Chemomechanical coupling in F1-ATPase revealed by simultaneous observation of nucleotide kinetics and rotation

Nature Structural and Molecular Biology

Volumn 11, Issue 2, 2004, Pages 142-148

  Nishizaka, Takayuki ^a,b,f   Oiwa, Kazuhiro ^a   Noji, Hiroyuki ^c   Kimura, Shigeki ^a   Muneyuki, Eiro ^d   Yoshida, Masasuke ^b,d   Kinosita Jr , Kazuhiko ^e  

^a National Institute of Information and Communications Technology   (Japan)

^b JAPAN SCIENCE AND TECHNOLOGY AGENCY   (Japan)

^c INSTITUTE OF INDUSTRIAL SCIENCE   (Japan)

^d TOKYO INSTITUTE OF TECHNOLOGY   (Japan)

^e Okazaki National Research Institutes   (Japan)

^f GAKUSHUIN UNIVERSITY   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

ADENOSINE DIPHOSPHATE; ADENOSINE TRIPHOSPHATASE; ADENOSINE TRIPHOSPHATE; MOLECULAR MOTOR; NUCLEOTIDE; PHOSPHATE; PROTON TRANSPORTING ADENOSINE TRIPHOSPHATASE;

ARTICLE; CATALYSIS; ENZYME KINETICS; ENZYME MECHANISM; ENZYME SUBUNIT; HYDROLYSIS; MICROSCOPY; NONHUMAN; PRIORITY JOURNAL; REACTION ANALYSIS; BACILLUS; CHEMISTRY; ENZYMOLOGY; KINETICS; METABOLISM;

ADENOSINE TRIPHOSPHATE; BACILLUS; HYDROLYSIS; KINETICS; PROTON-TRANSLOCATING ATPASES;

EID: 0742270602     PISSN: 15459993     EISSN: None     Source Type: Journal    
DOI: 10.1038/nsmb721     Document Type: Article

References (35)

