Free radical EPR spectroscopy analysis using blind source separation

Journal of Magnetic Resonance

Volumn 166, Issue 1, 2004, Pages 82-91

  Ren, J Y ^a   Chang, C Q ^a   Fung, P C W ^a   Shen, J G ^a   Chan, F H Y ^a  

^a UNIVERSITY OF HONG KONG   (Hong Kong)

Author keywords

Blind source separation; Electron paramagnetic resonance; Free radical; Independent component analysis; Spectroscopy analysis

Indexed keywords

CELLS; ELECTRON SPIN RESONANCE SPECTROSCOPY; FREE RADICALS; METABOLISM; PARAMAGNETIC MATERIALS; PRINCIPAL COMPONENT ANALYSIS; SPECTRUM ANALYSIS;

KIDNEYS; SPIN TRAPPING;

BLIND SOURCE SEPARATION;

5 DIETHOXYPHOSPHORYL 5 METHYL 1 PYRROLINE 1 OXIDE; 5-DIETHOXYPHOSPHORYL-5-METHYL-1-PYRROLINE N-OXIDE; AMINE OXIDE; FREE RADICAL; HYDROXYL RADICAL; NITRIC OXIDE; REACTIVE OXYGEN METABOLITE; SUPEROXIDE;

ALGORITHM; ANIMAL; ARTICLE; CHEMISTRY; CHO CELL; COMPARATIVE STUDY; CRICETULUS; ELECTRON SPIN RESONANCE; EVALUATION; HAMSTER; KIDNEY; METHODOLOGY; SIGNAL PROCESSING; SOLUTION AND SOLUBILITY; VALIDATION STUDY;

ALGORITHMS; ANIMALS; CHO CELLS; CRICETINAE; CRICETULUS; CYCLIC N-OXIDES; ELECTRON SPIN RESONANCE SPECTROSCOPY; FREE RADICALS; HYDROXYL RADICAL; KIDNEY; NITRIC OXIDE; REACTIVE OXYGEN SPECIES; SIGNAL PROCESSING, COMPUTER-ASSISTED; SOLUTIONS; SUPEROXIDES;

EID: 0348222025     PISSN: 10907807     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.jmr.2003.10.015     Document Type: Article

References (34)

