Ester-linked phospholipid fatty acids in marine sediments: Testing the possibility of methane seepage in the japan sea

Aquatic Ecosystem Health and Management

Volumn 6, Issue 4, 2003, Pages 397-408

  Ogawa, Mari ^a,b   Tanimoto, Daisuke ^b   Okamoto, Takuji ^b   Saito, Yasunori ^c   Jing, Zhang ^d   Takeuchi, Akira ^d   Naganuma, Takeshi ^b  

^a KEIO UNIVERSITY   (Japan)

^b HIROSHIMA UNIVERSITY   (Japan)

^c UNIVERSITY OF TSUKUBA   (Japan)

^d UNIVERSITY OF TOYAMA   (Japan)

Author keywords

16S rDNA; Deep sea; PLFA; Shiribeshi Seamount; Toyama Bay

Indexed keywords

BACTERIA (MICROORGANISMS); MEGALODICOPIA HIANS;

EID: 0347662344     PISSN: 14634988     EISSN: 15394077     Source Type: Journal    
DOI: 10.1080/714044169     Document Type: Article

References (31)

1. Connell, W. E., Patrick Jr., W. H., 1968. Sulfate reduction in soil: effects of redox potential and pH. Science 159, 86–87.
2. De Long, E. F., 1992. Archaea in coastal marine environments. Proc. Natl. Acad. Sci. USA 89, 5685–5689.
3. Ferry, J. G., 1997. Methane: small molecule, big impact. Science 278, 1413–1414.
4. Findlay, R. H., Dobbs, F. C., 1993. Quantitative description of microbial communities using lipid analysis. In: P. F. Kemp, B. F. Sherr, E. B. Sherr, J. J. Cole (Eds.), Handbook of Methods in Aquatic Microbial Ecology, pp. 271–284. Lewis Publishers, Boca Raton, Florida.
5. Hanson, R., Hanson T., 1996. Methanotrophic bacteria. Microbiol. Rev. 60, 439–471.
6. Hisada, K., Kajiwara, Y., Yamaguchi, T., 1998. Sulfur-isotope studies of upper Albian sediments at the Cote d’Ivoire-Ghana transform margin. In: J. Mascle, G. P. Lohman, M. Moullade (Eds.), Proceedings of the Ocean Drilling Program, Scientific Results, Vol. 159, pp. 125–131. Ocean Drilling Program, College Station, Texas.
7. Kimura, H., Higashide, Y., Naganuma, T., 1999. Endosymbiotic and ambient microflorae of vestimentiferan tubeworm. JAMSTEC Deep Sea Res. 15(I), 25–33 (in Japanese with English abstract).
8. Li, L., Guenzennec, J., Nichols, P., Henry, P., Yanagibayashi, M., Kato, C., 1999. Microbial diversity in Nankai Trough sediments at a depth of 3,843 m. J. Oceanograph. 55, 635–642.
9. Ministry of Agriculture, Forestry and Fisheries of Japan, 2000. Preliminary Statistical Report No. 12-67. http://www.maff.go.jp/ esokuhou/2000-067.PDF
10. Naganuma, T., 1995. Sediment fatty acids from the Shiribeshi Seamount in the Eastern Margin of the Japan Sea: A comparison with cold seep sediments. JAMSTEC Deep Sea Res. 11, 403–410 (in Japanese with English abstract).
11. Naganuma, T., Horikoshi, K., 1994. Cellular fatty acids of marine agarolytic gliding bacteria. Syst. Appl. Microbiol. 17, 125–127.
12. Naganuma, T., Coury, D. E., Polne-Fuller, M., Gibor, A., Horikoshi, K., 1993. Characterization of agarolytic Microscilla isolates and their extracellular agarases. Syst. Appl. Microbiol. 16, 183–190.
13. Naganuma, T., Meisel, C. J., Wada, H., Kato, Y., Takeuchi, A., Fujikura, K., Naka, J., Fujioka, K., 1999. Sea-floor fissures, biological communities and sediment fatty acids of the Northern Okushiri Ridge, Japan Sea: implications for possible methane seepage. Island Arc 8, 232–244.
14. Naganuma, T., Hattori, M., Akimoto, K., Hashimoto, J., Momma, H., Meisel, C. J., 2001. Apparent microfloral response to organic degradation on bathyal seafloor: An analysis based on sediment fatty acids. Mar. Ecol. 22, 267–282.
15. Naka, J., Fujikura, K., Hashimoto, J., 1991. New geological information of Calyptogena colony off Hatsshima, Sagami Bay. JAMSTEC Deep Sea Res. 7, 1–5 (in Japanese with English abstract).
