1479.
31. Ronai Z, Barta C, Sasvari-Szekely M, Guttman A. DNA analysis on electrophoretic microchips: effect of operational variables. Electrophoresis 2001;22:294-299.
32. Tian H, Hühmer AFR, Landers JP. Evaluation of silica resins for direct and efficient extraction of DNA from complex biological matrices in a miniaturized format. Anal Biochem 2000;283:175-191.
33. Tian H, Janquins-Gerst A, Munro N, Turcco M, Brody LC, Landers JP. Single-strand conformation polymorphism analysis by capillary and microchip electrophoresis: a fast, simple method for detection of common mutation in BRACA1, and BRAC2. Genomics 2000;63:25-34.