Current and historical patterns of drainage connectivity in eastern Australia inferred from population genetic structuring in a widespread freshwater fish Pseudomugil signifer (Pseudomugilidae)

Molecular Ecology

Volumn 13, Issue 2, 2004, Pages 391-401

  Wong, B B M ^a   Keogh, J S ^a   McGlashan, D J ^b  

^a AUSTRALIAN NATIONAL UNIVERSITY   (Australia)

^b GRIFFITH UNIVERSITY   (Australia)

Author keywords

ATP synthase six; Biogeography; Dispersal; Mitochondrial DNA; Phylogeny; River

Indexed keywords

PROTON TRANSPORTING ADENOSINE TRIPHOSPHATE SYNTHASE;

ANIMAL; ANIMAL BEHAVIOR; ARTICLE; AUSTRALIA; BIOLOGICAL MODEL; COMPARATIVE STUDY; DNA SEQUENCE; GENETICS; GEOGRAPHY; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; PHYLOGENY; PHYSIOLOGY; POPULATION GENETICS; RIVER; SMEGMAMORPHA;

ANIMALS; AUSTRALIA; BASE SEQUENCE; GENETICS, POPULATION; GEOGRAPHY; HOMING BEHAVIOR; MITOCHONDRIAL PROTON-TRANSLOCATING ATPASES; MODELS, GENETIC; MOLECULAR SEQUENCE DATA; PHYLOGENY; RIVERS; SEQUENCE ANALYSIS, DNA; SMEGMAMORPHA;

ANIMALIA; NEMOPHILA; PISCES; PSEUDOMUGIL; PSEUDOMUGIL SIGNIFER; PSEUDOMUGILIDAE; SMEGMAMORPHA;

EID: 0942267967     PISSN: 09621083     EISSN: None     Source Type: Journal    
DOI: 10.1046/j.1365-294X.2003.02085.x     Document Type: Article

References (55)

