Sequence of the S9-RNase cDNA and PCR-RFLP system for discriminating S1- to S9-allele in Japanese pear

Euphytica

Volumn 135, Issue 2, 2004, Pages 157-167

  Takasaki, Takeshi ^a   Okada, Kazuma ^a   Castillo, Carlos ^a   Moriya, Yuki ^a   Saito, Toshihiro ^b   Sawamura, Yutaka ^b   Norioka, Naoko ^c   Norioka, Shigemi ^c   Nakanishi, Tetsu ^a  

^a KOBE UNIVERSITY   (Japan)

^b NATIONAL INSTITUTE OF FRUIT TREE SCIENCE   (Japan)

^c OSAKA UNIVERSITY   (Japan)

Author keywords

Japanese pear; Pyrus pyrifolia; S allele; S RNase; Self incompatibility

Indexed keywords

EMBRYOPHYTA; MALUS X DOMESTICA; PYRUS COMMUNIS; PYRUS PYRIFOLIA;

EID: 0442329789     PISSN: 00142336     EISSN: None     Source Type: Journal    
DOI: 10.1023/B:EUPH.0000014907.50575.d0     Document Type: Article

References (32)

1. Broothaerts, W., 2003. New findings in apple S-genotype analysis resolve previous confusion and request the re-numbering of some S-alleles. Theor Appl Genet 106: 703-714.
2. Broothaerts, W., G.A. Janssens, P. Proost & W.F. Broekaert, 1995. cDNA cloning and molecular analysis of two self-incompatibility alleles from apple. Plant Mol Biol 27: 499-511.
3. Castillo, C., T. Takasaki, T. Saito, Y. Yoshimura, S. Norioka & T. Nakanishi, 2001. Reconsideration of S-genotypes assignments, and discovery of a new allele based on S-RNase PCR-RFLPs in Japanese pear cultivars. Breed Sci 51: 5-11.
4. 8-allele) of Japanese Pear (Pyrus pyrifolia Nakai). Plant Biotech 19: 1-6.
5. Chomczynski, P. & N. Sacchi, 1987. Single-step method of RNA isolation by acid guanidinium thiocyanate-phenol-chloroform extraction. Analytical Biochem 162: 156-159.
6. Doyle, J.J. & J.L. Doyle, 1987. A rapid DNA isolation procedure for small quantities of fresh leaf tissue. Phytochem Bull 19: 11-15.
7. Hiratsuka, S., T. Kubo & Y. Okada, 1998. Estimation of self-incompatibility genotype in Japanese pear cultivars by stylar protein analysis. J Japan Soc Hort Sci 67: 491-496.
8. Ishimizu, T., K. Inoue, M. Shimonaka, T. Saito, O. Terai & S. Norioka, 1999. PCR-based method for identifying the S-genotypes of Japanese pear cultivars. Theor Appl Genet 98: 961-967.
9. Ishimizu, T., S. Norioka, M. Kanai, A.E. Clarke & F. Sakiyama, 1996b. Location of cysteine and cystine residues in S-ribonucleases associated with gamethophytic self-incompatibility. Eur J Biochem 242: 627-635.
10. Ishimizu, T., Y. Sato, T. Saito, Y. Yoshimura, S. Norioka, T. Nakanishi & F. Sakiyama, 1996a. Identification and partial amino acid sequences of seven S-RNases associated with self-incompatibility of Japanese pear, Pyrus pyrifolia Nakai. J Biochem 120: 326-334.
11. Ishimizu, T., T. Shinkawa, F. Sakiyama & S. Norioka, 1998. Primary structural features of rosaceous S-RNases associated with gametophytic self-incompatibility. Plant Mol Biol 37: 931-941.
12. Kajiura, I. & Y. Sato, 1990. Recent progress in Japanese pear (Pyrus pyrifolia Nakai) breeding and descriptions of cultivars based on literature review. Bull Fruit Tree Res Sta Extra No. 1. (in Japanese with English summary).
13. 2 from Aspergillus oryzae. Eur J Biochem 187: 244-262.
14. Kikuchi, A., 1929. Investigations in 1927 and 1928. 1. Paterclinical incompatibility in the Japanese pear. (in Japanese). Okitsu Hort Soc 24: 1-6.