1. 1-ATPase from bovine heart mitochondria. Nature 370, 621-628 (1994).
2. Boyer, P.D. The binding change mechanism for ATP synthase - some probabilities and possibilities. Biochim. Biophys. Acta 1140, 215-250 (1993).
3. Boyer, P.D. The ATP synthase - a splendid molecular machine. Annu. Rev. Biochem. 66, 717-749 (1997).
4. Yoshida, M., Muneyuki, E. & Hisabori, T. ATP synthase - a marvelous rotary engine of the cell. Nat. Rev. Mol. Cell Biol. 2, 669-677 (2001).
5. 1-ATPase. Nature 386, 299-302 (1997).
6. 1-ATPase. J. Biol. Chem. 276, 25480-25486 (2001).
7. 1-ATPase is a highly efficient molecular motor that rotates with discrete 120° steps. Cell 93, 1117-1124 (1998).
8. 1-ATPase visualized through angle-resolved single-fluorophore imaging. Proc. Natl. Acad. Sci. USA 97, 7243-7247 (2000).
9. Boyer, P.D. Catalytic site forms and controls in ATP synthase catalysis. Biochim. Biophys. Acta 1458, 252-262 (2000).
10. Kinosita, K. Jr., Yasuda, R., Noji, H. & Adachi, K. A rotary molecular motor that can work at near 100% efficiency. Phil. Trans. R. Soc. Lond. B 355, 473-489 (2000).
11. Weber, J. & Senior, A.E. ATP synthase: what we know about ATP hydrolysis and what we do not know about ATP synthesis. Biochim. Biophys. Acta 1458, 300-309 (2000).
12. 1-ATPase. Nature 410, 898-904 (2001).
13. Oiwa, K. et al. Comparative single-molecule and ensemble myosin enzymology: sulfoindocyanine ATP and ADP derivatives. Biophys. J. 78, 3048-3071 (2000).
14. Tokunaga, M., Kitamura, K., Saito, K., Iwane, A.H. & Yanagida, T. Single molecule imaging of fluorophores and enzymatic reactions achieved by objective-type total internal reflection fluorescence microscopy. Biochem. Biophys. Res. Commun. 235, 47-53 (1997).
15. Funatsu, T., Harada, Y., Tokunaga, M., Saito, K. & Yanagida, T. Imaging of single fluorescent molecules and individual ATP turnovers by single myosin molecules in aqueous solution. Nature 374, 555-559 (1995).
16. Ishijima, A. et al. Simultaneous observation of individual ATPase and mechanical events by a single myosin molecule during interaction with actin. Cell 92, 161-171 (1998).
17. Ha, T., Enderle, T., Chemla, S., Selvin, R. & Weiss, S. Single molecule dynamics studied by polarization modulation. Phys. Rev. Lett. 77, 3979-3982 (1996).
18. Sase, I., Miyata, H., Ishiwata, S. & Kinosita, K. Jr. Axial rotation of sliding actin filaments revealed by single-fluorophore imaging. Proc. Natl. Acad. Sci. USA 94, 5646-5650 (1997).
19. Axelrod, D. Total internal reflection fluorescence at biological surfaces, in Noninvasive Techniques in Cell Biology (eds. Foskett, J. K. & Grinstein, S.) 93-127 (Wiley-Liss, New York, 1990).
20. 1-ATPase from the thermophilic bacillus PS3 with the βT165S substitution does not entrap inhibitory MgADP in a catalytic site duringturnover. J. Biol. Chem. 271, 28818-28824 (1996).
21. 1-ATPase without noncatalytic nucleotide binding site. J. Biol. Chem. 272, 8215-8221 (1997).
22. 1-ATPase during catalysis. Proc. Natl. Acad. Sci. USA 98, 13649-13654 (2001).
23. Vale, R.D. & Oosawa, F. Protein motors and Maxwell's demons: does mechanochemical transduction involve a thermal ratchet? Adv. Biophys. 26, 97-134 (1990).
24. Astumian, R.D. & Bier, M. Fluctuation driven ratchets: molecular motors. Phys. Rev. Lett. 72, 1766-1769 (1994).
25. Hunt, A.J., Gittes, F. & Howard, J. The force exerted by a single kinesin molecule against a viscous load. Biophys. J. 67, 766-781 (1994).
26. 1-ATPase changes its conformations upon phosphate release. J. Biol. Chem. 277, 21643-21649 (2002).
27. 1 motor: cleavage of ATP at the catalytic site occurs in 1 ms before 40° substep rotation. Proc. Natl. Acad. Sci. USA 100, 14731-14736 (2003).
28. 1-ATPase; does it exist? J. Biol. Chem. 276, 35422-35428 (2001).
29. Boyer, P.D. Catalytic site occupancy during ATP synthase catalysis. FEBS Lett. 512, 29-32 (2002).
30. 1-ATPase and the hinge residues of the β subunit. J. Exp. Biol. 203, 1-8 (2000).
31. 1-ATPase from the thermophilic Bacillus PS3 fails to dissociate ADP when MgATP is hydrolyzed at a single catalytic site and attains maximal velocity when three catalytic sites are saturated with MgATP. Biochemistry 37, 16757-16764 (1998).
32. 1-ATPase from the thermophilic Bacillus PS3 increases the affinity of catalytic sites for nucleotides. J. Biol. Chem. 275, 10057-10063 (2000).
33. 1-ATPase. Eur. J. Biochem. 269, 53-60 (2002).
34. Nishizaka, T., Seo, R., Tadakuma, H., Kinosita, K. Jr. & Ishiwata, S. Characterization of single actomyosin rigor bonds: load dependence of lifetime and mechanical properties. Biophys. J. 79, 962-974 (2000).
35. Nishizaka, T., Miyata, H., Yoshikawa, H., Ishiwata, S. & Kinosita, K. Jr. Unbinding force of a singie motor molecule of muscle measured using optical tweezers. Nature 377, 251-254 (1995)