1. Alfaro ME, Zoller S, Lutzoni F (2003) Bayes or bootstrap? A simulation study comparing the performance of Bayesian Markov chain Monte Carlo sampling and bootstrapping in assessing phylogenetic confidence. Molecular Biology and Evolution, 20, 255-266.
2. Allen GR, Ivantsoff W (1982) Pseudomugil mellis, le honey blue-eye, une nouvelle espèce de poisson arc-en-ciel (Melanotaeniidae) d'Australie orientale. Revenue Française D'aquariotogie, 9, 83-86.
3. Allen GR, Midgley SH, Allen M (2002) Fieldguide to the Freshwater Fishes of Australia. Western Australian Museum, Perth.
4. Bermingham E, Avise JC (1986) Molecular zoogeography of freshwater fishes in the southeastern United States. Genetics, 113, 939-965.
5. Bermingham E, Martin AP (1998) Comparative mtDNA phylogeography of neotropical freshwater fishes: testing shared history to infer the evolutionary landscape of lower Central America. Molecular Ecology, 7, 499-517.
6. Bermingham E, McCafferty SS, Martin AP (1997) Fish biogeography and molecular clocks: perspectives from the Panamanian Isthmus. In: Molecular Systematics of Fishes (eds Kocher TD, Stepien CA), pp. 113-128. Academic Press, San Diego.
7. Chapco W, Kelln RA, McFayden DA (1992) Intraspecific mitochondrial DNA variation in the migratory grasshopper, Melanoplus sanguinipes. Heredity, 69, 547-557.
8. Cracraft J (1986) Origin and evolution of continental biotas: speciation and historical congruence within the Australian avifauna. Evolution, 40, 977-996.
9. Douady CJ, Delsuc F, Boucher Y, Doolittle WF, Douzery EJP (2003) Comparison of Bayesian and maximum likelihood bootstrap measures of phylogenetic reliability. Molecular Biology and Evolution, 20, 248-254.
10. Goldman N, Anderson JP, Rodrigo AG (2000) Likelihood-based tests of topologies in phylogenetics. Systematic Biology, 49, 652-670.
11. Grimes CB, Kingsford MJ (1996) How do riverine plumes of different sizes influence fish larvae: do they enhance recruitment. Marine and Freshwater Research, 47, 191-208.
12. Gyllensten U (1985) The genetic structure of fish: differences in the intraspecific distribution of biochemical genetic variation between marine, anadromous, and freshwater species. Journal of Fish Biology, 26, 691-699.
13. Hadfield AJ, Ivantsoff V, Johnston PG (1979) Clinal variation in electrphoretic and morphological characters between two nominal species of the genus Pseudomugil (Pisces: Atheriniformes: Pseudomugilidae). Australian Journal of Marine and Freshwater Research, 30, 375-386.
14. Hillis DM, Bull JJ (1993) An empirical test of bootstrapping as a method for assessing confidence in phylogenetic analysis. Systematic Biology, 42, 182-192.
15. Holder M, Lewis PO (2003) Phylogeny estimation: traditional and Bayesian approaches. Nature Reviews, Genetics, 4, 275-284.
16. Huelsenbeck JP, Ronquist F (2001) MRBAYES: Bayesian inference of phylogenetic trees. Bioinformatics, 17, 754-755.
17. Hughes JM, Ponniah M, Hurwood DA, Chenoweth SF, Arthington A (1999) Strong genetic structuring in a habitat specialist, the Oxleyan Pygmy Perch Nannoperca oxleyana. Heredity, 83, 5-14.
18. Hurwood DA, Hughes JM (1998) Phylogeography of the freshwater fish, Mogurnda adspersa, in streams of northeastern Queensland, Australia: evidence for altered drainage patterns. Molecular Ecology, 7, 1507-1517.
19. James CH, Moritz C (2000) Intraspecific phylogeography in the sedge frog Litoria fallax (Hylidae) indicates pre-Pleistocene vicariance of an open forest species from eastern Australia. Molecular Ecology, 9, 349-358.
20. Jerry DR, Cairns SC (1998) Morphological variation in the catadromous Australian bass, from several geographically distinct riverine drainages. Journal of Fish Biology, 52, 829-843.
21. Jerry DR, Woodland DJ (1997) Electrophoretic evidence for the presence of the undescribed 'Bellinger' catfish (Tandanus sp.) (Teleostei: Plotosidae) in four New South Wales mid-northern coastal rivers. Marine and Freshwater Research, 48, 235-240.
22. Joseph L, Moritz C, Hugall A (1995) Molecular support for vicariance as a source of diversity in rainforest. Proceeding of the Royal Society of London Series B, 260, 177-182.
23. Joseph L, Moritz C (1994) Mitochondrial DNA phylogeography of birds in eastern Australian rainforests: first fragments. Australian Journal of Zoology, 42, 385-403.
24. Joseph L, Moritz C, Hugall A (1993) A mitochondrial perspective on the historical biogeography of mideastern Queensland rainforest birds. Memoirs of the Queensland Museum, 34, 201-214.
25. Jukes TH, Cantor CR (1969) Evolution of protein molecules. In: Mammalian Protein Metabolism (ed. Munro HN), pp. 21-132. Academic Press, New York, NY, USA.
26. Keast A (1961) Bird speciation on the Australian continent. Bulletin of the of the Museum of Comparative Zoology, 123, 303-495.
27. McCusker MR, Parkinson E, Taylor EB (2000) Mitochondrial DNA variation in rainbow trout (Oncorhynchus mykiss) across its native range: testing biogeographical hypotheses and their relevance to conservation. Molecular Ecology, 9, 2098-2108.