1. Berliner L.J. In Vivo EPR (ESR): Theory and Applications. Biological Magnetic Resonance. vol. 18:2000;Kluwer Academic/Plenum, New York.
2. Bonventre J.V. Mechanisms of ischemic acute renal failure. Kidney Int. 43:1993;1160-1178.
3. Maessen J.G. Reperfusion injury in the kidney. Das D.K. Pathophysiology of Reperfusion Injury. 1993;79-100 CRC Press, Boca Raton, FL.
4. Rosen G.M., Britigan B.E., Halpern H.J., Pou S. Free Radicals: Biology and Detection by Spin Trapping. 1999;Oxford University Press, New York.
5. Prisner T., Rohrer M., MacMillan F. Pulsed EPR spectroscopy: biological applications. Annu. Rev. Phys. Chem. 52:2001;279-313.
6. Kirste B. Methods for automated analysis and simulation of electron paramagnetic resonance spectra. Anal. Chim. Acta. 265:1992;191-200.
7. Chalfont G.R., Perkins M.J., Horsfield A. A probe for homolytic reactions in solution. J. Am. Chem. Soc. 90:1968;7141-7142.
8. Janzen E.G., Blackburn B.J. Detection and identification of short-lived free radicals by an electron spin resonance trapping technique. J. Am. Chem. Soc. 90:1968;5909-5910.
9. Janzen E.G. Spin trapping. Acc. Chem. Res. 4:1971;31-40.
10. Liu K.J., Miyake M., Panz T., Swartz H. Evaluation of DEPMPO as a spin trapping agent in biological systems. Free Radic. Biol. Med. 26:1999;714-721.
11. Berliner L.J., Khramtsov V., Fujii H., Clanton T.L. Unique in vivo applications of spin traps. Free Radic. Biol. Med. 30:2001;489-499.
12. Nagano T., Yoshimura T. Bioimaging of nitric oxide. Chem. Rev. 102:2002;1235-1270.
13. Kubrina L.N., Caldwell W.S., Mordvintcev P.I., Malenkova I.V., Vanin A.F. EPR evidence for nitric oxide production from guanidino nitrogens of L-arginine in animal tissues in vivo. Biochim. Biophys. Acta. 1099:1992;233-237.
14. Wilcox D.E., Smith R.P. Detection and quantification of nitric oxide using electron magnetic resonance spectroscopy. Methods. 7:1995;59-70.
15. Svistunenko D.A., Sharpe M.A., Nicholls P., Wilson M.T., Cooper C.E. A new method for quantitation of spin concentration by EPR spectroscopy: application to methemoglobin and metmyoglobin. J. Magn. Reson. 142:2000;266-275.
16. Steinbock O., Neumann B., Cage B., Saltiel J., Muller S.C., Dalal N.S. A demonstration of principal component analysis for EPR spectroscopy: identifying pure component spectra from complex spectra. Anal. Chem. 69:1997;3708-3713.
17. Stoyanova R., Brown T.R. NMR spectral quantitation by principal component analysis. III. A generalized procedure for determination of lineshape variations. J. Magn. Reson. 154:2002;163-175.
18. Roth Z., Baram Y. Multidimensional density shaping by sigmoids. IEEE Trans. Neural Netw. 7:1996;1291-1298.
19. Jung T.-P., Humphries C., Lee T.-W., Makeig S., McKeown M., Iragui V., Sejnowski T. Extended ICA removes artifacts from electroencephalographic recordings. Jordan M.I., Kearns M.J., Solla S.A. Advances in Neural Information Processing Systems. 1998;894-900 MIT Press, Cambridge.
20. Makeig S., Bell A., Jung T.-P., Sejnowski T. Independent component analysis of electroencephalographic data. Touretzky D.S., Mozer M.C., Hasselmo M.E. Advances in Neural Information Processing Systems. 1996;145-151 MIT Press, Cambridge.
21. McKeown M.J., Jung T.-P., Makeig S., Brown G., Kindermann S.S., Lee T.-W., Sejnowski T.J. Spatially independent activity patterns in functional MRI data during the Stroop color-naming task. Proc. Natl. Acad. Sci. USA. 95:1998;803-810.
22. Nuzillard D., Bourg S., Nuzillard J.-M. Model-free analysis of mixtures by NMR using blind source separation. J. Magn. Reson. 133:1998;358-363.
23. Comon P. Independent component analysis, a new concept. Signal Process. 36:1994;287-314.
24. Hyvärinen A., Karhunen J., Oja E. Independent Component Analysis. 2001;Wiley, New York.
25. Chang C.Q., Yau S.F., Kwok P., Chan F.H.Y., Lam F.K. Uncorrelated component analysis for blind source separation. Circuits Syst. Signal Process. 18:1999;225-239.
26. Hyvärinen A. Fast and robust fixed-point algorithms for independent component analysis. IEEE Trans. Neural Netw. 10:1999;626-634.
27. Chang C.Q., Ding Z., Yau S.F., Chan F.H.Y. A matrix-pencil approach to blind separation of colored nonstationary signals. IEEE Trans. Signal Process. 48:2000;900-907.
28. J. Hurri, H. Gävert, J. Särelä, A. Hyvärinen, Available from 〈 http://www.cis.hut.fi/projects/ica/fastica〉
29. Chan F.H.Y., Qiu W., Lam F.K., Poon P.W.F., Lam M.K. Evoked potential estimation using modified time-sequenced adaptive filter. Med. Biol. Eng. Comput. 36:1998;407-414.
30. Qiu W., Fung K.S.M., Chan F.H.Y., Lam F.K., Poon P.W.F., Hamernik R.P. Adaptive filtering of evoked potentials with radial-basis-function neural network prefilter. IEEE Trans. Biomed. Eng. 49:2002;225-232.
31. Zhu W., Fung P.C. The roles played by crucial free radicals like lipid free radicals, nitric oxide, and enzymes NOS and NADPH in CCl(4)-induced acute liver injury of mice. Free. Radic. Biol. Med. 29:2000;870-880.
32. Shen J., Wang J., Zhao B., Hou J., Gao T., Xin W. Effects of EGb 761 on nitric oxide and oxygen free radicals, myocardial damage and arrhythmia in ischemia-reperfusion injury in vivo. Biochim. Biophys. Acta. 1406:1998;228-236.
33. Frejaville C., Karoui H., Tuccio B., Moigne F.L., Culcasi M., Pietri S. 5-(Diethoxyphosphoryl)-5-methyl-1-pyrroline N-oxide: a new efficient phosphorylated nitrone for the in vitro and in vivo spin trapping of oxygen-centered radicals. J. Med. Chem. 38:1995;258-265.
34. Hasspieler B.M., Di Giulio R.T. DT diaphorase [NAD(P)H: (quinone acceptor) oxidoreductase] facilitates redox cycling of menadione in channel catfish (Ictalurus punctatus) cytosol. Toxicol. Appl. Pharmacol. 114:1992;156-161.