16. Naka, J., Takahashi, E., Clague, D., Garcia, M., Hanyu, T., Herro- Bervera, E., Ishibashi, J., Ishizuka, O., Johnson, K., Kanamatsu, T., Kaneoka, I., Lipman, P., Malahoff, A., McMurtry, G., Midson, B., Moore, J., Morgan, J., Naganuma, T., Nakajima, K., Oomori, T., Pietruszka, A., Satake, K., Sherrod, D., Shibata, T., Shinozaki, K., Sisson, T., Smith, J., Takarada, S., Thornber, C., Trusdell, F., Tsuboyama, N., Ui, T., Umino, S., Uto, K., Yokose, H., 2000. Tectono-magmatic processes investigated at deep-water flanks of Hawaiian volcanoes. EOS Trans. Am. Geophys. Union 81, 221, 226, 227.
17. Ogawa, M., Takeuchi, A., Zhang, J., Saito, Y., Naganuma, T., 2001. Bathyal ascidian colonization in the active fault zones of Toyama Bay. p 8 (in Japanese). In: Abstracts of the 17th Shinkai Deep- Sea Symposium, 18–19 January 2001, Japan Marine Science and Technology Center, Yokosuka, Japan
18. Okuyama, M., Saito, Y., Hirose, Y., Takeuchi, A., Zhang, J., Ogawa, M., Naganuma, T., 2001. Morphological studies on the bathyal ascidian, Megalodicopia hians Oka 1918 (Octacnemidae, Phlebobranchia). p. 153 (in Japanese). In: Abstracts of the 18th Shinkai Deep-Sea Symposium, 20–21 December 2001, Japan Marine Science and Technology Center, Yokosuka, Japan.
19. Page, R. D. M., 1996. TreeView: an application to display phylogenetic trees on personal computers Comput. Appl. Biosci. 12, 357–358.
20. Parkes, R. J., 1987. Analysis of microbial communities within sediments using biomarkers. In: M. Fletcher, T. R. G. Gray, J. G. Jones (Eds.), Ecology of Microbial Communities, pp. 147–177. Cambridge University Press, Cambridge.
21. Rajendran, N., Matsuda, O., Urushigawa, Y., Shimidu, U., 1994. Characterization of microbial community structure in the surface sediment of Osaka Bay, Japan, by phospholipid fatty acid analysis. Appl. Environ. Microbiol. 60, 248–257.
22. Saitou, N., Nei, M., 1987. The neighbor-joining method: a new method for constructing phylogenetic trees. Mol. Biol. Evol. 4, 406–425.
23. Sasser, M., 1990a. Identification of bacteria by gas chromatography of cellular fatty acids. MIDI Technical Note (MIDI, Newark, Delaware) 101, 1–7.
24. Sasser, M., 1990b. “Tracking” a strain using the microbial identification system. MIDI Technical Note (MIDI, Newark, Delaware) 102, 1–4.
25. Stakes, D. S., Orange, D., Paduan, J. B., Salamy, K. A., Maher, N., 1999. Cold-seeps and authigenic carbonate formation in Monterey Bay, California. Mar. Geol. 159, 93–109.
26. Suzuki, M. T., Rappé, M. S., Haimberger, Z. W., Winfield, H., Adair, N., Strobel, J., Giovannoni, S. J., 1997. Bacterial diversity among small-subunit rRNA gene clones and cellular isolates from thesame seawater sample. Appl. Environ. Microbiol. 63, 983–989.
27. Takeuchi, A., Tanaka, T., 1990. Geomorphology, geology and tectonics of the Shiribeshi Seamount, northern Sea of Japan. JAMSTEC Deep Sea Res. 6, 317–326 (in Japanese with English abstract).
28. Takeuchi, A., Fujikura, K., Naganuma, T., Kuramoto, S., Okamura, Y., Okano, H., Aoki, M., Kodera, T., 1998. Bottom response to a tsunami earthquake: submersible observations in the epicenter area of the 1993 earthquake off southwestern Hokkaido, Sea of Japan. J. Geophys. Res. 103, 24109–24125.
29. Tamaki, K., Honza, E., 1985. Incipient subduction and abduction along the eastern margin of the Japan Sea. Tectonophysics 119, 381–406.
30. Whittenburry, R., 1981. The interrelationship of autotrophy and methylotrophy as seen in Methylococcus capsulatus (Bath). In: H. Dalton (Ed.), Microbial Growth on C1 Compounds, pp. 181–190. Heydon, London.
31. Zhang, J., Takeuchi, A., Saito, Y., Ogawa, M., Naganuma, T., 2001. Stable isotope ratios of Megalodicopia hians inhabiting possible seeps in Toyama Bay. p 59–60 (in Japanese). In: Abstracts of the 18th Shinkai Deep-Sea Symposium, 20–21 December 2001, Japan Marine Science and Technology Center, Yokosuka, Japan.