15. Li, J.-H., N. Nass, M. Kusaba, P.N. Dodds, N. Treloar, A.E. Clarke & E. Newbigin, 2000. A genetic map of the Nicotiana alata S locus that includes three pollen-expressed genes. Theor Appl Genet 6: 956-964.
16. Machida, Y., Y Sato, I. Kozaki & K. Seiki, 1982. S-genotypes of several cultivars of Japanese pear and the question of the parents of 'Hosui'. (in Japanese) J Japan Soc Hort Sci 51 (Suppl 2): 58-59.
17. Machida, Y., I. Kajiura, Y Sato, K. Kotobuki, I. Kozaki, K. Seike & K. Kanato, 1984. New Japanese pear cultivar 'Shinsei'. (in Japanese with English summary). Bull Natl Inst Fruit Tree Sci. A. 11: 9-13.
18. 5-RNase' in the Japanese Pear. Plant Physiol 122: 620.
19. de Nettancourt, 1977. Incompatibility in Angiosperms. Springer-Verlag, Berlin.
20. Nielsen, H., S. Brunak & G. Heijne, 1999. Machine learning approaches to the prediction of signal peptides and other protein sorting signals. Protein Engineering 12: 3-9.
21. Norioka, N., S. Norioka, Y Ohnishi, T. Ishimizu, C. Oneyama, T. Nakanishi & F. Sakiyama, 1996. Molecular cloning and nucleotide sequences of cDNAs encoding S-allele specific stylar RNases in a self-incompatible cultivar and its self-compatible mutant of Japanese pear, Pyrus pyrifolia Nakai. J Biochem 120: 335-345.
22. Ogaki, C., 1958. The sterility-factors in new varieties of the Japanese pear (Pyrus serotina Rehd. var. culta Rehd.). in Japanese with English summary) Res Rep Kanagawa Agr Sta Hort Inst 5: 23-26.
23. Ogawa, H., T. Miyashita, H. Makita, K. Tsukahara, T. Shimazu, T. Maejima, A. Usuda & T. Ito, 2002. New Japanese pear cultivar 'Nansui'. Acta Horti 587: 303-306.
24. Sassa, H., H. Hirano & H. Ikehashi, 1992. Self-incompatibility- related RNases in styles of Japanese pear (Pyrus serotina Rehd.). Plant Cell Physiol 33: 811-814.
25. Sassa, H., H. Hirano, T. Nisho & T. Koba, 1997. Style-specific self-compatible mutation caused by deletion of the S-RNase gene in Japanese pear (Pyrus serotina). Plant J 12: 223-227.
26. Sato, Y., K. Abe, T. Saito & K. Kotobuki, 1992. Selection of S-gene homozygotes and its utilization for S-genotype analysis of 'Osa-Nijisseiki'. (in Japanese) J Japan Soc Hort Sci 61 (suppl. 2): 16-17.
27. Sawamura, Y., T. Saito, M. Shoda, T. Yamamoto, Y. Sato, T. Hayashi & K. Kotobuki, 2002. A new self-incompatible allele in Japanese pears 'Shinsei' and 'Shinkou'. J Japan Soc Hort Sci 71: 342-347.
28. Skoog, B. & A. Wichman, 1986. Calculation of the isoelectric points of polypeptides from the amino acid composition. Trends Anal Chem 5: 82-83.
29. Terami, H., H. Torikata & Y. Shimazu, 1946. Analysis of the sterility factors existing in varieties of the Japanese pear (Pyrus serotina Rehd. var. culta Rehd). (in Japanese with English summary) Studies Hort Inst Kyoto Imp Univ 3: 267-271.
30. Terai, O., S. Sato, T. Saito, K. Abe, T. Nishibata & K. Kotobuki, 1997. S-genotypes analysis of 'Housui'. (in Japanese). J Japan Soc Hort Sci 66 (suppl. 2): 122-123.
31. Ushijima, K., H. Sassa, R. Tao, H. Yamane, A.M. Dandekar, T.M. Gradziel & H. Hirano, 1998. Cloning and characterization of cDNAs encoding S-RNases from almond (Prunus dulcis): primary structural features and sequence diversity of the S-RNases in Rosaceae. Mol Gen Genet 260: 261-268.
32. Xu, B., P. Gran, A. Kheyr-Pour & T.-H. Kao, 1990. Identification of pistil-specific protein associated with three self-incompatibility alleles in Solanum chacoense. Sex plant Reprod 3: 54-60.