28. McGlashan DJ, Hughes JM (2000) Reconciling patterns of genetic variation with stream structure, earth history and biology in the Australian freshwater fish Craterocephalus stercusmuscarum (Atherinidae). Molecular Ecology, 9, 1737-1751.
29. McGlashan DJ, Hughes JM (2001) Low levels of genetic differentiation among populations of the freshwater fish Hypseleotris compressa (Gobiidae: Eleotridinae): implications for its biology, population connectivity and history. Heredity, 86, 222-233.
30. McGlashan DJ, Hughes JM (2002) Extensive genetic divergence among populations of the Australian freshwater fish, Pseudomugil signifer (Pseudomugilidae), at different hierarchical scales. Marine and Freshwater Research, 53, 1-11.
31. McGuigan K, Zhu D, Allen GR, Moritz C (2000) Phylogenetic relationships and historical biogeography of melanotaeniid fishes in Australia and New Guinea. Marine and Freshwater Research, 51, 713-723.
32. Posada D, Crandall KA (1998) MODELTEST testing the model of DNA substitution. Bioinformatics, 14, 817-818.
33. Pusey BJ, Arthington AH, Read MG (1998) Freshwater fishes of the Burdekin River, Australia - biogeography, history and spatial variation in community structure. Environmental Biology of Fishes, 53, 303-318.
34. Pusey BJ, Kennard MJ (1996) Species richness and geographic variation in assemblage structure of the freshwater fish fauna of the wet tropics region of northern Queensland. Marine and Freshwater Research, 47, 563-573.
35. Reeder TW (2003) A phylogeny of the Australian Sphenomorphus group (Scincidae: Squamata) and the phylogenetic placement of the crocodile skinks (Tribolonotus): Bayesian approaches to assessing congruence and obtaining confidence in maximum likelihood inferred relationships. Molecular Phylogenetics and Evolution, 27, 384-397.
36. Rowland SJ (1993) Maccullochella ikei, an endangered species of freshwater cod (Pisces: Percichthyidae) from the Clarence river system, NSW and M. peelii mariensis, a new subspecies from the Mary river system, Qld. Records of the Australian Museum, 45, 121-145.
37. Saeed B, Ivantsoff W, Allen GR (1989) Taxonomic revision of the family Pseudomugilidae (order Atheriniformes). Australian Journal of Marine and Freshwater Research, 40, 719-787.
38. Schauble CS, Moritz C (2001) Comparative phylogeography of two open forest frogs from eastern Australia. Biology Journal of the Linnean Society of, 74, 157-170.
39. Schneider CJ, Cunningham M, Moritz C (1998) Comparative phylogeography and the history of endemic vertebrates in the Wet Tropics rainforests of Australia. Molecular Ecology, 7, 487-498.
40. Schultheis AS, Weight LA, Hendricks AC (2002) Gene flow, dispersal, and nested clade analysis among populations of the stonefly Peltoperla tarteri in the southern Appalachians. Molecular Ecology, 11, 317-327.
41. Semple G (1986) Pseudomugil signifer - maintenance, reproduction and early development of the Pacific blue-eye. Fishes of Sahul, 3, 121-125.
42. Shimodaira H, Hasegawa M (1999) Multiple comparisons of log-likelihoods with applications to phylogenetic inference. Molecular Biology and Evolution, 16, 1114-1116.
43. Simpson GG (1961) Historical zoogeography of Australian mammals. Evolution, 15, 431-446.
44. Slatkin M (1987) Gene flow and the geographic structure of populations. Science, 236, 787-792.
45. Suzuki Y, Glazko GV, Nei M (2002) Overcredibility of molecular phylogenies obtained by Bayesian phylogenetics. Proceedings of the National Academy of Sciences of the USA, 99, 16138-16143.
46. Swofford DL (2002) PAUP* Phylogenetic Analysis Using Parsimony (*and Other Methods), Version 4. Sinauer Associates, Sunderland, MA.
47. Thompson JD, GibsonTJ, Plewniak F, Jeanmougin F, Higgins DG (1997) The CLUSTALX windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Research, 24, 4876-4882.
48. Unmack PJ (2001) Biogeography of Australian freshwater fishes. Journal of Biogeography, 28, 1053-1089.
49. Ward RD, Woodwark M, Skibinski DOF (1994) A comparison of genetic diversity levels in marine, freshwater, and anadromous fishes. Journal of Fish Biology, 44, 213-232.
50. Waters JM, Dijkstra LH, Wallis GP (2000) Biogeography of a southern hemisphere freshwater fish: how important is marine dispersal? Molecular Ecology, 9, 1815-1821.
51. Whitley GP (1932) Fishes. Great Barrier Reef Expeditions in Science Report, 4, 267-316.
52. Wilcox TP, Zwickl DJ, Heath TA, Hillis DM (2002) Phylogenetic relationships of the dwarf boas and a comparison of Bayesian and bootstrap measures of phylogenetic support. Molecular Phylogenetics and Evolution, 25, 361-371.
53. Willmott WF, Trezise DL, O'Flynn ML, Holmes PR, Hofman GW (1988) Cairns Region, Queensland Sheets 8064, 8063 (Part) 1: 100 000 Geological Map Commentary. Queensland Department of Mines, Brisbane.
54. Wong BBM, Keogh JS, Jennions MD (2004) Mate recognition in a freshwater fish: geographic distance, genetic differentiation, and variation in female preference for local over foreign males. Journal of Evolutionary Biology, in press.
55. Woolschot L, Hughes JM, Bunn SE (1999) Dispersal among populations of Caridina sp. (Decopoda: Atidae) in coastal lowland streams, south-eastern Queensland, Australia. Marine and Freshwater Research, 50, 681-688.